mRNA_H-paniculata_contig3350.8975.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3350.8975.1
Unique NamemRNA_H-paniculata_contig3350.8975.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3350.8975.1 vs. uniprot
Match: D7FZF2_ECTSI (Autophagy-related protein 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF2_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.490e-16
Identity = 62/117 (52.99%), Postives = 68/117 (58.12%), Query Frame = 2 
Query:   14 GLFGMSAAAPSFVQTSQLAPFLLSQMGPPQG-SWAGXXXXXXXXXVLSQFGRSTHGTTP--GPMMGQGQGHEQNFYWLERFYAAHRSHADLSSIVSDDAGLASRAAVGTS-AGLRRH 352
            G+FG S A PSFVQTSQLAPFLLSQ+G P G S+AG           S  GR+T    P  GP+     G EQNFYWLERFYAAHRS     S  S D G  + AA   S AGL  H
Sbjct:  759 GVFGASMATPSFVQTSQLAPFLLSQIGGPHGGSFAGGAG------APSFLGRTTSNGAPAAGPV-----GQEQNFYWLERFYAAHRSGGAGLSFASGDPGPRTAAATTASLAGLMSH 864
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3350.8975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZF2_ECTSI2.490e-1652.99Autophagy-related protein 9 n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3350contigH-paniculata_contig3350:12791..16623 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue5.7e-13
Seed eggNOG ortholog2880.D7FZF2
Preferred nameATG9A
KEGG koko:K02349,ko:K17907,ko:K19672
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04137,ko04138,ko04140,map04136,map04137,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000045,GO:0000139,GO:0000272,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000421,GO:0000422,GO:0001817,GO:0001818,GO:0001894,GO:0001932,GO:0001934,GO:0002165,GO:0002376,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0005977,GO:0005980,GO:0006073,GO:0006091,GO:0006112,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006897,GO:0006907,GO:0006909,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006979,GO:0006996,GO:0007005,GO:0007033,GO:0007154,GO:0007275,GO:0007552,GO:0007586,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0009056,GO:0009057,GO:0009251,GO:0009267,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009607,GO:0009617,GO:0009620,GO:0009628,GO:0009653,GO:0009791,GO:0009886,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010498,GO:0010562,GO:0010604,GO:0010623,GO:0010646,GO:0010647,GO:0010648,GO:0010669,GO:0012501,GO:0012505,GO:0012506,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016052,GO:0016192,GO:0016236,GO:0016237,GO:0019220,GO:0019222,GO:0019538,GO:0019941,GO:0019954,GO:0022411,GO:0022600,GO:0022607,GO:0023051,GO:0023056,GO:0023057,GO:0030054,GO:0030154,GO:0030163,GO:0030277,GO:0030587,GO:0030659,GO:0031090,GO:0031152,GO:0031153,GO:0031224,GO:0031288,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0031984,GO:0032006,GO:0032007,GO:0032258,GO:0032268,GO:0032270,GO:0032479,GO:0032480,GO:0032501,GO:0032502,GO:0032588,GO:0032648,GO:0032688,GO:0032872,GO:0032874,GO:0033036,GO:0033365,GO:0033554,GO:0034067,GO:0034497,GO:0034599,GO:0034613,GO:0034727,GO:0035069,GO:0035096,GO:0040011,GO:0042175,GO:0042221,GO:0042325,GO:0042327,GO:0042330,GO:0042331,GO:0042592,GO:0042594,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043408,GO:0043410,GO:0043632,GO:0043933