mRNA_H-paniculata_contig33470.8965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A6H5JWI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI3_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 1.180e-20 Identity = 52/125 (41.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGGTNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTEEQVRARGFLERKWYYFCA-LLVKAFPLTTTR 372
RTS+ES +L+C+ E+ACIGGT+ YC+ GYRG YCAVC E YA G +SC C + R A+G +V + V ++G+ + DLVRV + G K C +VKA PLT+ +
Sbjct: 621 RTSAESQNVLKCYQEEACIGGTDVSQYCQEGYRGAYCAVCDEGYASGYQFSCSICDGENLRSAIGTSVALFFVALVGIALVIADLVRVVDEVEPDTASTWG----KRLTSCRDRIVKAVPLTSIK 741
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D7FUB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUB6_ECTSI) HSP 1 Score: 85.9 bits (211), Expect = 5.710e-17 Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGGTNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVG 195
RTS+ES +ILECH E+AC+GG+ YC TGY+G YCA C E YA G+ YSC+ C + A+G
Sbjct: 398 RTSAESDIILECHREEACVGGSTAGEYCATGYQGAYCAACEEGYASGLQYSCKSCGGDNATSAIG 462
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI) HSP 1 Score: 68.2 bits (165), Expect = 1.030e-10 Identity = 40/95 (42.11%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGG------TNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVL---VVILGVTTFVLDLV 258
R++ S I EC N+DACIG ++ +YC TGY GPYCAVC + Y GV ++C C + WA G+ VV+ L V+++GV + DLV
Sbjct: 468 RSTETSTNIRECFNDDACIGSEVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDGS--YWA-GMVVVMALTGVVLVVGVVIVLNDLV 559
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A6H5JCK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK8_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 4.470e-9 Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGGTN---TENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAV 192
R+ ES +L C + ++C G T+ +++YC +GY GPYCA C Y G+ +C C FRW +
Sbjct: 415 RSGKESATVLACIHAESCAGATHVSTSDDYCSSGYEGPYCASCQAGYGTGIGNTCHSCDGTRFRWLI 481
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D7G1E0_ECTSI (EsV-1-12 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1E0_ECTSI) HSP 1 Score: 62.4 bits (150), Expect = 1.140e-8 Identity = 37/95 (38.95%), Postives = 53/95 (55.79%), Query Frame = 1
Query: 34 CHNEDACIGG-TNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTEEQVRARGFLER 315
CH + GG T +N+C +GY+GPYCAVC DY+P + ++C CS++ R GLTV+ + VI VT F + + STE + G R
Sbjct: 876 CHFKGNSAGGKTGADNFCASGYQGPYCAVCKTDYSPSLAHTCTHCSSSRRR---GLTVIAAIAVI--VTVFAIVAIFQYMLSTEHEDGILGCFRR 965
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A836CD27_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD27_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 2.100e-8 Identity = 29/71 (40.85%), Postives = 43/71 (60.56%), Query Frame = 1
Query: 22 VILECHNEDACIGG---------TNTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVV 207
++ +C N+ AC G T+T+ YC GYRGPYCAVCA+ Y Y+C++CS+ + A+ LTV+
Sbjct: 574 IVRKCWNKGACAGAPSAAAAVDVTSTDAYCAPGYRGPYCAVCADGYTNFFRYTCKECSSGA---AIALTVI 641
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A835ZLE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLE8_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.880e-8 Identity = 34/97 (35.05%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGGT---NTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFVLDLVRVEHGSTE 282
R + V+ +C N AC GG + + YC GY+GPYCAVC+++Y V Y C +C+ AV + V++ VV + + LVR G++E
Sbjct: 569 RETLTQEVVRQCWNSAACSGGAAAASVDEYCAAGYKGPYCAVCSDNYGALVGYRCVECT----NTAVAIAFVVMAVVAVTAVFLLWVLVRAVGGASE 661
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: D7FRG6_ECTSI (Polymorphic membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG6_ECTSI) HSP 1 Score: 60.1 bits (144), Expect = 7.360e-8 Identity = 25/67 (37.31%), Postives = 35/67 (52.24%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGGTNT---ENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAV 192
R+ ES +L C + ++C G T E+YC +GY GPYCA C Y G+ +C C RW +
Sbjct: 864 RSGKESSTVLACIHAESCAGATQVSTAEDYCSSGYEGPYCASCQAGYGTGIGNTCHPCDDTRSRWLI 930
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A835YZD4_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZD4_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.340e-7 Identity = 31/70 (44.29%), Postives = 39/70 (55.71%), Query Frame = 1
Query: 1 RTSSESHVILECHNEDACIGG----------TNTEN-YCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAAS 177
R S E V+ +C E AC GG N N YC+ GY GPYCAVCA+ + LY C++CSA+S
Sbjct: 653 RGSEEYVVVHKCLRESACEGGRVYVAAGADSANAANGYCKDGYSGPYCAVCADGFVSTGLYECQQCSASS 722
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Match: A0A835Z2L6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2L6_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 1.810e-7 Identity = 35/94 (37.23%), Postives = 45/94 (47.87%), Query Frame = 1
Query: 22 VILECHNEDACIGGT-------------------NTENYCRTGYRGPYCAVCAEDYAPGVLYSCRKCSAASFRWAVGLTVVIVLVVILGVTTFV 246
+I C N AC+GGT +++ YC GYRGPYCAVCA+ YA Y C +C+A V VV+ VV LG+ V
Sbjct: 514 IIRACPNRQACVGGTGATSIGVWTQEAGVWSLGWSSDAYCAAGYRGPYCAVCADGYAAVTGYKCVECTAGIVGAVVVGMVVLFAVVALGLWVLV 607 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33470.8965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33470.8965.1 >prot_H-paniculata_contig33470.8965.1 ID=prot_H-paniculata_contig33470.8965.1|Name=mRNA_H-paniculata_contig33470.8965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp RTSSESHVILECHNEDACIGGTNTENYCRTGYRGPYCAVCAEDYAPGVLYback to top mRNA from alignment at H-paniculata_contig33470:1283..1992+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33470.8965.1 ID=mRNA_H-paniculata_contig33470.8965.1|Name=mRNA_H-paniculata_contig33470.8965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=710bp|location=Sequence derived from alignment at H-paniculata_contig33470:1283..1992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33470:1283..1992+ >mRNA_H-paniculata_contig33470.8965.1 ID=mRNA_H-paniculata_contig33470.8965.1|Name=mRNA_H-paniculata_contig33470.8965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig33470:1283..1992+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |