mRNA_H-paniculata_contig3354.8981.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3354.8981.1
Unique NamemRNA_H-paniculata_contig3354.8981.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3354.8981.1 vs. uniprot
Match: A0A6H5KE01_9PHAE (Retrotrans_gag domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE01_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 1.240e-25
Identity = 66/176 (37.50%), Postives = 100/176 (56.82%), Query Frame = 2 
Query:  284 LKTAAITVCPNDVRDIPHLTDDPALDVAAILERYRTVIGLKARAIDPNDTELADNLAFRHIRLICDGSVLALYHQLMDGTIDWKAAGMNAESPHKPGPFTPPASWEDVKAALFDILTPANAIELCALEITSIRQTNDESVSDYALRYHALLARLESVIARATKRSGIQHTAWIAFT 811
            L+ A +++   D+R +P LT D   +V  IL+ +RTV+GLKA A++  D+  AD +A +H+ L+  G VL L  Q++ G ID   A    E P + G F PP +W+ + + L D L PAN++E  A  + +  Q   ESVS YALR+  ++AR ++ + R   R     TAW   T
Sbjct:  170 LQAATVSISAADLRSVPKLTGDRTENVIEILKHFRTVVGLKAAAVN-TDSSFADGVALKHVALVGTGEVLTLIQQILSGQIDCSKASTFTE-PEEKGSFPPPTTWDAMCSVLLDSLLPANSVEEEAHNLATFVQGPQESVSSYALRFRTVMARFQAAVERDGSR-----TAWNCMT 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3354.8981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KE01_9PHAE1.240e-2537.50Retrotrans_gag domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3354contigH-paniculata_contig3354:2016..5747 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1801
Cds size1044
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3354.8981.1prot_H-paniculata_contig3354.8981.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3354 2278..3321 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.5963037-UTR-H-paniculata_contig3354:2015..22771622930035.5963037-UTR-H-paniculata_contig3354:2015..2277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3354 2016..2277 +
1691481119.9304326-UTR-H-paniculata_contig3354:2015..22771691481119.9304326-UTR-H-paniculata_contig3354:2015..2277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3354 2016..2277 +
1622930035.6215792-UTR-H-paniculata_contig3354:3321..33441622930035.6215792-UTR-H-paniculata_contig3354:3321..3344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3354 3322..3344 +
1691481119.951666-UTR-H-paniculata_contig3354:3321..33441691481119.951666-UTR-H-paniculata_contig3354:3321..3344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3354 3322..3344 +
1622930035.6322987-UTR-H-paniculata_contig3354:5275..57471622930035.6322987-UTR-H-paniculata_contig3354:5275..5747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3354 5276..5747 +
1691481119.9618535-UTR-H-paniculata_contig3354:5275..57471691481119.9618535-UTR-H-paniculata_contig3354:5275..5747Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3354 5276..5747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.6070693-CDS-H-paniculata_contig3354:2277..33211622930035.6070693-CDS-H-paniculata_contig3354:2277..3321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3354 2278..3321 +
1691481119.9417624-CDS-H-paniculata_contig3354:2277..33211691481119.9417624-CDS-H-paniculata_contig3354:2277..3321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3354 2278..3321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3354.8981.1

>prot_H-paniculata_contig3354.8981.1 ID=prot_H-paniculata_contig3354.8981.1|Name=mRNA_H-paniculata_contig3354.8981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=348bp
MTRSLKQLKTAAITVCPNDVRDIPHLTDDPALDVAAILERYRTVIGLKAR
AIDPNDTELADNLAFRHIRLICDGSVLALYHQLMDGTIDWKAAGMNAESP
HKPGPFTPPASWEDVKAALFDILTPANAIELCALEITSIRQTNDESVSDY
ALRYHALLARLESVIARATKRSGIQHTAWIAFTVALWQHGLHPNLQVLQL
QDKPPLHLQQALDCARRHEAAGLSGNVSSLAWTLQPNMHAVAQLDRQVPR
GSRHVHRERGERDNRRGLKRTCGKRPAPSSPPPPECPSWRGSAGGVTKSR
EPCTFPGCRSPASHTTRNCFAKQRAARKRRQSKASDTGPTSRPTREG*
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mRNA from alignment at H-paniculata_contig3354:2016..5747+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3354.8981.1 ID=mRNA_H-paniculata_contig3354.8981.1|Name=mRNA_H-paniculata_contig3354.8981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3732bp|location=Sequence derived from alignment at H-paniculata_contig3354:2016..5747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTAGACTTACGTAAGTCTGGGGATGGGGGTCAGCTTGGGGATGGGGGTC
AGCTTGGGGCTGGGTGTGCCGACACTGGTTCACCCAGTGCGGTCAGTTCC
GTTGGCGGGCAAGTCGTGGGCGTTGCTGTTGGTTGTAATGGGTCCACACG
TGATGCTACATCGTCTGATAGTTCCGCTTCGTCTCTTCAATTTCAAGCAC
CGACGTCTTATGTGCCCCCTGTTCAGTCGTCTGCCGTATCAGCGACACCC
GGTTTGTCTGACATGACTCGTTCGCTCAAGCAGCTGAAAACTGCTGCTAT
TACCGTTTGCCCGAACGATGTTCGCGATATCCCCCATTTAACTGACGATC
CTGCACTTGATGTCGCCGCCATCCTTGAACGTTACCGAACGGTGATTGGC
TTGAAGGCTCGGGCCATTGATCCCAATGATACCGAGTTGGCCGACAATCT
TGCTTTCCGGCACATACGCCTTATATGTGATGGATCAGTGTTGGCGTTGT
ACCACCAGTTGATGGATGGTACGATTGATTGGAAGGCTGCTGGAATGAAC
GCAGAATCGCCCCACAAACCGGGACCTTTTACGCCGCCCGCATCGTGGGA
GGACGTTAAGGCTGCACTATTCGACATTCTCACTCCAGCTAACGCGATTG
AACTTTGTGCACTGGAGATAACTTCCATTAGACAGACTAATGACGAGAGC
GTTTCAGACTATGCTCTTCGCTATCATGCATTGCTCGCCCGCTTAGAGTC
TGTGATCGCTCGTGCGACTAAGCGTTCCGGCATTCAGCATACAGCATGGA
TTGCCTTCACCGTGGCTCTTTGGCAGCACGGCTTGCACCCTAATCTGCAG
GTATTGCAATTACAGGACAAGCCGCCTTTGCACCTCCAGCAAGCCCTCGA
CTGTGCCCGTCGGCATGAAGCTGCCGGCTTGTCTGGTAACGTTAGCTCAC
TTGCATGGACCCTACAACCCAATATGCATGCCGTCGCCCAGTTGGACCGC
CAGGTGCCCCGTGGCTCGCGCCACGTTCACCGTGAGCGTGGCGAGCGTGA
TAACCGCCGCGGTCTGAAACGTACCTGCGGCAAACGCCCCGCCCCCTCTT
CCCCACCCCCTCCCGAATGTCCGTCTTGGCGAGGTTCTGCTGGTGGCGTC
