mRNA_H-paniculata_contig33537.8980.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33537.8980.1
Unique NamemRNA_H-paniculata_contig33537.8980.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A6H5K868_9PHAE (Coatomer_WDAD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K868_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.130e-31
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:   10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
            QVE+CL+LLVS+GRVPEA FMARTYLPSAMGRLV LWKKDLA VS KA+QALA+PVEYPNMFDDL WALK
Sbjct:  201 QVEECLELLVSAGRVPEAAFMARTYLPSAMGRLVELWKKDLATVSAKASQALANPVEYPNMFDDLDWALK 270          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A7S2SR98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SR98_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.570e-24
Identity = 47/71 (66.20%), Postives = 60/71 (84.51%), Query Frame = 1
Query:    7 NQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
            N+VE+C++LLV + RVPEA FMARTY+PS M ++V  W++DLAKVS +AA+ALADP EYPN+F DL WALK
Sbjct:  770 NEVEECINLLVETDRVPEAAFMARTYMPSMMSKIVVQWREDLAKVSERAAKALADPGEYPNLFPDLDWALK 840          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A835YRX4_9STRA (Coatomer WD associated region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRX4_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.390e-23
Identity = 48/70 (68.57%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
            ++E+CL+LLV +GR+PEA FMARTYLPS M RLV LWKKDL  VS KAA+ALADP +YPN+F+DL  AL+
Sbjct:  749 RLEECLELLVKAGRLPEAAFMARTYLPSEMPRLVELWKKDLQSVSVKAAEALADPSQYPNLFEDLDVALR 818          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A7S2G0J9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G0J9_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 4.230e-23
Identity = 42/69 (60.87%), Postives = 57/69 (82.61%), Query Frame = 1
Query:   10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
            ++E+C++LL+ +GR+PEA F+ARTY+PS M ++V  WK DL KVS +AAQALADP EYPN+F DL WA+
Sbjct:  224 RIEECIELLMQTGRIPEAAFLARTYMPSEMPQIVIKWKADLTKVSERAAQALADPAEYPNLFPDLDWAV 292          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: UPI000C1CDDFA (coatomer subunit beta'-2-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CDDFA)

HSP 1 Score: 94.0 bits (232), Expect = 4.650e-23
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDD 201
            M  ++EDCL LLV S R+PEA  MAR+YLPS +  +VALW+KDL K++ KAA++LADP EYPN+F+D
Sbjct:    1 MSGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLNKINPKAAESLADPEEYPNLFED 67          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A6J0JHN3_RAPSA (coatomer subunit beta'-2-like n=1 Tax=Raphanus sativus TaxID=3726 RepID=A0A6J0JHN3_RAPSA)

HSP 1 Score: 95.1 bits (235), Expect = 6.340e-23
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
            M  ++EDCL LLV S R+PEA  MAR+YLPS +  +VALW+KDL+KV++KAA++LADP EYPN+F+D   AL
Sbjct:    1 MLGRLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYPNLFEDWQVAL 72          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A392NQL5_9FABA (Coatomer subunit beta'-2-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NQL5_9FABA)

HSP 1 Score: 93.6 bits (231), Expect = 1.940e-22
Identity = 43/72 (59.72%), Postives = 57/72 (79.17%), Query Frame = 1
Query:    1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
            M  ++EDCL LLV S R+PEA  MAR+YLPS +  +VA+W+KDL+KV+ KAA++LADP EYPN+F+D   AL
Sbjct:   50 MLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVAIWRKDLSKVNPKAAESLADPEEYPNLFEDWQVAL 121          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: UPI00053BB939 (coatomer subunit beta'-2-like isoform X1 n=2 Tax=Camelina sativa TaxID=90675 RepID=UPI00053BB939)

HSP 1 Score: 95.1 bits (235), Expect = 1.960e-22
Identity = 44/72 (61.11%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWAL 216
            M  ++EDCL LLV S R+PEA  MAR+YLPS +  +VALW+KDL+KV++KAA++LADP EYPN+F+D   AL
Sbjct:   50 MLGKLEDCLQLLVESNRIPEAALMARSYLPSKVSEIVALWRKDLSKVNSKAAESLADPEEYPNLFEDWQVAL 121          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A7S3HIJ6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIJ6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 3.420e-22
Identity = 41/70 (58.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
            QVE+ + LL+ + R+PEA FMARTY+PS + R++ +WK+DL  ++ KAA+ALADPV+YPN+F DL WALK
Sbjct:  114 QVEEAIQLLIDANRIPEAAFMARTYMPSQISRVLEIWKRDLKTINEKAAEALADPVKYPNLFPDLSWALK 183          
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Match: A0A250X594_9CHLO (Coatomer subunit beta' n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X594_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 4.250e-22
Identity = 44/70 (62.86%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   10 QVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTKAAQALADPVEYPNMFDDLPWALK 219
            Q+E C++LLVS+ R+PEA F  RTYLPS M  +  +WKKDL K + KAA+ALADP EYPN+F DL WALK
Sbjct:  757 QLESCMELLVSAKRLPEAAFFCRTYLPSKMSEVTKIWKKDLEKQNPKAAEALADPAEYPNLFPDLEWALK 826          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33537.8980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K868_9PHAE1.130e-3185.71Coatomer_WDAD domain-containing protein n=1 Tax=Ec... [more]
A0A7S2SR98_9STRA1.570e-2466.20Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A835YRX4_9STRA1.390e-2368.57Coatomer WD associated region-domain-containing pr... [more]
A0A7S2G0J9_9STRA4.230e-2360.87Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
UPI000C1CDDFA4.650e-2361.19coatomer subunit beta'-2-like n=1 Tax=Olea europae... [more]
A0A6J0JHN3_RAPSA6.340e-2361.11coatomer subunit beta'-2-like n=1 Tax=Raphanus sat... [more]
A0A392NQL5_9FABA1.940e-2259.72Coatomer subunit beta'-2-like (Fragment) n=1 Tax=T... [more]
UPI00053BB9391.960e-2261.11coatomer subunit beta'-2-like isoform X1 n=2 Tax=C... [more]
A0A7S3HIJ6_9STRA3.420e-2258.57Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A250X594_9CHLO4.250e-2262.86Coatomer subunit beta' n=1 Tax=Chlamydomonas eusti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33537contigH-paniculata_contig33537:805..1618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score99.0
Seed ortholog evalue9.8e-19
Seed eggNOG ortholog50452.A0A087HJU7
KEGG koko:K17302
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006891,GO:0008104,GO:0008150,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0031090,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805
EggNOG free text desc.The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
EggNOG OGs37HJ2@33090,3GA3V@35493,3HVS8@3699,KOG0276@1,KOG0276@2759
COG Functional cat.U
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Exons2
Model size219
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.5440624-CDS-H-paniculata_contig33537:804..9541622930035.5440624-CDS-H-paniculata_contig33537:804..954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33537 805..954 +
1691481119.9042103-CDS-H-paniculata_contig33537:804..9541691481119.9042103-CDS-H-paniculata_contig33537:804..954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33537 805..954 +
1622930035.5579941-CDS-H-paniculata_contig33537:1549..16181622930035.5579941-CDS-H-paniculata_contig33537:1549..1618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33537 1550..1618 +
1691481119.9205542-CDS-H-paniculata_contig33537:1549..16181691481119.9205542-CDS-H-paniculata_contig33537:1549..1618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33537 1550..1618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33537.8980.1prot_H-paniculata_contig33537.8980.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33537 805..1618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33537.8980.1

>prot_H-paniculata_contig33537.8980.1 ID=prot_H-paniculata_contig33537.8980.1|Name=mRNA_H-paniculata_contig33537.8980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
MGNQVEDCLDLLVSSGRVPEACFMARTYLPSAMGRLVALWKKDLAKVSTK
AAQALADPVEYPNMFDDLPWALK
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mRNA from alignment at H-paniculata_contig33537:805..1618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33537.8980.1 ID=mRNA_H-paniculata_contig33537.8980.1|Name=mRNA_H-paniculata_contig33537.8980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=814bp|location=Sequence derived from alignment at H-paniculata_contig33537:805..1618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAATCAGGTCGAGGATTGCCTGGATCTTCTTGTTTCGTCCGGGCG TGTTCCCGAGGCTTGCTTTATGGCCAGGACCTATTTGCCTTCGGCCATGG GACGCCTGGTGGCTCTGTGGAAAAAAGATCTGGCCAAGGTCTCCACCAAG GTAACTATACCGTAACGCGCCCCTGGATCAGTCTAGAGCATGATTCAATG GGCAGAGGTGGACTGGCGGTCATAGATCATTATGTTCATCGTCGGTGATG CGTGGGCACATTTCGTGACTTGAGTGGACAAAGCCTTAATCCGTCATTAG TTGTTTTTTTCATGCGGAAGCCACCTTTGTTATTGTATTTTGTACACTGT TATCGTGTCTTCATTTGTTAATCCTTTGGGGGCTCATACCTAAAAAGGAT ATTTTCCGGGATAAGTTCTTCGGCCAATGTAAATGTACATTCGAAAACGT GTAATATGATACGGTGGATAACATGAACAAATGCGATTTTATGAGCGAGG GAATTATCATTCCTTCTGTCTGGAAAGCATTATTCGTTGATTCGTCAGTA TTTTGCTCTCTACCGAAAAGACCAACAGTGATTGATTTGCGCTTTGCTTG CCTTGCGTCCAGAATCCGAAGGGGTTATTAGTCCCGTTATTTGTTGTGTA CTGAATAACCCACTGATGCTTCCTTATACCCTCCCTCTACTGCAAAAGTG AGACATGAATATTCGATGAAACACGTCTGTGTCGTAATTTTACAGGCAGC GCAGGCGTTGGCGGACCCCGTGGAGTATCCCAACATGTTCGACGATCTGC CCTGGGCGTTGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33537:805..1618+

>mRNA_H-paniculata_contig33537.8980.1 ID=mRNA_H-paniculata_contig33537.8980.1|Name=mRNA_H-paniculata_contig33537.8980.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig33537:805..1618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAATCAGGTCGAGGATTGCCTGGATCTTCTTGTTTCGTCCGGGCG
TGTTCCCGAGGCTTGCTTTATGGCCAGGACCTATTTGCCTTCGGCCATGG
GACGCCTGGTGGCTCTGTGGAAAAAAGATCTGGCCAAGGTCTCCACCAAG
ATGGGGAATCAGGTCGAGGATTGCCTGGATCTTCTTGTTTCGTCCGGGCG
TGTTCCCGAGGCTTGCTTTATGGCCAGGACCTATTTGCCTTCGGCCATGG
GACGCCTGGTGGCTCTGTGGAAAAAAGATCTGGCCAAGGTCTCCACCAAG
GCAGCGCAGGCGTTGGCGGACCCCGTGGAGTATCCCAACATGTTCGACGA
TCTGCCCTGGGCGTTGAAGGCAGCGCAGGCGTTGGCGGACCCCGTGGAGT
ATCCCAACATGTTCGACGATCTGCCCTGGGCGTTGAAG
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