mRNA_H-paniculata_contig3358.8989.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3358.8989.1
Unique NamemRNA_H-paniculata_contig3358.8989.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: D7FLQ8_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLQ8_ECTSI)

HSP 1 Score: 393 bits (1010), Expect = 9.790e-123
Identity = 194/228 (85.09%), Postives = 213/228 (93.42%), Query Frame = 1
Query:    1 QEWAPFGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGEVAR 684
            +EWAPFG HQN KWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTA+MRMIFEIHSLKNATPATVSRAGILFVNETDIGW+P++ESWVQARP+ESEKVVLEGLF+RHVP I+++LKK KMEPLVPIP I+MVQAVC LLEGLLPA+ DKT+E      +MER+FLFAAMWAFGGALSSDSKCD+R+ FSQEWRKLLPSK+VKLP+QGLVFDYFVNPENGEV R
Sbjct: 2507 KEWAPFGLHQNHKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTAAMRMIFEIHSLKNATPATVSRAGILFVNETDIGWHPYVESWVQARPVESEKVVLEGLFNRHVPDILEMLKKAKMEPLVPIPTINMVQAVCRLLEGLLPALTDKTSE------NMERVFLFAAMWAFGGALSSDSKCDDRKVFSQEWRKLLPSKSVKLPDQGLVFDYFVNPENGEVGR 2728          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: F0XZT7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZT7_AURAN)

HSP 1 Score: 280 bits (715), Expect = 4.360e-83
Identity = 138/227 (60.79%), Postives = 172/227 (75.77%), Query Frame = 1
Query:    1 QEWAPFGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGEVA 681
            +EW+P+  HQ  KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLT SMRM+FEIHSLKNATPATVSRAGIL+VNE DIGW PF ESW+  R  E+E   + GLF ++VP +ID+LK+ K+E L P+  IS V ++C LLEGLL  V D    A+  +  +ER+FL+A++W FGG  ++D   D+RR FS  WR+    K +K PE GLVF+Y+V+P  GE+A
Sbjct: 2317 KEWSPYAAHQTYKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTESMRMVFEIHSLKNATPATVSRAGILYVNELDIGWLPFAESWIHDRTHETELATMPGLFDKYVPQMIDLLKERKVETLTPVMTISRVTSLCYLLEGLLAQVPD----AAKDQERIERLFLYASVWVFGGVAAADKTVDSRRSFSDAWRQTF--KALKFPEGGLVFEYYVDPSTGELA 2537          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A8J2SDE7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SDE7_9STRA)

HSP 1 Score: 249 bits (636), Expect = 1.790e-72
Identity = 127/225 (56.44%), Postives = 164/225 (72.89%), Query Frame = 1
Query:    7 WAPFGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGEVA 681
            W P+   Q  +WV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLT +MRM+FEI SL+NATPATVSRAGILF+NETDIGW PF  SW + R  ++EK  L G F +++P +I +LK+  +E L P+  IS V A+C LLEG L AV +  +E    R+  ER+FL+A +WAFGG  ++D   D+R+ F++ WR +     +KLPE GL F+Y V+P +G+V 
Sbjct: 2293 WQPYTSAQTDQWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTPAMRMVFEIESLRNATPATVSRAGILFINETDIGWAPFATSWTERRDSDTEKSCLPGFFDKYIPQLIAMLKEKGVEYLTPVMTISKVSALCHLLEGYLSAVPE--SEKDGHRI--ERLFLYACIWAFGGCAAADKTTDSRQLFNEVWRDVAKGG-LKLPEAGLCFEYAVDPASGDVC 2512          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A482SY26_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SY26_9ARCH)