ACAAAATCACGAGAACCTTGCACCTTCCCTGGATGCCGGTCTCCCGCGAG
CCACACTACGCGAAACTGCTTTGCGAAGCAGAGAGCCGCTAGGAAACGTC
GTCAGAGCAAGGCTTCCGACACCGGCCCAACCAGCCGACCAACGCGGGAA
GGATGAAGAATGAGGGCGCCCAGCTAGTGGTACGTATCGTCTAGTTGGGT
CACCCCCCTATATTGTCCGTACAGTAGATCTTAGAGGCGTCAAGAGGCAC
ACTGTCTCTTCCGTCTGTAGCCGTGCCTGCGCTAGATCGTGCCAAAGACA
AGAAAGTTTGTTTTACCGAGGTTCTGTCATTTTATCGTTTCGCAGTTGGT
GGTGCACCTTCACCCCGTAAGCCTTTGATCGCCAGCGCGCGTTACTATTT
GTCGCGGTGTGCACTTTGTTCGCACCCGGCCGCAATCCCCAGGGTGTCTG
TAGCTTTCGTTTCTCAGACGCGTTCTCACACCAACTCCGACTGTAACCCT
ACCGCGCCACAGTCCGTATCGTCTGGCACTGCGGTTTTTCCGCCCGATGG
GGCATGATACAGCTCTAGTTTGGCGTAGAAACATCGCTCACTTCCTCTTT
GTCCTCGTCGCGACGCGTGCGGGTTGCTGGTTCAGTTAACAGGATTTCCG
TAGACACTATCACATATTGACACTGCTATAGATATTTGTCTCGTATCACT
CGCACGGTTGAGTTCAAACCCTACTTTGCGGAATATCGCTTTACACCCTA
TTCCCCCCGGCGCTACCAATCTGCGCACAGCGGATATTTCTCCTCTTAGC
GTTCTTGGGTTTGCGAGGTTTGATGTTACCCTGGGGGGTATAACACATTC
AATAGACGCATTGGCCGTTGATTGACTTGGCCTCGACGTTTTGCTGTTAG
ATAATCACACCATGTCTCAAATTGGTGCCGTATTCGATTGTGAGCAAGAG
ATTCTTTCCTTTTCTCCCACTCGAAAATCTATTTCAGCTATTCATCGCCG
ATCGCAGCCCATGTCTGCTCACAGTCGTCCGTCTGGATCTAAGTTTTCAG
TCGTGATATGAAGTTGCAGTTAGCTTTTGAGTTAGCGCACCGTAATATCG
GAGAGCGGTCGGATAAGCAGCAGGAAGGAAACCGTCAACTGTTCCTGGCT
TCGTCGTTGGTGATCGTGTCTTGTTACATGGCCCATCTTCTGAGTCCGAC
GGTCCGAACCCCAAGCTTTTCAGTCCTTGGCGCGGTCCGTACACCGTCCA
GGCACAAATATTTTTTGTTTACGTATCTTGTTTCCAAGGATGGCGAACAC
GTAGAGCCGCCGGCGGTCGGCTAAAACTCAGCGTGACGTTGACAAGGTTG
ATGATGTGTTCCTTGGAACTAGGCTACCTATCGCTGACCTTAGATGCCTC
AGTAGTCAACGTCAAGATTGGACCCTTTTTACCGTAGAGGGCGTTGATGT
CCATAAACGGGGGGGTAGGCGCGGCATCTCGTACGAATTTTCAGTTGTCA
CTTTCGGCTTGAAGGATATCCTCGTCATCTAGGTATTTGGCGTCACGTGC
GAGCCGTTCCGCAATGCTGCGACCTCATCGATTCCTACCGTTCTCGAGCG
TTATTGAATAGTCCTTCGTCCTTTGACCCACCACAGCGGAAACCTACCGT
TCTTACCGGTGCTCGTTGACACCGTGTCACGTTTTCCCGTATGATGGATC
TATCCCTACTTTCGGCGTAGGCAACCGCCGACCGTTCCATCCGCTGTCTT
ATGACCCATCACCTGGCGTTGCCCTGGCTGTCCTCAAAATGAAGTTGTTT
TTTGTAAAGGTATTTGGTGCGCGCCGAGTGAGGGGCGATACTGATTTTCT
CCTTCTCGTGGCTTTTGTTTCCCGTTCCCGTGCCTCTTACCGTGCACGGA
GTACTGAGCTTGTTTTCTTCAATATCTATGTTACTATTTTTGGTTGAACT
CCCACCGAGGAGCTTTTGGTGACCTCGTTTTTGTTTGTTGTGTGGCAAAA
TTCGCGAGGAAAATTGTTTGTTGTCTCGTACCCATGGTTGATGTTTCCGG
TTTCTCAACGCCTCGTTCCCTTTGTATTGTTCCTTCCGCGTGCATCCTCT
CACTCGTCAGTAATAGGAGGGCCTCACATGTGGTAGGATCAAGGGAGCTG
TCTCGTGACGGCTACAAAATCAATACCGGACGTCATCATCACCACGGCCC
GTGCTTATTCCGTAGCCGTGCTTACTCCGTAGCTGGACCGAGTTTTAGTT
GCGTTTTGTTGCTTCGATCGATGGGAATGGCTTTCTTGGTTCTTGGCGCG
TGTATAATTGCACTTGACGTATCTCAGAGCCAGCTCCATTTGCTGAACGC
GCTCCGTACAGCCAGGATTCTTTCGTAGTGGAGTTAAGAGTTGCGTGCGT
TCGCTCCCTGCACGCCTCGTATTGCCGACGTAAGGTATTTGTATTGTAAT
CGCTTTCTATTTGATTTTTCTTCCTCGAGCCAGGTGTGCTCTTGCATAGA
CCTTGTGTTTCTCGGTCCAGTAGAATACGTTGCTTGTGTTCGACGGTCAA
