mRNA_H-paniculata_contig3345.8961.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig3345.8961.1 vs. uniprot
Match: D7G201_ECTSI (Sel1 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G201_ECTSI) HSP 1 Score: 771 bits (1991), Expect = 7.960e-264 Identity = 514/870 (59.08%), Postives = 624/870 (71.72%), Query Frame = 1
Query: 1 GQNVPSTTSAALNRFKGMNLRSGSTGRAVTPRLVSMVTGATTSHKEGSSSNNDGHIMTGRRSPQTSAPERNSGSGDEMVPPPLLLEVPVCAEAEESLTESTAPQEKLMAAIFDDSNEENSNVEDGDSERGENQGALDQEDQEYAASPRSNWAATLMASTMARAKSTGKLTAIGSSAHMLPHPQDFKAKVDYLIVVCKAAETYASSQTAKLIKVRDGQHMISQLQDVAMDLGRQRDKILAVYDTREVQRSTDRLGQTLKEVYELIGDIEGTGVMFGKKKAFGKRVNALVHDIGTNANALLAATSLAIADRSTVLYKNDMDAGEPPAPQQEELAKKCIEGDKFFFGRGDKLSHSKAYEAYSWAAERGFAEAMYMIAWMYRAGT-HVEADAEQCQLWLERAVDEGYAPAINDLAVILLAEADQLEEAYPEIKTDAIDLALLGSGGSGGSNDEEGCTGV---DENGRGDTNRLFDEHKERMSWSEKTKEEKSGVHANLDEDIEME----SIPPEQANILDQVVGRRKRAMQLLQEAAKMGHTEAMTNLGNMNEAMGYLEEARTWYSLAADPSESANNARAQNYLGTLFYEGRGVAKDLQEAVKWFRRSARQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAYMLARDALHTLATAARQAPSGVR-------ACGKGLKFEDPSKGLMQMGKASTKSSSEAWRKTTAQLREAADLFRRAADNGVMDASYQLGRLYQQGLGIPVDPVAAFENFLVAAEGRVVHPTAATCVGDMLYTGIGCLQNYAEAMRFYFRAANAGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERGDPLSAFVNAAG 2565
G + S TSAAL R KGM LRSG++GR + PR V++V+G + + +NDG T + G + P + + ++ T ++ ++ +FDD E SN E+G +E G + + D AA+PRS WAATLMAST+AR K+TGK + + +LPHP++ K++YL++VCKAA+ YAS+Q A+L +VRDGQHMI+QL+DVA DLGRQ +K+LAVYDTREV+ S DRLG+TLK VY+L+GD+EGT +MFG+K+ FGKRV ALVHDIGT ANALLAATSLAIADR VLY D GEPPAPQQ+EL K CIEGDKFFFGRG+ + SKA+EAY+WAAERG AEAMYM+AWMYR G+ V+ADAEQCQ WLERAVD+GYAPA+NDLA LL +AD+ E A+PE+K D ++ + ++ G T D++ G + + +E E S+PPE A + +QV+ +RKR+MQLLQ+AAK GHTEAMTNLGNM EAMGY E+AR+WYSLAA PSESANN RAQNYLGTLFYEGRGV KD EAVKWFR SARQG XXXXXXXXXXXXXXXXXXXXXXXXXXXX LAY+LARDALH LA AARQAP G+ G GL+FEDPS+G+M+ S+++SS+AWR++TAQLREAADLFRRAAD+G+ DASYQLGRLYQQGLGIP++PVA+FENFL AA+G VVHPTAA CVGDMLYTG GCL++Y A+R+Y RAA+AGE XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERGDPLSA +AAG
Sbjct: 76 GSRLLSATSAALTRVKGMTLRSGTSGRVLNPRSVTLVSGLLSPSRGKKGVDNDGADRTSEEDRSRKDRPFSQGHVENDKSAPWVQD-----PGQDDDGGGTKSNKQKLSVLFDD---EESNAENG-TEEGASIPSTSTNDSN-AATPRSKWAATLMASTLAREKATGKAM-VRNRVDLLPHPREAANKIEYLVMVCKAAQAYASTQAARLSRVRDGQHMINQLRDVASDLGRQAEKMLAVYDTREVRNSADRLGETLKGVYDLLGDVEGTAIMFGRKRGFGKRVTALVHDIGTRANALLAATSLAIADRPNVLYMADTGGGEPPAPQQQELLKMCIEGDKFFFGRGENPNMSKAFEAYAWAAERGCAEAMYMMAWMYRVGSGSVDADAEQCQRWLERAVDKGYAPAMNDLATTLLEQADRTERAHPELKADVAAADVIADSPTDDADRGLGATRPPTPDDHTSGGSEEXXXXXXXXXXXXXXXXXXXXXXXXDGGRQVEAEEDASSLPPELAQLFEQVMEKRKRSMQLLQDAAKTGHTEAMTNLGNMQEAMGYFEDARSWYSLAAHPSESANNPRAQNYLGTLFYEGRGVTKDRDEAVKWFRLSARQGFPQACXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGSISATNSLAYLLARDALHALAAAARQAPPGLDQRNLSAGVAGTGLQFEDPSRGIMKPAGLSSQASSKAWRESTAQLREAADLFRRAADSGIGDASYQLGRLYQQGLGIPLEPVASFENFLAAADGEVVHPTAAACVGDMLYTGTGCLRDYGAALRYYVRAAHAGEATSANAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLERGDPLSAIASAAG 934
BLAST of mRNA_H-paniculata_contig3345.8961.1 vs. uniprot
Match: A0A836CC33_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC33_9STRA) HSP 1 Score: 402 bits (1032), Expect = 1.130e-117 Identity = 269/692 (38.87%), Postives = 352/692 (50.87%), Query Frame = 1
Query: 442 RSNWAATLMASTMARA-------KSTGKLTAIGSSAHMLPHPQDFKAKVDYLIVVCKAAETYASSQTAKLIKVRDGQHMISQLQDVAMDLGRQRDKILAVYDTREVQRSTDRLGQTLKEVYELIGDIEGTGVMFGKKKAFGKRVNALVHDIGTNANALLAATSLAIADRSTVLYKNDMDAGEPPAPQQEELAKKCIEGDKFFFGRGDKLSHSKAYEAYSWAAERGFAEAMYMIAWMYRAGTHVEADAEQCQLWLERAVDEGYAPAINDLAVILLAEADQLEEAYPEIKTDAIDLALLGSGGSGGSNDEEGCTGVDENGRGDTNRLFDEHKERMSWSEKTKEEKSGVHANLDEDIE--MESIPPEQANILDQVVGRRKRAMQLLQE-------------------------AAKMGHTEAMTNLGNMNEAMGYLEEARTWYSLAADPSES-ANNARAQNYLGTLFYEGRGVAKDLQEAVKWFRRSARQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------LAYMLARDALHTLATAARQAP-----SGVRACGKG-LKFEDPSKGLMQMGKAS---------------------TKSSSEAWRKTTAQLREAADLFRRAADNGVMDASYQLGRLYQQGLGIPVDPVAAF 2235
RS WA TL+ ST + A +P +D KVD+L+ VCK+ E YA AKL VR G +I L+D DL RQRDKILAVYDT EV+RS DRLG TL V+E++ D+E MFG+KK FGKRV ALV ++GTNAN+LLAATSLAIADR +LY D D G PP + EEL ++C+EGD++++GR + KA+ AY WAAERGF EA YM+AWMY+ G V ADAE+C WLERAV+ GYAPA+N+LA++LL EA+ + A+PE++ +LA + D G ++ + A L ++ PE A RKRA LLQ AA++GH +AM +LG++ E G + AR WY LAA P + ANNARAQN+LG +++ GRG A+D +EA +WF+R+A+QG LAY+LAR+ALH L A Q G G+G ++FEDP +G M+ +AS T S+++ R+ T QL EAA+LFRRAAD G DASYQLGRLY+QGLG+PVDP+AAF