HSP 1 Score: 248 bits (633), Expect = 4.370e-72
Identity = 127/223 (56.95%), Postives = 162/223 (72.65%), Query Frame = 1
Query:   13 PFGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGEVA 681
            P+   Q  KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPL+ SMRMIFEIHSLKNATPATVSRAGIL++N+TDIG+ P++ESW+ +R  E EK  L  L  R++  +I+ L   K E +VP+PII++VQ++C LL+G L +   +  +A+     MER+FLF  MWAFGG L+SD + D R+ FS  +R L  +K +K PE   V D F++P  GE  
Sbjct:  360 PYSASQTAKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLSESMRMIFEIHSLKNATPATVSRAGILYINDTDIGYGPYLESWLASRTNELEKAYLPYLTSRYLTKVIEFLAVSKPEKIVPLPIINLVQSLCYLLDGFLKSFTGEKNQAA-----MERIFLFCLMWAFGGPLTSDKQTDFRKMFSNFFRTL--TKAIKFPETASVLDCFIDPLTGEAV 575          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A329S004_9STRA (Dynein beta chain, flagellar outer arm n=23 Tax=Peronosporaceae TaxID=4777 RepID=A0A329S004_9STRA)

HSP 1 Score: 238 bits (607), Expect = 1.410e-68
Identity = 128/221 (57.92%), Postives = 158/221 (71.49%), Query Frame = 1
Query:   16 FGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAV-VDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGE 675
            F   Q+ KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPL+++MRM+FEI+SLKNATPATVSRAGILF+NE DIGW PFMESWV  R  E E+  L GLF ++V  I D+++KG  + + P+ +I+ V  +C LLEGLL  + VDK    +P  +  E +F+F A WAFGG L  D   D R+ F + W     +  VK P++GL FDYF N E GE
Sbjct: 2236 FYESQSYKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLSSAMRMVFEINSLKNATPATVSRAGILFINEIDIGWRPFMESWVAKREEEVERTYLPGLFDKYVDPIYDLMRKGYKQ-VAPVRLINQVSTICYLLEGLLGNIPVDKK---NPEVI--ESIFVFCATWAFGGPLIVDKSIDYRKNFHELWCSTFTN--VKYPKEGLCFDYFYNLEAGE 2448          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A662XP47_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XP47_9STRA)

HSP 1 Score: 236 bits (603), Expect = 3.090e-68
Identity = 124/220 (56.36%), Postives = 157/220 (71.36%), Query Frame = 1
Query:   16 FGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGE 675
            F   Q+ KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPL+A+MRM+FEI+SLKNATPATVSRAGIL++NE DIGW PFMESWV  R  E E+  L GLF ++V  I D+++KG  + + P+ +I+ V  +C LLEGLL  +  +  + +P  +  E +F+F A WAFGG L  D   D R+ F + W     S  +K P++GL FD+F N E GE
Sbjct:  360 FYESQSYKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLSAAMRMVFEINSLKNATPATVSRAGILYINEIDIGWRPFMESWVAKREEEVERTYLPGLFDKYVDTIYDLMRKGYKQ-VAPVRLINQVSTICYLLEGLLGNIPME--KKNPEVI--ESIFVFCATWAFGGPLIVDKSIDYRKNFHELWCSTFTS--IKYPKEGLCFDFFYNLETGE 572          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A6A4E4A7_9STRA (Dynein beta chain, flagellar outer arm (Fragment) n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E4A7_9STRA)

HSP 1 Score: 236 bits (602), Expect = 6.520e-68