,GO:0044042,GO:0044085,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044257,GO:0044260,GO:0044262,GO:0044264,GO:0044265,GO:0044267,GO:0044275,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044764,GO:0044804,GO:0044805,GO:0045087,GO:0045937,GO:0046328,GO:0046330,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048707,GO:0048856,GO:0048869,GO:0048871,GO:0050789,GO:0050794,GO:0050832,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051259,GO:0051260,GO:0051603,GO:0051641,GO:0051703,GO:0051704,GO:0051707,GO:0051716,GO:0055037,GO:0055114,GO:0060033,GO:0060249,GO:0060255,GO:0060729,GO:0061709,GO:0061723,GO:0061726,GO:0061912,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070302,GO:0070304,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071704,GO:0071840,GO:0072665,GO:0080090,GO:0080134,GO:0080135,GO:0090382,GO:0090702,GO:0097708,GO:0098542,GO:0098588,GO:0098630,GO:0098657,GO:0098743,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099120,GO:1901564,GO:1901565,GO:1901575,GO:1902531,GO:1902532,GO:1902533,GO:1903008,GO:1905037
EggNOG free text desc.process utilizing autophagic mechanism
EggNOG OGsKOG2173@1,KOG2173@2759
EC2.7.7.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03029,ko03036,ko03400,ko04131
Exons3
Model size614
Cds size588
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3350.8975.1prot_H-paniculata_contig3350.8975.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3350 12791..16598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.9795663-CDS-H-paniculata_contig3350:12790..131591622930034.9795663-CDS-H-paniculata_contig3350:12790..13159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3350 12791..13159 -
1691481119.6655176-CDS-H-paniculata_contig3350:12790..131591691481119.6655176-CDS-H-paniculata_contig3350:12790..13159Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3350 12791..13159 -
1622930035.0017588-CDS-H-paniculata_contig3350:14864..149951622930035.0017588-CDS-H-paniculata_contig3350:14864..14995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3350 14865..14995 -
1691481119.6781957-CDS-H-paniculata_contig3350:14864..149951691481119.6781957-CDS-H-paniculata_contig3350:14864..14995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3350 14865..14995 -
1622930035.0177107-CDS-H-paniculata_contig3350:16510..165981622930035.0177107-CDS-H-paniculata_contig3350:16510..16598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3350 16511..16598 -
1691481119.6867995-CDS-H-paniculata_contig3350:16510..165981691481119.6867995-CDS-H-paniculata_contig3350:16510..16598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3350 16511..16598 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.042397-UTR-H-paniculata_contig3350:16598..166231622930035.042397-UTR-H-paniculata_contig3350:16598..16623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3350 16599..16623 -
1691481119.6977315-UTR-H-paniculata_contig3350:16598..166231691481119.6977315-UTR-H-paniculata_contig3350:16598..16623Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3350 16599..16623 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3350.8975.1

