mRNA_H-paniculata_contig33579.8988.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33579.8988.1
Unique NamemRNA_H-paniculata_contig33579.8988.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A371FV98_MUCPR (Uncharacterized protein (Fragment) n=1 Tax=Mucuna pruriens TaxID=157652 RepID=A0A371FV98_MUCPR)

HSP 1 Score: 52.0 bits (123), Expect = 1.560e-6
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   10 SQQRHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEED 153
            +Q R KLDD +   V +GYD +S +Y++YNP N    +SR+V FDEE+
Sbjct:   67 NQGRSKLDDRSVKHVFIGYDANSKDYKLYNPNNGKMIVSRDVEFDEEE 114          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A232EHT6_9HYME (Integrase catalytic domain-containing protein n=1 Tax=Trichomalopsis sarcophagae TaxID=543379 RepID=A0A232EHT6_9HYME)

HSP 1 Score: 51.6 bits (122), Expect = 4.350e-6
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   19 RHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEE--DFVTGHR 171
            R KLDD+A   +L+GY ++S NYR+Y+ E K+  +SR+V FDE+  D  T  R
Sbjct:   95 RRKLDDKARKAILVGYQDESSNYRLYDAEKKTIVVSRDVVFDEKSTDECTNER 147          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A7R8YSA9_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8YSA9_HERIL)

HSP 1 Score: 51.2 bits (121), Expect = 6.100e-6
Identity = 22/44 (50.00%), Postives = 32/44 (72.73%), Query Frame = 1
Query:   19 RHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEE 150
            R KLD +A   +L+GY  DS NYR+YNP+N   ++SR+V F+E+
Sbjct:  340 RKKLDPKATKLILVGYQNDSINYRLYNPQNNKIYISRDVIFNEK 383          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A7R8YXC2_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8YXC2_HERIL)

HSP 1 Score: 50.1 bits (118), Expect = 1.560e-5
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1
Query:   19 RHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEE 150
            R KLD +    +L+GY  DS NYR+YNP+N   ++SR+V F+E+
Sbjct:   93 RKKLDPKVTKLILVGYQNDSMNYRLYNPQNNKIYMSRDVIFNEK 136          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: UPI001CC3DA11 (uncharacterized protein LOC110627805 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC3DA11)

HSP 1 Score: 49.7 bits (117), Expect = 2.180e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1
Query:   25 KLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEED 153
            KLDD +  G+LLGY++ S  YRVYNP  +   +SR+V F+E +
Sbjct:  766 KLDDRSEKGILLGYEDGSKAYRVYNPSKRKILISRDVIFEENE 808          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A7R8UG25_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UG25_HERIL)

HSP 1 Score: 48.9 bits (115), Expect = 4.070e-5
Identity = 22/53 (41.51%), Postives = 34/53 (64.15%), Query Frame = 1
Query:   19 RHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEEDFVTGHRGQ 177
            R KLD +A   +L+GY  DS N R+YNP+N   ++SR+V F+E+  +    G+
Sbjct:  571 RKKLDPKATKLILVGYQNDSMNCRLYNPQNNKIYISRDVIFNEKSQLGSEIGK 623          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A5D3CVS4_CUCME (Integrase n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3CVS4_CUCME)

HSP 1 Score: 48.5 bits (114), Expect = 5.570e-5
Identity = 21/49 (42.86%), Postives = 36/49 (73.47%), Query Frame = 1
Query:    7 QSQQRHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEED 153
            Q+Q R KLDD++   +++GY+E+S  YR+YNP ++   +SR+V F E++
Sbjct:  456 QNQLRGKLDDKSEKCIMVGYNENSKAYRLYNPVSRKIIISRDVIFSEDE 504          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A7R8UN13_HERIL (Hypothetical protein n=1 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8UN13_HERIL)

HSP 1 Score: 48.1 bits (113), Expect = 7.570e-5
Identity = 20/42 (47.62%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   25 KLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEE 150
            KLD +A   +L+GY  +S NYR+YNP+N   ++SR+V F+E+
Sbjct:  246 KLDPKATKLILVGYQNNSMNYRLYNPQNNKIYISRDVIFNEK 287          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein n=2 Tax=Oryza sativa TaxID=4530 RepID=Q7XPB1_ORYSJ)