TTCACGCGTTTTCCTCGCATTTTGTGCTATAT
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Coding sequence (CDS) from alignment at H-paniculata_contig3354:2016..5747+

>mRNA_H-paniculata_contig3354.8981.1 ID=mRNA_H-paniculata_contig3354.8981.1|Name=mRNA_H-paniculata_contig3354.8981.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2088bp|location=Sequence derived from alignment at H-paniculata_contig3354:2016..5747+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCGTTCGCTCAAGCAGCTGAAAACTGCTGCTATTACCGTTTGCCC
GAACGATGTTCGCGATATCCCCCATTTAACTGACGATCCTGCACTTGATG
TCGCCGCCATCCTTGAACGTTACCGAACGGTGATTGGCTTGAAGGCTCGG
GCCATTGATCCCAATGATACCGAGTTGGCCGACAATCTTGCTTTCCGGCA
CATACGCCTTATATGTGATGGATCAGTGTTGGCGTTGTACCACCAGTTGA
TGGATGGTACGATTGATTGGAAGGCTGCTGGAATGAACGCAGAATCGCCC
CACAAACCGGGACCTTTTACGCCGCCCGCATCGTGGGAGGACGTTAAGGC
TGCACTATTCGACATTCTCACTCCAGCTAACGCGATTGAACTTTGTGCAC
TGGAGATAACTTCCATTAGACAGACTAATGACGAGAGCGTTTCAGACTAT
GCTCTTCGCTATCATGCATTGCTCGCCCGCTTAGAGTCTGTGATCGCTCG
TGCGACTAAGCGTTCCGGCATTCAGCATACAGCATGGATTGCCTTCACCG
TGGCTCTTTGGCAGCACGGCTTGCACCCTAATCTGCAGGTATTGCAATTA
CAGGACAAGCCGCCTTTGCACCTCCAGCAAGCCCTCGACTGTGCCCGTCG
GCATGAAGCTGCCGGCTTGTCTGGTAACGTTAGCTCACTTGCATGGACCC
TACAACCCAATATGCATGCCGTCGCCCAGTTGGACCGCCAGGTGCCCCGT
GGCTCGCGCCACGTTCACCGTGAGCGTGGCGAGCGTGATAACCGCCGCGG
TCTGAAACGTACCTGCGGCAAACGCCCCGCCCCCTCTTCCCCACCCCCTC
CCGAATGTCCGTCTTGGCGAGGTTCTGCTGGTGGCGTCACAAAATCACGA
GAACCTTGCACCTTCCCTGGATGCCGGTCTCCCGCGAGCCACACTACGCG
AAACTGCTTTGCGAAGCAGAGAGCCGCTAGGAAACGTCGTCAGAGCAAGG
CTTCCGACACCGGCCCAACCAGCCGACCAACGCGGGAAGGATGAATGACT
CGTTCGCTCAAGCAGCTGAAAACTGCTGCTATTACCGTTTGCCCGAACGA
TGTTCGCGATATCCCCCATTTAACTGACGATCCTGCACTTGATGTCGCCG
CCATCCTTGAACGTTACCGAACGGTGATTGGCTTGAAGGCTCGGGCCATT
GATCCCAATGATACCGAGTTGGCCGACAATCTTGCTTTCCGGCACATACG
CCTTATATGTGATGGATCAGTGTTGGCGTTGTACCACCAGTTGATGGATG
GTACGATTGATTGGAAGGCTGCTGGAATGAACGCAGAATCGCCCCACAAA
CCGGGACCTTTTACGCCGCCCGCATCGTGGGAGGACGTTAAGGCTGCACT
ATTCGACATTCTCACTCCAGCTAACGCGATTGAACTTTGTGCACTGGAGA
TAACTTCCATTAGACAGACTAATGACGAGAGCGTTTCAGACTATGCTCTT
CGCTATCATGCATTGCTCGCCCGCTTAGAGTCTGTGATCGCTCGTGCGAC
TAAGCGTTCCGGCATTCAGCATACAGCATGGATTGCCTTCACCGTGGCTC
TTTGGCAGCACGGCTTGCACCCTAATCTGCAGGTATTGCAATTACAGGAC
AAGCCGCCTTTGCACCTCCAGCAAGCCCTCGACTGTGCCCGTCGGCATGA
AGCTGCCGGCTTGTCTGGTAACGTTAGCTCACTTGCATGGACCCTACAAC
CCAATATGCATGCCGTCGCCCAGTTGGACCGCCAGGTGCCCCGTGGCTCG
CGCCACGTTCACCGTGAGCGTGGCGAGCGTGATAACCGCCGCGGTCTGAA
ACGTACCTGCGGCAAACGCCCCGCCCCCTCTTCCCCACCCCCTCCCGAAT
GTCCGTCTTGGCGAGGTTCTGCTGGTGGCGTCACAAAATCACGAGAACCT
TGCACCTTCCCTGGATGCCGGTCTCCCGCGAGCCACACTACGCGAAACTG
CTTTGCGAAGCAGAGAGCCGCTAGGAAACGTCGTCAGAGCAAGGCTTCCG
ACACCGGCCCAACCAGCCGACCAACGCGGGAAGGATGA
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