>prot_H-paniculata_contig3350.8975.1 ID=prot_H-paniculata_contig3350.8975.1|Name=mRNA_H-paniculata_contig3350.8975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=196bp
MSAAAPSFVQTSQLAPFLLSQMGPPQGSWAGGGGGGGGGGVLSQFGRSTH
GTTPGPMMGQGQGHEQNFYWLERFYAAHRSHADLSSIVSDDAGLASRAAV
GTSAGLRRHNSTGFGGGGGGGGFRGPIGTGSAFAPHGANVGSRYVIGRGG
GRADADAGSDGGGGGGGLMSSASRGHDRTSGVVSTARTRDGGVRGS
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mRNA from alignment at H-paniculata_contig3350:12791..16623-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3350.8975.1 ID=mRNA_H-paniculata_contig3350.8975.1|Name=mRNA_H-paniculata_contig3350.8975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3833bp|location=Sequence derived from alignment at H-paniculata_contig3350:12791..16623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCGGCGACGGGTGGGCTATTTGGCATGTCCGCGGCGGCGCCGTCTTTCG
TGCAGACCTCTCAGCTCGCGCCGTTTTTGTTGTCGCAGATGGGACCTCCT
CAGGGCAGCTGGGGTGAGTTATTTTTTTCTTTATTCCAATATATTTATGC
TGTCATGTGTATACTACATATGTTTGTTTGTTTTGGGGGGGATTTAACAT
GACGGAAATCGAACTTGTGTAAACTTTCGGTGCTTTTTTGTTTCGTTTAT
TCTTTTTTTTTTTTCGTTGTAATTGACGAAAGCGTGAGAGAACCACCCCG
AGGAGGGCCTTTTTGTTGTGCAGTTTTTCGAGGGCTTTGGCATGTGCTCA
CTTTCTGCGTGTCATTGACCATTGGCAAGGAGTCGGTGCCTGCTGCACGC
GTGTCCCGTACTTGACAATAGGCAGAGGGACATCGAGTAGAGCTTGGTGG
CAATTCTTACGGTTTTGGTCGTCGTTTTTGCGATTTTTTACGATGGTGGG
GGAGATACATTTAAATATTTGTAAATTGTCAACAGCTTCAAACTAAAAAA
CAAAGTCTTTGGGGGCATTGTGTGTGTATTTTCTTGTGGGATTTATGTTT
TATGTTTTATGTTTTGTGTTTTTTTTCAATGGTGTTTTGTTGAGGCTGCA
CGACAAAGACGGACAGAATGACAGTTGATTAACTATCGACTCTGAGATGA
GTGGCGTCGTTTGCATTCCTTCTGGGCCCTCTTGTCTTCAGCATCTAGCC
AGCAGGATGGATTTGAATCCGCGATGTTCGTGTGTGTATGGACCTCACCC
AAGTTATTGCCCCATTTTGACGAGACGAGCCTGTTATCTACCTTTACAGG
CAATGCCCATTGTCTGTGTTTCCCGCCACATTTGTTTCGGGAAGCCGCCC
GTCAAACATGCAGTGACAACTATGAACTCTCTTACCCTCCCCTTGCCTTC
CCCAGTCATTGGTCTCGAACAACATGAGTACCTCCCATCCGGGATAGATG
CAGTTTCAAAACGAGAATGATGGCATATTTTTATTACAGATATCGACCGT
TGTTGCACTAGCCGCTGTTGTGGGCAAAAGTCATGCTCGCTTTTACTATT
CAAGTAGTTTCATTTCTGTGTTGCCACGTGTTATTTACTGATGGATTACT
TACTGTCTGTAACAGAACTGCCTGAATGGACTGCGGCGCTCACAGGCAGT
AATAATAATAATGATAATGATAACAAAAACAATATCATAACACATGCGTC
GTGTTTTCCTCTTGTCTGTGAGGTGATGGTACAGGAATTAAGTGGGGATA
TAGATGGGATCCGAGGGGTAACAGACGAGTTAATAGACGGGGTATTAAAG
AAAGTGAACAGGCGGGGGCGGAAGGGCGGGCTATATTGGTCTCCTGCACG
CATTCATCCGCTCAACGCAGAGCGATCGTAACAAGTGACAAATGAGCGAG
GGGTTCTGGCTGGGCCTGTCTGTTTTCGTATAGACCGTTCTCTGTTCCCG
GACTGGTCTCTGTTTTCCTGTAGATTTCTCCTCTGTTTCTGGACTCAGCC
TCTTATGCTCACGCGCCGTTGTCGTCGATATTGCATCTGTTCCCCCGGAC
CGTTTTCTGGTTGATTCTTGTTGCGCAGCGGGAGGAGGTGGGGGAGGTGG
GGGAGGAGGAGTTCTTTCGCAGTTCGGGCGGTCGACACACGGCACCACCC
CGGGTCCCATGATGGGGCAGGGGCAGGGCCATGAGCAGAATTTCTACTGG
CTGGAGAGGGTACGTTTGTTTGTGCGGTTTTGTGCTTTTGCCGTCGTCGT
GAAGTCGCGTATTGCGCTTTTGAATGTGGTGATGAATGATGAGGATGATG
GTGGTGGTGGTGGTGAGAGATTGAGCTACCTACGCTTTTGGCTTGCCTAC
AGGTAGCAGGGGGGTCTGAACCACTGGCCCACTGGCCCATTGGCCTACTA
CTAGTCTTGGCTTGTTTTTATGCTGGTCGTTCCGACGATCACCTCCATTT
TTTATGCGTATGGTAAACGTACTTCCTCTGCCCCGTAAGTCTGGTCACTT
GTAGTGTTTTTGTAGTCATGACGTTCAATCCTGAGATCCATCAACAGCCA
AGTAAGCATACCGTTGGTAACCTCACAACTACCGCTGAACACAGAACACA
GAAACACATTGATATTTCGACAGATATTTTTTCTAATTCGAATTAGATCT
GGAAGTTGAATGCGTTCGTTTTTTATTGTGAGTTCAAAAATATCAGAATG
TGAGAAATCATTTTTAAAAATCGTTCTGTTTTTTTTTTGTTTTTGTTTTT
TTGCGAAACTTGAGCTTCATCAAAATCTAAGGCTGCCTTTCGAAAGTCGA