Identity = 125/222 (56.31%), Postives = 155/222 (69.82%), Query Frame = 1
Query:   16 FGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLP--AVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGE 675
            F   Q  KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPL+++MRM+FEI+SLKNATPATVSRAGILF+NE DIGW PFMESWV  R  E E+  L GLF ++V  I D+++KG  + + P+ +I+ V  +C LLEGLL    +  K  E       +E +F+F A WAFGG L  D   D R+ F + W     +  VK P++GL FDYF N ++GE
Sbjct: 2232 FYESQTYKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLSSAMRMVFEINSLKNATPATVSRAGILFINEIDIGWRPFMESWVAKREEEVERTYLPGLFDKYVDPIYDLMRKGYKQ-VAPVRLINQVSTICYLLEGLLGNIPIEKKNPEV------IESIFVFCATWAFGGPLIVDKSIDYRKNFHELWCSTFTN--VKYPKEGLCFDYFYNLDSGE 2444          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: K3X373_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X373_GLOUD)

HSP 1 Score: 236 bits (602), Expect = 6.590e-68
Identity = 123/217 (56.68%), Postives = 154/217 (70.97%), Query Frame = 1
Query:   28 QNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAV-VDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGE 675
            Q  KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPL+++MRM+FEI+SLKNATPATVSRAGILF+NETDIGW PFMESWV  R  E E+  L GLF ++V    D+++KG  + + P+ +I+ V  +C LLEGLL  V  DK  +       +E +F++ A WAFGG L  D   D R+ F + W  +     +K P++GL FDYF N E+ E
Sbjct: 2116 QTYKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLSSAMRMVFEINSLKNATPATVSRAGILFINETDIGWRPFMESWVAKREEEIERTYLPGLFDKYVDTTYDLMRKGYKQ-VAPVRLINQVSTICYLLEGLLGNVPADKKTQEV-----IESIFVYCATWAFGGPLIVDKSIDYRKNFHELW--IATFTNIKYPKEGLCFDYFYNLESNE 2324          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A2D4BRA7_PYTIN (Sporangia induced dynein heavy chain n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BRA7_PYTIN)

HSP 1 Score: 234 bits (597), Expect = 3.070e-67
Identity = 127/222 (57.21%), Postives = 152/222 (68.47%), Query Frame = 1
Query:   16 FGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVD--KTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPENGE 675
            F   Q  KWV+LDGDIDAVWIESMNTVMDDNKVLTLVSNERIPL+ +MRM+FEI+SLKNATPATVSRAGILF+NETDIGW PFMESWV  R  E E+  L  LF R+V    ++ +KG  + + P+ +I+ V  +C LLEGLL AV    KT +       +E +F+F A WAFGG L  D   D R+ F + W    P+  VK P+ GL FDYF N E  E
Sbjct: 1821 FYESQTYKWVVLDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLSDAMRMVFEINSLKNATPATVSRAGILFINETDIGWRPFMESWVAKRVEEVERTFLPALFDRYVDTTYEMTRKGYKQ-VAPVRLINQVSTICYLLEGLLTAVPPERKTQDI------IEAVFVFCATWAFGGPLIVDKSVDYRKNFHELWIATFPN--VKYPKDGLCFDYFWNVETNE 2033          
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Match: A0A0S7HQT5_9TELE (DYH9 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HQT5_9TELE)

HSP 1 Score: 220 bits (560), Expect = 4.120e-67
Identity = 112/215 (52.09%), Postives = 152/215 (70.70%), Query Frame = 1
Query:   25 HQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLTASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLESEKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPAVVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKLLPSKTVKLPEQGLVFDYFVNPEN 669
            H   KW++LDGDID +WIES+NTVMDDNKVLTL SNERIPL  +MR++FEI  L+ ATPATVSRAGIL++N  D+GW+P + SW+  R ++SEK  L  LF +++P+ +D+LK  + + ++PIP  S+VQ +C LLE LL    + T   S + L  E  F+FA++WAFGGAL  D   D R  FS+ W  +   KT+K P QG VFDY+++PE+
Sbjct:  147 HSGPKWIVLDGDIDPMWIESLNTVMDDNKVLTLASNERIPLNPTMRLVFEISHLRTATPATVSRAGILYINPADLGWSPQVSSWIDKREVQSEKANLTILFDKYLPSCLDVLK-SRFKKIIPIPEQSLVQMLCYLLECLLTP--ENTPPDSSKDL-YELYFVFASIWAFGGALFQDQLVDYRVEFSKWW--VAEFKTIKFPSQGTVFDYYIDPES 355          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3358.8989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLQ8_ECTSI9.790e-12385.09Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
F0XZT7_AURAN4.360e-8360.79Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A8J2SDE7_9STRA1.790e-7256.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A482SY26_9ARCH4.370e-7256.95Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
A0A329S004_9STRA1.410e-6857.92Dynein beta chain, flagellar outer arm n=23 Tax=Pe... [more]
A0A662XP47_9STRA3.090e-6856.36Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A6A4E4A7_9STRA6.520e-6856.31Dynein beta chain, flagellar outer arm (Fragment) ... [more]
K3X373_GLOUD6.590e-6856.68Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2D4BRA7_PYTIN3.070e-6757.21Sporangia induced dynein heavy chain n=2 Tax=Pythi... [more]
A0A0S7HQT5_9TELE4.120e-6752.09DYH9 (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3358contigH-paniculata_contig3358:897..4456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score394.4
Seed ortholog evalue3.5e-107
Seed eggNOG ortholog2880.D7FLQ8
Preferred nameODA-DHCB
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005929,GO:0031514,GO:0042995,GO:0043226,GO:0044464,GO:0120025
EggNOG free text desc.dynein light chain binding
EggNOG OGsCOG5245@1,KOG3595@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons7
Model size686
Cds size684
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.5965207-CDS-H-paniculata_contig3358:896..10071622930036.5965207-CDS-H-paniculata_contig3358:896..1007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 897..1007 +
1691481120.299571-CDS-H-paniculata_contig3358:896..10071691481120.299571-CDS-H-paniculata_contig3358:896..1007Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 897..1007 +
1622930036.6134474-CDS-H-paniculata_contig3358:1360..14891622930036.6134474-CDS-H-paniculata_contig3358:1360..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 1361..1489 +
