mRNA_H-paniculata_contig33506.8976.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33506.8976.1
Unique NamemRNA_H-paniculata_contig33506.8976.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33506.8976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33506contigH-paniculata_contig33506:17..2106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size226
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33506.8976.1prot_H-paniculata_contig33506.8976.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33506 475..2106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.081442-UTR-H-paniculata_contig33506:16..431622930035.081442-UTR-H-paniculata_contig33506:16..43Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33506 17..43 +
1691481119.705481-UTR-H-paniculata_contig33506:16..431691481119.705481-UTR-H-paniculata_contig33506:16..43Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33506 17..43 +
1622930035.0955732-UTR-H-paniculata_contig33506:422..4741622930035.0955732-UTR-H-paniculata_contig33506:422..474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33506 423..474 +
1691481119.7155387-UTR-H-paniculata_contig33506:422..4741691481119.7155387-UTR-H-paniculata_contig33506:422..474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33506 423..474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.1139348-CDS-H-paniculata_contig33506:474..5341622930035.1139348-CDS-H-paniculata_contig33506:474..534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33506 475..534 +
1691481119.7253113-CDS-H-paniculata_contig33506:474..5341691481119.7253113-CDS-H-paniculata_contig33506:474..534Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33506 475..534 +
1622930035.1318803-CDS-H-paniculata_contig33506:2019..21061622930035.1318803-CDS-H-paniculata_contig33506:2019..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33506 2020..2106 +
1691481119.7327547-CDS-H-paniculata_contig33506:2019..21061691481119.7327547-CDS-H-paniculata_contig33506:2019..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33506 2020..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33506.8976.1

>prot_H-paniculata_contig33506.8976.1 ID=prot_H-paniculata_contig33506.8976.1|Name=mRNA_H-paniculata_contig33506.8976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
MSGSAQQLCQHEIAALSHWLALGQFMVTKNAKALASTGSSRPVSKVAR*
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mRNA from alignment at H-paniculata_contig33506:17..2106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33506.8976.1 ID=mRNA_H-paniculata_contig33506.8976.1|Name=mRNA_H-paniculata_contig33506.8976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2090bp|location=Sequence derived from alignment at H-paniculata_contig33506:17..2106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGAATACAATGATCACATAGCGGAGGTCAGCACAGCACCTTTCCCACC
AAGACAACGATCAAAACCCTCTGCAGTAAGATAGTCTATGAGAGCGACAA
AGCAAGTATTCTAATGTATCCGTAACTCTTCCAGTGCGACTGCCGCAGGA
TCCCCACACAACGCGTAAATTAACACTGTTATCGAGAAAACGACTTAGGC
ATAAACTTGAAACCCTGTATAGAGGCTGAGAAATAGGGCCCCGCTGCAAG
TGCGATATTTAATCCCATAATCTTCCAGTTGGAGGATAAAAAATACGCTA
GATGGGTGTGTGCTACAGACGCCAATGCAGAGAATCAAGAGACAGAGAGT
TGTACTACTCTCAGCCATCATCTCACACTGTATCATGTACTGCTCTGCCT
ACACAGCAGGGAAGAAGACACGGTCGCACCTTCGTGCAACCCATCATACA
CAACTACCATGTCTGGTTCAGCACAGCAGCTGTGTCAACATGAAATTGCA
GCTCTCTCCCACTGGTTGGTGAGGAAGACCAAAAGCGAAGCAAATAGAAA
TCGCTTTATTACCACGACCTTGGGACTCGAGGGATCTTACGAATGGTCAA
TTGGTCATTTTTCATTCTCACCGATCCAGAGGAGCCCACAAAGATCCCTC
TCCCCCCCCCCCCAAGAGTAAAACTTGCTTTTACTCGCGATAATAATCAG
GCAGACGATGGGCTAAAGGATAAACTCTTCACGGTCCTTGAATCCAATGC
TTGCCTTAAATCACAAGGTCTCTGCTCGAGTAGGCGCTGTATATATGATT
GCCATGACCCTCTAGTCAGGACCGACGGAGAATCTTGACTCTTTCTCACC
CGCCAACATTAAATATCTCCATCCATTCACCACCGATTTAACACCACCAG
GCAAGCTGTAAATGTTGGCCGTAAGAAGTATTACATCTGGGTAAGTATGT
TGTCTTTCGTTAATGTCATTTTCCAGGATCAAAACGTGGTACATACATCA
TTTTCCAAACCCTGCTGTCTTGAAATACTGCAGAGTATGTAGATGGTAGT
CGTGATAATGACGGCAAGGAGAGCCAGCGTAGAGGCTGTCAGGGACACTG
CTTTGCGTCGCTTTCAATCGAACCCCGACTGATGAACATGTTTTAATCAA
CGTTGGTTGAAACATGAAATATCTCGCGTTATCCAGCATCAGTTATATAC
ACACGTTCTTCCGAACCACCATGGCTGTTCTTTGTTCTACTACAAGTATT
ACTTGAAGATCACAATCACAACCTGGTGGAATTTTTCGATCTGTGAAACG
CTCAATGTCATACATTTACACGTTATCTCGGTTGTGTTGGAAAATTCTCA
ACAGTATCCAACGGTTACGGTTAACCCATACTTGAACATTCGACCATGGT
GGTTACCCTATACTTGTAAACTTGCGTCCTTCGCAGTTTAACTCCCATTT
ATTGCAGGTATATACTTTCGGATTCATGAGTAATCTACTTCTTATATATA
TTCTTCCTGATCAGAACGCGACCTTGTTCTCCTCGGTGGAGGCTCGTGGA
TATGCTCGTTATCCGAGTTTGGACCTTAATTGCGATATATCGACCGTTGC
TATTGTGTATACTTCAACGTACCCCGTATCAAATTGTTTTAGATCAGCAC
TCAGCCATTGTATTTGCTGCTTCTCAGCATCACCTTCGCGCTTCGACTCC
ATTTGTTACTACCATATTCAGTGAGCGATATATATCACTCCTTTCGGTCA
TGTGCCAGGTATTTCCTGCAACTGACGATCAGACTTTACGTCGCATCGAG
GACACGACAGTAAATTTGGCAGCGATAGCGTTTAGCCACTGCAAGAATCC
AATAAGCCTTGCTACAGTGATTCACTACACTAATCAAACACCTGCCCCCC
CTCCTACATATCGTTTGCTTGTCGTGCTTTCGCGTGCGCGTGCGTGCGTG
CTTGCGTGCATGTGTGTGTGTTTGTGTATATATGCGCTTTCTTGTACCAA
CAGGCTCTCGGGCAGTTCATGGTGACAAAAAACGCGAAGGCATTGGCCTC
GACAGGGTCCTCCCGACCAGTGAGTAAAGTAGCACGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33506:17..2106+

>mRNA_H-paniculata_contig33506.8976.1 ID=mRNA_H-paniculata_contig33506.8976.1|Name=mRNA_H-paniculata_contig33506.8976.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig33506:17..2106+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGGTTCAGCACAGCAGCTGTGTCAACATGAAATTGCAGCTCTCTC
CCACTGGTTGATGTCTGGTTCAGCACAGCAGCTGTGTCAACATGAAATTG
CAGCTCTCTCCCACTGGTTGGCTCTCGGGCAGTTCATGGTGACAAAAAAC
GCGAAGGCATTGGCCTCGACAGGGTCCTCCCGACCAGTGAGTAAAGTAGC
ACGGTAAGCTCTCGGGCAGTTCATGGTGACAAAAAACGCGAAGGCATTGG
CCTCGACAGGGTCCTCCCGACCAGTGAGTAAAGTAGCACGGTAA
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