CATTTTCGGCTTTCACGTCGATACCTTCTGAATGATAATTTTTCAATTCG
AAATGATTCAATGTCCTGCCTCTCGTCTCAATATATTATTTCGTGCTTGT
TTCGGAAATGGAAGATTTTGCCAAGCAGTAAAAATCGGCCCAAACTTCCC
AAGCCTTTTCTCATGACCTTTGTTTATATAAATATATATATTTTTCAATT
ATTATCAGTTTTTTCTCCCAGGACTATCCGTCTACCGGCCGGCAAACCAA
AAATTCTCACATGGCGATCCGCGATTCTGTTAAAGGAAATATAGACATGT
TTGGGCGAATGCCTGGATGTGGAAGTAGCGGAAAAGGTTTTTACCTCAGC
CTTCCGGGGGTTAAAAAAGAAAAAAATGGCGATCCGGGAACCGTGCAAAA
ATACATCATGACCAACCACGAACCGGTTCATGGCATGGCGAAATACGTGT
GATGGTCCGGTCATATGGAAAAAGTTATGTATTTTTCAATCAAAAGTTTT
GCATATTTTGGATTCATCAAAATGTAGAAGTTGAGGTGATTGGCTTTCGA
ACGGTATGCTTGGATTTTCGTCAATCTCATTTTTTTTGGAAAACTTATTG
AAAGTTCGGGCCAATTTTGCCGTTTTTACACATTCTTCCATTTTCGAAAA
TGAACAGACACAAGTGTGTATTCAGAGTACAGTTTCTGACCCATTCAATC
AAATCGAAGTAGAAAAATGTTTTAGATATCGATATCACAAGCCGAATTTG
TGGGCTTTACCAAATAGTATGCTTTTGCTTGGCTTTTTATGAAAAGGAAA
ATTGCGAAAGTTATCACTGTAAGTCAAACGAATTAAGTGACCAGACTGGT
GGGATGCATCGATGACTTTCCAGCTATAACGGTAACAGGGACACACTATT
TGCGCGCCAGCGTTTCCTAATGGCGCAGTTAGGAGTGTTACTCCGTCTTT
TATTTTACTGAAGAGATGGCAACAAATATAGATAGGGCCAGCAGAGTCGC
CGTTTCAGACTCATGAGATATACATGACTTTCTAACAGCGTTTCGATACC
TGCTGGTTGATCTCGATGCCCCCCCCCCCGTCAACACTCGCCCACCCGCT
CCCGACCCCACCAGTTCTACGCGGCACATCGAAGCCATGCAGATCTCTCC
TCCATTGTCTCCGATGACGCTGGCTTAGCCTCGAGAGCGGCCGTCGGCAC
TTCCGCTGGGTTGCGTCGCCACAACAGCACCGGCTTCGGTGGCGGTGGCG
GTGGTGGCGGTTTTCGTGGTCCAATAGGCACCGGTAGTGCCTTTGCCCCG
CACGGAGCTAACGTTGGGTCGAGGTATGTGATAGGGCGCGGCGGCGGCAG
GGCTGACGCTGATGCGGGGTCAGATGGTGGCGGCGGCGGAGGCGGGTTGA
TGTCGTCCGCTTCTCGTGGTCATGACCGCACTTCCGGTGTAGTTTCGACG
GCGCGGACTCGAGACGGTGGGGTGAGGGGAAGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3350:12791..16623-

>mRNA_H-paniculata_contig3350.8975.1 ID=mRNA_H-paniculata_contig3350.8975.1|Name=mRNA_H-paniculata_contig3350.8975.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1176bp|location=Sequence derived from alignment at H-paniculata_contig3350:12791..16623- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCGCGGCGGCGCCGTCTTTCGTGCAGACCTCTCAGCTCGCGCCGTT
TTTGTTGTCGCAGATGGGACCTCCTCAGGGCAGCTGGGATGTCCGCGGCG
GCGCCGTCTTTCGTGCAGACCTCTCAGCTCGCGCCGTTTTTGTTGTCGCA
GATGGGACCTCCTCAGGGCAGCTGGGCGGGAGGAGGTGGGGGAGGTGGGG
GAGGAGGAGTTCTTTCGCAGTTCGGGCGGTCGACACACGGCACCACCCCG
GGTCCCATGATGGGGCAGGGGCAGGGCCATGAGCAGAATTTCTACTGGCT
GGAGAGGCGGGAGGAGGTGGGGGAGGTGGGGGAGGAGGAGTTCTTTCGCA
GTTCGGGCGGTCGACACACGGCACCACCCCGGGTCCCATGATGGGGCAGG
GGCAGGGCCATGAGCAGAATTTCTACTGGCTGGAGAGGTTCTACGCGGCA
CATCGAAGCCATGCAGATCTCTCCTCCATTGTCTCCGATGACGCTGGCTT
AGCCTCGAGAGCGGCCGTCGGCACTTCCGCTGGGTTGCGTCGCCACAACA
GCACCGGCTTCGGTGGCGGTGGCGGTGGTGGCGGTTTTCGTGGTCCAATA
GGCACCGGTAGTGCCTTTGCCCCGCACGGAGCTAACGTTGGGTCGAGGTA
TGTGATAGGGCGCGGCGGCGGCAGGGCTGACGCTGATGCGGGGTCAGATG
GTGGCGGCGGCGGAGGCGGGTTGATGTCGTCCGCTTCTCGTGGTCATGAC
CGCACTTCCGGTGTAGTTTCGACGGCGCGGACTCGAGACGGTGGGGTGAG
GGGAAGCTTCTACGCGGCACATCGAAGCCATGCAGATCTCTCCTCCATTG
TCTCCGATGACGCTGGCTTAGCCTCGAGAGCGGCCGTCGGCACTTCCGCT
GGGTTGCGTCGCCACAACAGCACCGGCTTCGGTGGCGGTGGCGGTGGTGG
CGGTTTTCGTGGTCCAATAGGCACCGGTAGTGCCTTTGCCCCGCACGGAG
CTAACGTTGGGTCGAGGTATGTGATAGGGCGCGGCGGCGGCAGGGCTGAC
GCTGATGCGGGGTCAGATGGTGGCGGCGGCGGAGGCGGGTTGATGTCGTC
CGCTTCTCGTGGTCATGACCGCACTTCCGGTGTAGTTTCGACGGCGCGGA
CTCGAGACGGTGGGGTGAGGGGAAGC
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