1691481120.3141499-CDS-H-paniculata_contig3358:1360..14891691481120.3141499-CDS-H-paniculata_contig3358:1360..1489Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 1361..1489 +
1622930036.6282065-CDS-H-paniculata_contig3358:1787..18661622930036.6282065-CDS-H-paniculata_contig3358:1787..1866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 1788..1866 +
1691481120.3226626-CDS-H-paniculata_contig3358:1787..18661691481120.3226626-CDS-H-paniculata_contig3358:1787..1866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 1788..1866 +
1622930036.6416347-CDS-H-paniculata_contig3358:2258..23531622930036.6416347-CDS-H-paniculata_contig3358:2258..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 2259..2353 +
1691481120.3315747-CDS-H-paniculata_contig3358:2258..23531691481120.3315747-CDS-H-paniculata_contig3358:2258..2353Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 2259..2353 +
1622930036.6553235-CDS-H-paniculata_contig3358:2877..29521622930036.6553235-CDS-H-paniculata_contig3358:2877..2952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 2878..2952 +
1691481120.3477035-CDS-H-paniculata_contig3358:2877..29521691481120.3477035-CDS-H-paniculata_contig3358:2877..2952Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 2878..2952 +
1622930036.6706321-CDS-H-paniculata_contig3358:3570..37141622930036.6706321-CDS-H-paniculata_contig3358:3570..3714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 3571..3714 +
1691481120.359316-CDS-H-paniculata_contig3358:3570..37141691481120.359316-CDS-H-paniculata_contig3358:3570..3714Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 3571..3714 +
1622930036.683326-CDS-H-paniculata_contig3358:4403..44541622930036.683326-CDS-H-paniculata_contig3358:4403..4454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 4404..4454 +
1691481120.3693087-CDS-H-paniculata_contig3358:4403..44541691481120.3693087-CDS-H-paniculata_contig3358:4403..4454Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3358 4404..4454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3358.8989.1prot_H-paniculata_contig3358.8989.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3358 897..4454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3358.8989.1

>prot_H-paniculata_contig3358.8989.1 ID=prot_H-paniculata_contig3358.8989.1|Name=mRNA_H-paniculata_contig3358.8989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
QEWAPFGPHQNMKWVILDGDIDAVWIESMNTVMDDNKVLTLVSNERIPLT
ASMRMIFEIHSLKNATPATVSRAGILFVNETDIGWNPFMESWVQARPLES
EKVVLEGLFHRHVPAIIDILKKGKMEPLVPIPIISMVQAVCLLLEGLLPA
VVDKTAEASPRRLSMERMFLFAAMWAFGGALSSDSKCDNRRRFSQEWRKL
LPSKTVKLPEQGLVFDYFVNPENGEVAR