HSP 1 Score: 48.1 bits (113), Expect = 7.660e-5
Identity = 21/42 (50.00%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   25 KLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEE 150
            KLDD +   VLLGY++ S  YR+Y+P ++  H+SR+V FDE+
Sbjct:  772 KLDDRSAPMVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDED 813          
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Match: A0A7D9JUR0_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9JUR0_PARCT)

HSP 1 Score: 46.2 bits (108), Expect = 9.010e-5
Identity = 17/47 (36.17%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   19 RHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEEDFV 159
            + K D +    + +GY   S  YR+Y+P+ +  H+SR+V FDE++F+
Sbjct:   23 KKKWDSKTKKCIFVGYSISSKGYRLYDPKTRKLHISRDVLFDEDEFI 69          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33579.8988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A371FV98_MUCPR1.560e-647.92Uncharacterized protein (Fragment) n=1 Tax=Mucuna ... [more]
A0A232EHT6_9HYME4.350e-647.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A7R8YSA9_HERIL6.100e-650.00Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A7R8YXC2_HERIL1.560e-547.73Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
UPI001CC3DA112.180e-548.84uncharacterized protein LOC110627805 n=1 Tax=Manih... [more]
A0A7R8UG25_HERIL4.070e-541.51Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
A0A5D3CVS4_CUCME5.570e-542.86Integrase n=2 Tax=Cucumis melo var. makuwa TaxID=1... [more]
A0A7R8UN13_HERIL7.570e-547.62Hypothetical protein n=1 Tax=Hermetia illucens Tax... [more]
Q7XPB1_ORYSJ7.660e-550.00OSJNBb0026E15.10 protein n=2 Tax=Oryza sativa TaxI... [more]
A0A7D9JUR0_PARCT9.010e-536.17Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33579contigH-paniculata_contig33579:534..713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size180
Cds size180
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.5414114-CDS-H-paniculata_contig33579:533..7131622930036.5414114-CDS-H-paniculata_contig33579:533..713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33579 534..713 -
1691481120.2892604-CDS-H-paniculata_contig33579:533..7131691481120.2892604-CDS-H-paniculata_contig33579:533..713Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33579 534..713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33579.8988.1prot_H-paniculata_contig33579.8988.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33579 534..713 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33579.8988.1

>prot_H-paniculata_contig33579.8988.1 ID=prot_H-paniculata_contig33579.8988.1|Name=mRNA_H-paniculata_contig33579.8988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MFQSQQRHKLDDEAWAGVLLGYDEDSPNYRVYNPENKSAHLSRNVRFDEE
DFVTGHRGQ*
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mRNA from alignment at H-paniculata_contig33579:534..713-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33579.8988.1 ID=mRNA_H-paniculata_contig33579.8988.1|Name=mRNA_H-paniculata_contig33579.8988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=180bp|location=Sequence derived from alignment at H-paniculata_contig33579:534..713- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGTCACAGCAGAGACATAAGCTCGACGACGAAGCATGGGCAGG GGTGTTACTGGGGTACGACGAGGACAGCCCGAATTATCGCGTATATAACC CGGAAAACAAGAGCGCCCATTTGAGCAGGAACGTGAGATTTGACGAAGAG GACTTCGTAACGGGCCATCGCGGACAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33579:534..713-

>mRNA_H-paniculata_contig33579.8988.1 ID=mRNA_H-paniculata_contig33579.8988.1|Name=mRNA_H-paniculata_contig33579.8988.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig33579:534..713- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCAGTCACAGCAGAGACATAAGCTCGACGACGAAGCATGGGCAGG
GGTGTTACTGGGGTACGACGAGGACAGCCCGAATTATCGCGTATATAACC
CGGAAAACAAGAGCGCCCATTTGAGCAGGAACGTGAGATTTGACGAAGAG
GACTTCGTAACGGGCCATCGCGGACAGTAGATGTTCCAGTCACAGCAGAG
ACATAAGCTCGACGACGAAGCATGGGCAGGGGTGTTACTGGGGTACGACG
AGGACAGCCCGAATTATCGCGTATATAACCCGGAAAACAAGAGCGCCCAT
TTGAGCAGGAACGTGAGATTTGACGAAGAGGACTTCGTAACGGGCCATCG
CGGACAGTAG
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