mRNA_H-paniculata_contig335.8972.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig335.8972.1
Unique NamemRNA_H-paniculata_contig335.8972.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig335.8972.1 vs. uniprot
Match: D8LT90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT90_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 1.290e-23
Identity = 44/62 (70.97%), Postives = 52/62 (83.87%), Query Frame = 2 
Query:  245 MGLLAWVQRHYYHYSISTGTYSFYPAERVMVNAFTMTLFCLIAYYIVRGVWFGVLCVGELVS 430
            MGL++WV+RHYYHY+ISTGTYSFYP ERV+VNAFT TLF L AYY  R  WFG L +G+L+S
Sbjct:    1 MGLVSWVKRHYYHYTISTGTYSFYPVERVLVNAFTFTLFSLTAYYAARSAWFGALFIGDLIS 62
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig335.8972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT90_ECTSI1.290e-2370.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig335contigH-paniculata_contig335:10300..11246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size947
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig335.8972.1prot_H-paniculata_contig335.8972.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig335 10544..10747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.5606678-UTR-H-paniculata_contig335:10299..105431622930034.5606678-UTR-H-paniculata_contig335:10299..10543Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig335 10300..10543 +
1691481119.450916-UTR-H-paniculata_contig335:10299..105431691481119.450916-UTR-H-paniculata_contig335:10299..10543Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig335 10300..10543 +
1622930034.5823317-UTR-H-paniculata_contig335:10747..112461622930034.5823317-UTR-H-paniculata_contig335:10747..11246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig335 10748..11246 +
1691481119.4740057-UTR-H-paniculata_contig335:10747..112461691481119.4740057-UTR-H-paniculata_contig335:10747..11246Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig335 10748..11246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.5717735-CDS-H-paniculata_contig335:10543..107471622930034.5717735-CDS-H-paniculata_contig335:10543..10747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig335 10544..10747 +
1691481119.4632888-CDS-H-paniculata_contig335:10543..107471691481119.4632888-CDS-H-paniculata_contig335:10543..10747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig335 10544..10747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig335.8972.1

>prot_H-paniculata_contig335.8972.1 ID=prot_H-paniculata_contig335.8972.1|Name=mRNA_H-paniculata_contig335.8972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MGLLAWVQRHYYHYSISTGTYSFYPAERVMVNAFTMTLFCLIAYYIVRGV
WFGVLCVGELVSQAKVA*
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mRNA from alignment at H-paniculata_contig335:10300..11246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig335.8972.1 ID=mRNA_H-paniculata_contig335.8972.1|Name=mRNA_H-paniculata_contig335.8972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=947bp|location=Sequence derived from alignment at H-paniculata_contig335:10300..11246+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCAACGACGGTGGTGGCGGCAAGGTGCGACAGGAGTGTGGGCTGTGCTCG
AGACCCGTGCTAGTGTGGGTGTTCGGGAATGGAAAATCAAGCCCGTGTTG
CTGGGGCAGCTTGAAGAGAGCGAGTCTCGCGCTTGGTTTTTGATACGGGG
GCGGAGGGAACGGTGTTGCAAGAACACTTCGTGAGTGAAGATTGGAGCTC
TTGGGTGCGGAGACGGGAGGCGAGGACGGGAGGAGGTAGAAAGGATGGGT
CTTTTAGCGTGGGTTCAGAGACATTACTATCATTATTCCATTAGCACAGG
AACGTATTCGTTCTACCCAGCAGAGCGGGTGATGGTTAACGCGTTCACCA
TGACTCTGTTCTGCTTGATTGCATACTACATCGTCCGTGGGGTGTGGTTT
GGTGTCTTGTGTGTTGGCGAGTTGGTAAGTCAAGCGAAGGTGGCGTAACA
GCCGTATGTTTGTATAGGCTACTTGGGAACTGCTTTTCGAAAATGTTGTT
CGTGTGTGCGTGTTTTAGTGTGTGTATGTGTATTTATGTTGTCGGTTTCT
CATAGCACCATATAAAAGTCACGGTGCGGCAGGGTGTGGCGGGTAGCGGC
CATGTTCAACTTGTGAGAGGAAAGGATATTACTTTATTGTGGCTTTGTAA
ATTGCGGTACAGCAGGAAAATATGTAGACAATTCTGTGATGTGGTTCTGA
GTGGTCGAGTAAAACTTCGTCCTGCATGTTAATTGAACGATGTGAAGTGA
TGAACCGACTCTTCTCTTGCTTGCCGAATCTCCACTCTCTCTTAGTTGGT
GAATGCTAGGTGCGTCGCACAAAAATTGTAGTCTTTTCTCGCCCCAGGCT
GAATGAATCGAATCACGCCAAGTGGTGACCGCAATCACCAGCGCCCGCCC
TTGTCCTTGCTGCTTGGTTTGACAAGGATGCCTTGCATATCAAGCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig335:10300..11246+

>mRNA_H-paniculata_contig335.8972.1 ID=mRNA_H-paniculata_contig335.8972.1|Name=mRNA_H-paniculata_contig335.8972.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig335:10300..11246+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCTTTTAGCGTGGGTTCAGAGACATTACTATCATTATTCCATTAG
CACAGGAACGTATTCGTTCTACCCAGCAGAGCGGGTGATGGTTAACGCGT
TCACCATGACTCTGTTCTGCTTGATTGCATACTACATCGTCCGTGGGGTG
TGGTTTGGTGTCTTGTGTGTTGGCGAGTTGGTAAGTCAAGCGAAGGTGGC
GTAAATGGGTCTTTTAGCGTGGGTTCAGAGACATTACTATCATTATTCCA
TTAGCACAGGAACGTATTCGTTCTACCCAGCAGAGCGGGTGATGGTTAAC
GCGTTCACCATGACTCTGTTCTGCTTGATTGCATACTACATCGTCCGTGG
GGTGTGGTTTGGTGTCTTGTGTGTTGGCGAGTTGGTAAGTCAAGCGAAGG
TGGCGTAA
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