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mRNA from alignment at H-paniculata_contig3358:897..4456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3358.8989.1 ID=mRNA_H-paniculata_contig3358.8989.1|Name=mRNA_H-paniculata_contig3358.8989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3560bp|location=Sequence derived from alignment at H-paniculata_contig3358:897..4456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAATGGGCGCCGTTCGGCCCACATCAGAACATGAAGTGGGTAATTCT CGACGGTGACATCGATGCCGTATGGATTGAAAGCATGAACACAGTCATGG ATGACAACAAGGTGTGTGGAAACCACTCTTGTTCAGGACAGACACACAGG ATTCAAACTACTCCTTAGAACAATCACTTTCGTCGGAGAATTGCAGCGTC ATATTCCCCGAAACAACTGGCATCTTACATAGGTGTTTAACCCTTGTGCT CGAGTCACCATCTCCTGGCCCCACCTTCCTGTGCACTCGACTCACCTAGC TGGCTATTTCCTACATTATGCTCACCATTCGCCTGCCGCATGAATGTATT GGGTTCTCCTAATACAGTGCTCACCAGCACTTCCCCTACGTCACGCCTGT ATGCCCTCAGGCCTCTTCCTTCCATACCTCTCCCGTCCCCTACGTATGTT CGGTGCTGTGGTAGGTGCTAACCCTGGTGTCGAATGAGCGCATTCCGCTC ACTGCCTCCATGAGGATGATTTTCGAGATCCATTCCCTGAAGAACGCGAC ACCAGCTACGGTTAGCCGAGCGGGAATTCTTTTTGTGAACGAGGTACTGC ACCTGAGGCATTCAGTAGCAGATGTTTTCAATTGATAGTTTGCCCAGATG AACGCTCCTGCTCCGGTAGGTAGACTCAGCGACGTGTCTGCCAAAACTGC CCGGCTTAACTACGAGTACAAGCTTTGCGCCGTTCTATGGGAGAGAGCCT GTACCGTCGTCGAACTGTTTAGTATATATCCATGTCCCCGACGAAATGAA TCCTTGGTGCATTGGAACCTTTCGCAGAAAAAAAGCATCGCAACTTGTGT GTGACTGGCCCCACGCTGTGCCTGCCTCGCTCATCCCATAGACCGACATA GGCTGGAATCCCTTCATGGAGAGCTGGGTTCAGGCGAGGCCTCTGGAGAG CGAGAAGGTGGTGCTTGAAGGTGATCCAAGGGTAGTGGATCCGCTATGCC AACCATGTACCTGCTTACCCACGAACTATCTAAAATATCTGGCGTTTGAA ATATGTTGGATGGCCCACATACACCAATGCCAAGCTAAACCTTTGTCCGA ACCATTATCCTCCCCATTTTTGACGCTCCGCAAATATGCAACACTTGTCG CGTTTGATTTTGCTGAAATTGACCAGAATCTTCTGTATCTCCTTCACGTT TAACGATAGTATGGTATCTACACTTGCGGCGACACGCGGCTTCATTCGAG CACGCTCGCGTTGAAACGACTACATTTCAAATGCGTGTACTCTAAGTTGA ATATTGTGAGTCCTTCCAAACCCCTGTCGCCCTATTGTCATATATTGCGA TGTTCCCTTCAGGTCTGTTTCATAGGCATGTTCCGGCCATCATCGACATA TTGAAAAAGGGGAAGATGGAACCGCTCGTACCAATCCCAATCATCAGTAT GGTTCAGGTGAGATTTTCTAATCCATTTATCAGAGCATGTGACACAAAAT ACAGTCCTTCAAGTACTCATTTACCGCCTTTGGTCATATGCATGATCGAA GTTCGGCGTTTAGAAGTGGCCACATAAGGAAAATTGGTAAAATACGATAC TAAATGACGACAAGAAAACCCAAGCACAACGCCAAATAGGTCCAAACAAG TTTTACGTTTTGCTGTACACCTTATTCTTGGACAAGAAATCTCCCTCTAG ATATTGCTCTCACCATTGAGTGCTTGTCGTAGATAAGCCATTTAACATGC AATCCTACTTAAACTCGTCGTACGTTGCGTCGTAGTTGAAAATTTCCGGC AACCTATATCCAAATCCTTAATAATAGCACGTCGTTTATTCGCATCCGCG ATAACTCATTTTGTTTGGCTATAGAGTATCAGCTGTCTTAAGTGTAAGCG ACTGCCAGTGGCAAATATTCCCTCCGAAGCTTTTCAATCGCGCCGTTTGC TTCGGGTATTATGCCACATCATACGACGCAGGCAGTGTGCCTTCTGCTGG AAGGATTGCTGCCTGCCGTCGTCGACAAAACTGCTGAGGCGAGTCCTCGC CGCCTTGTGTATTGACACTAATAGTTCTGCATGGCAATCGCGCTATAGAA TGATGGCCGCAACAAAACAATTGTCGTAATGCTCTTTATGGCCGGTTTCA ACGTCTTGTCCAATGTGCCATTCTCGAGCCTCTGCTATGGTGGTAGGAAA ATGGGTCATTCCTGTCCTTTGATGCTTCTCGGCCAGTTTGCCGCTACAAG AAGATATTTCGAGGATCAGAAAACTGACGTGGTCATAATAGCACGGTACA CACATGCACTATTTAGTCATATATACGTATACTGTTTAGTCATATAAACA TACTTTTTAGTCATATAAGTTCTTTCATGTCGACGCACCTTAAAAGGTAG CCCTTAAATGAATGTATAAAGTAGAATATGCCTCGTCCTACTGGTAGATT CTGCAACGGGTTTACACGAAGTCAACTGAGTTCTTCCATACAGCAAATGG TAATACAGCAATAAATGCGCGTGGCTGCATTCTTGGTGAATCGGCCACAG CGTTGGACTACGTACCGCTATAATCCAGCTCAATACAGTCTTCTGTCCCC GTTGATTCCCCCGAGCCCGCGATGTGGAGTTCTCTATCCCCTGGATCCGT GTTTGCGTGCATTTCGAAACCCAGAGCATGGAACGGATGTTCCTATTTGC CGCGATGTGGGCATTCGGTGGCGCACTATCTTCGGACAGCAAGTGTGACA ATCGGCGTAGGTTCAGTCAAGAGTGGCGAAAGCTGTTGCCCTCGAAGACA GTCAAGCTACCTGAGCAGGTTGGTGGGGCTGCCTTGGCTCCTATTCGTTT TCCCGTGCATTAACGATGGTTTATCCAGCACTCTTCGGCGGGTTGGCCTT ACTCTGGTGATACTGTCCGGGAAGCTTCTAATGGAAAATTTATACTACTT GTAAAAATATCCGGCAGATCTTTCTACATATGCTGAGGTCATTGTTGAAG AGACAGGAACTGCCCGTAAAATATCCCGCAGATTCTCGTAGAGTTTGCTG AGTCCATTCCAGAAGAGATACAAGCAACTCGCGAAAGGTCGCATAGAACC TTTTAGATCAACCCAAACCAGTACACTACTCCATAGCATTGTCAGCGATA TTCCAACATGCCGCGAGAACTTGAATAGTACGTAGATCGCCCATTGTAGA TCCGCCCGCCATATAGTTTGTTTTGAGATGCCTCCCGGGTAGGATACTTT CGGCTCATATGTGTCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGT TTGCGCATGCCAAAAATTCCACCTGACCAAACATTTCCCACACGATACGC TCGTTTCTTCCAGAGATGAAAAGGAGAACGAAACTCGGTAACATTGGCCA GTAGAATGCCTTGTTGTGTATATTACGCTAGTGTGAATATTGATGTATGT TACACTAAAAAGTGTTTGGATCCGCTCATGACGATGCCTCCCTGTTTGCC GGGGCAGGGTCTCGTGTTTGACTACTTTGTCAATCCGGAGAACGGGGAGG TGGCCCGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3358:897..4456+

>mRNA_H-paniculata_contig3358.8989.1 ID=mRNA_H-paniculata_contig3358.8989.1|Name=mRNA_H-paniculata_contig3358.8989.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig3358:897..4456+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAATGGGCGCCGTTCGGCCCACATCAGAACATGAAGTGGGTAATTCT
CGACGGTGACATCGATGCCGTATGGATTGAAAGCATGAACACAGTCATGG
ATGACAACAAGCAGGAATGGGCGCCGTTCGGCCCACATCAGAACATGAAG
TGGGTAATTCTCGACGGTGACATCGATGCCGTATGGATTGAAAGCATGAA
CACAGTCATGGATGACAACAAGGTGCTAACCCTGGTGTCGAATGAGCGCA
TTCCGCTCACTGCCTCCATGAGGATGATTTTCGAGATCCATTCCCTGAAG
AACGCGACACCAGCTACGGTTAGCCGAGCGGGAATTCTTTTTGTGAACGA
GGTGCTAACCCTGGTGTCGAATGAGCGCATTCCGCTCACTGCCTCCATGA
GGATGATTTTCGAGATCCATTCCCTGAAGAACGCGACACCAGCTACGGTT
AGCCGAGCGGGAATTCTTTTTGTGAACGAGACCGACATAGGCTGGAATCC
CTTCATGGAGAGCTGGGTTCAGGCGAGGCCTCTGGAGAGCGAGAAGGTGG
TGCTTGAAGACCGACATAGGCTGGAATCCCTTCATGGAGAGCTGGGTTCA
GGCGAGGCCTCTGGAGAGCGAGAAGGTGGTGCTTGAAGGTCTGTTTCATA
GGCATGTTCCGGCCATCATCGACATATTGAAAAAGGGGAAGATGGAACCG
CTCGTACCAATCCCAATCATCAGTATGGTTCAGGTCTGTTTCATAGGCAT
GTTCCGGCCATCATCGACATATTGAAAAAGGGGAAGATGGAACCGCTCGT
ACCAATCCCAATCATCAGTATGGTTCAGGCAGTGTGCCTTCTGCTGGAAG
GATTGCTGCCTGCCGTCGTCGACAAAACTGCTGAGGCGAGTCCTCGCCGC
CTTGCAGTGTGCCTTCTGCTGGAAGGATTGCTGCCTGCCGTCGTCGACAA
AACTGCTGAGGCGAGTCCTCGCCGCCTTAGCATGGAACGGATGTTCCTAT
TTGCCGCGATGTGGGCATTCGGTGGCGCACTATCTTCGGACAGCAAGTGT
GACAATCGGCGTAGGTTCAGTCAAGAGTGGCGAAAGCTGTTGCCCTCGAA
GACAGTCAAGCTACCTGAGCAGAGCATGGAACGGATGTTCCTATTTGCCG
CGATGTGGGCATTCGGTGGCGCACTATCTTCGGACAGCAAGTGTGACAAT
CGGCGTAGGTTCAGTCAAGAGTGGCGAAAGCTGTTGCCCTCGAAGACAGT
CAAGCTACCTGAGCAGGGTCTCGTGTTTGACTACTTTGTCAATCCGGAGA
ACGGGGAGGTGGCCCGTGGTCTCGTGTTTGACTACTTTGTCAATCCGGAG
AACGGGGAGGTGGCCCGT
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