Sbjct: 288 RSRWAQTLLLSTTSSAFKGXXXXXXXXXXXXXXXXXATMPREEDVGNKVDFLVAVCKSTEVYAKQLEAKLGTVRSGVALIEGLRDTHADLKRQRDKILAVYDTLEVRRSADRLGTTLTHVFEVLSDVERAARMFGRKKGFGKRVQALVQELGTNANSLLAATSLAIADRPQMLYMVDADDGAPPKHKLEELIQRCLEGDRWYYGREGPPNFEKAHAAYLWAAERGFGEAQYMLAWMYKHGHFVTADAERCTHWLERAVERGYAPAMNELALLLLEEAEGISAAWPEVQAAFDELASKAADA-----DAAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXARDVRGSAAAALGATQRRLQRTLSPEAAAKFAAAAELRKRAQSLLQRVRLCVRREVRCVRQLCAAAVPAAVSAARLGHADAMASLGSLLEEAGRVRAARRWYELAAAPGDGGANNARAQNFLGRMYHSGRGAARDPREAARWFKRAAKQGLAAACNNLGLCYEAGAGVQKVGAGKRKVCRRFADTSPFCMDAATGAARASAHDTSKAIELYRQGVEGGSASACGNLAYLLAREALHALGCLAGQGTPLRGDGGALQWGRGGMQFEDPQRGAMESPEASAAASQCTLARCVSPLDVPLETTMSAADVRREMTRQLLEAAELFRRAADAGSADASYQLGRLYEQGLGMPVDPMAAF 974
BLAST of mRNA_H-paniculata_contig3345.8961.1 vs. uniprot
Match: UPI0018CCA9D7 (SEL1-like repeat protein n=2 Tax=Psychrobacter TaxID=497 RepID=UPI0018CCA9D7) HSP 1 Score: 57.4 bits (137), Expect = 9.550e-5 Identity = 38/125 (30.40%), Postives = 56/125 (44.80%), Query Frame = 1
Query: 1450 SGVHANLDEDIEMESIPPEQANILDQVVGRRKRAMQLLQEAAKMGHTEAMTNL--------GNMNEAMGYLEEARTWYSLAADPSESANNARAQNYLGTLFYEGRGVAKDLQEAVKWFRRSARQG 1800
S V ++ I + P Q + + +KRA+ LQE A+ G+T AM L G + E W AA S N++RAQ L +FY+G GVA+D+ W ++A G
Sbjct: 346 SNVLEQFEQHIAKQKKPRAQIVFSESHLAAKKRALLKLQEVARAGNTAAMLRLAIYELLDEGIAADKSAATESGTAWVKQAA----SKNDSRAQRLLSKMFYQGLGVAQDIDNGKYWLEQAAENG 466 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3345.8961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3345.8961.1 >prot_H-paniculata_contig3345.8961.1 ID=prot_H-paniculata_contig3345.8961.1|Name=mRNA_H-paniculata_contig3345.8961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=855bp GQNVPSTTSAALNRFKGMNLRSGSTGRAVTPRLVSMVTGATTSHKEGSSSback to top mRNA from alignment at H-paniculata_contig3345:8011..15891+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3345.8961.1 ID=mRNA_H-paniculata_contig3345.8961.1|Name=mRNA_H-paniculata_contig3345.8961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7881bp|location=Sequence derived from alignment at H-paniculata_contig3345:8011..15891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3345:8011..15891+ >mRNA_H-paniculata_contig3345.8961.1 ID=mRNA_H-paniculata_contig3345.8961.1|Name=mRNA_H-paniculata_contig3345.8961.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=5130bp|location=Sequence derived from alignment at H-paniculata_contig3345:8011..15891+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |