mRNA_H-paniculata_contig3345.8960.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3345.8960.1
Unique NamemRNA_H-paniculata_contig3345.8960.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: D8LJN2_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN2_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 1.930e-98
Identity = 145/187 (77.54%), Postives = 162/187 (86.63%), Query Frame = 2 
Query:  158 MNFALRASMARRVVSRAFTTA-KNPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEIE 715
            M   LR+S+ RR   RAF+TA KNPSV+FD+NIGG   GR+ MEL A++VPKTAENFRQLC GE GFGYKGS FHRIIP FMCQGGDFT GNGTGGKSIYG+KF+DENF+L HTGPG+LSMANAGP TNGSQFFICT KTDFLDGKHVVFG VT+GMDV+ +MEAVGSSP+GTTSK V IEDCGE+E
Sbjct:    1 MFATLRSSVGRRSAMRAFSTAAKNPSVFFDINIGGAAAGRVVMELRADVVPKTAENFRQLCTGEKGFGYKGSSFHRIIPQFMCQGGDFTNGNGTGGKSIYGSKFDDENFELKHTGPGVLSMANAGPGTNGSQFFICTVKTDFLDGKHVVFGGVTEGMDVIQKMEAVGSSPLGTTSKDVKIEDCGELE 187
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: D3WFS1_CONAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Conus anemone novaehollandiae TaxID=718021 RepID=D3WFS1_CONAN)

HSP 1 Score: 263 bits (673), Expect = 2.790e-83
Identity = 124/163 (76.07%), Postives = 138/163 (84.66%), Query Frame = 2 
Query:  224 NPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            NP V+FD+ IGG+PVGRI MEL A++VPKTAENFR LC GE GFG+KGS FHR+IP FMCQGGDFT  NGTGGKSIYGNKFEDENFKL HTG GILSMANAGPNTNGSQFF+CT KT +LDGKHVVFG V DGMDV+  +E VGS   GTTSK V+I DCG++
Sbjct:    3 NPQVFFDIEIGGKPVGRIVMELRADVVPKTAENFRALCTGEKGFGFKGSSFHRVIPGFMCQGGDFTRHNGTGGKSIYGNKFEDENFKLKHTGAGILSMANAGPNTNGSQFFLCTAKTQWLDGKHVVFGNVVDGMDVVKAIELVGSDS-GTTSKKVVIADCGQL 164
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: A0A7S2V2M4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2M4_9STRA)

HSP 1 Score: 260 bits (664), Expect = 2.270e-81
Identity = 126/196 (64.29%), Postives = 149/196 (76.02%), Query Frame = 2 
Query:  128 TLRLHFPYLAMNFALRASMARRVVSRAFTTAKNPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEIE 715
            T  L  P  A  F+     A  V+   F++  NP V+FD++IGG P GR+ ++L A++VPKTAENFR +C GE GFGYK SKFHRIIP FMCQGGD TAGNGTGGKSIYG  FEDENF L HTG GILSMANAGPNTNGSQFFICT  T +LDGKHVVFG V++G +V+ +MEAVGSSP GT S+ V I DCG+++
Sbjct:    9 TQALGAPQSAFRFS-----AVHVMKNCFSSDANPRVFFDISIGGSPAGRVVIDLRADVVPKTAENFRAICTGEKGFGYKNSKFHRIIPGFMCQGGDMTAGNGTGGKSIYGRSFEDENFDLKHTGAGILSMANAGPNTNGSQFFICTAPTPWLDGKHVVFGAVSEGEEVVKKMEAVGSSPHGTVSQEVEIVDCGQLD 199
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: A0A3Q3WTL1_MOLML (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3WTL1_MOLML)

HSP 1 Score: 258 bits (659), Expect = 3.540e-81
Identity = 121/163 (74.23%), Postives = 138/163 (84.66%), Query Frame = 2 
Query:  224 NPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            NP VYFD++IGG+  GRI M+LHA++VPKTAENFR LC GE GFGYKGS FHR+IP+FMCQGGDFT  NGTGGKSIYG KF DENFKL H GPG+LSMANAGPNTNGSQFF+CT KT +LDGKHVVFG+V DGMDV+  +EAVGS   G TSK V+I DCG++
Sbjct:    3 NPRVYFDISIGGKASGRIIMQLHADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPDFMCQGGDFTRHNGTGGKSIYGEKFADENFKLRHDGPGVLSMANAGPNTNGSQFFLCTVKTPWLDGKHVVFGKVVDGMDVVRAVEAVGSKT-GDTSKKVVIADCGQL 164
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: UPI001C4BB259 (peptidyl-prolyl cis-trans isomerase F, mitochondrial n=1 Tax=Plectropomus leopardus TaxID=160734 RepID=UPI001C4BB259)

HSP 1 Score: 259 bits (661), Expect = 4.730e-81
Identity = 127/187 (67.91%), Postives = 148/187 (79.14%), Query Frame = 2 
Query:  158 MNFALRASMARRVVSRAFTTA-KNPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEIE 715
            + F   A  A R+ S    TA KNP+VYFD++    P+GR+T EL+A +VPKTAENFR LC GE GFGYKGS FHR+IP+FMCQGGDFT  NGTGGKSIYG KF DENFKL HTGPGILSMANAGPNTNGSQFFICTTKT++LDG+HVVFG V +GMDV+ +MEA+GS   G  SK + I DCGE++
Sbjct:    8 VKFCSLAFTAARLYSSGPATANKNPTVYFDISANNEPLGRVTFELNAEVVPKTAENFRALCTGEQGFGYKGSTFHRVIPDFMCQGGDFTNHNGTGGKSIYGLKFPDENFKLKHTGPGILSMANAGPNTNGSQFFICTTKTEWLDGRHVVFGIVKEGMDVVKKMEALGSRS-GRPSKRITITDCGELD 193
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: A0A7S3LEC0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LEC0_9STRA)

HSP 1 Score: 259 bits (661), Expect = 5.790e-81
Identity = 126/182 (69.23%), Postives = 144/182 (79.12%), Query Frame = 2 
Query:  167 ALRASMARRVVSRAFTTAKNPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            A RAS   R  SR      NP V+FDM +GG  +GRI  EL A++VPKTAENFRQLC GE GFGYKGS FHR+IP FMCQGGDFT  NGTGGKSIYG KFEDENF+L H G GILSMANAGP TNGSQFFICT  T +LDG+HVVFG+VTDG+DV+D++EAVGS   G TSK V+++DCGE+
Sbjct:   21 AFRAST--RSFSRTSELFANPKVFFDMEVGGEDIGRIEFELRADVVPKTAENFRQLCTGEAGFGYKGSPFHRVIPQFMCQGGDFTNRNGTGGKSIYGAKFEDENFELKHVGKGILSMANAGPGTNGSQFFICTVDTPWLDGRHVVFGKVTDGLDVVDKIEAVGSQS-GATSKTVIVKDCGEL 199
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: A0A6A4XB75_AMPAM (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4XB75_AMPAM)

HSP 1 Score: 258 bits (659), Expect = 9.760e-81
Identity = 116/163 (71.17%), Postives = 137/163 (84.05%), Query Frame = 2 
Query:  224 NPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            NP V+FDM   G P+GRI MEL A++VP+TAENFR LC GE GFG+KG  FHR+IP FMCQGGDFT  NGTGG+SIYG++FEDENF L HTGPGILSMANAGPNTNGSQFF+C  KT++LDGKHVVFG VT+GMDV+ Q+E  GSSP G TSK ++I+DCG++
Sbjct:   32 NPRVFFDMTADGEPLGRIVMELRADVVPRTAENFRALCTGEHGFGFKGCSFHRVIPEFMCQGGDFTNHNGTGGRSIYGDRFEDENFTLKHTGPGILSMANAGPNTNGSQFFLCVAKTEWLDGKHVVFGAVTEGMDVVKQIEGYGSSPSGKTSKQIIIQDCGQL 194
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: D3WFS2_CONAN (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Conus anemone novaehollandiae TaxID=718021 RepID=D3WFS2_CONAN)

HSP 1 Score: 256 bits (655), Expect = 1.410e-80
Identity = 121/163 (74.23%), Postives = 135/163 (82.82%), Query Frame = 2 
Query:  224 NPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            NP V+FD+ IGG+P GRI MEL A++VPKTAENFR LC GE GFGYKGS FHR+IP FMCQGGDFT  NGTGGKSIYGNKFEDENFKL HT PGILSMANAGPNTNGSQFF+CT KT +LDGKHVVFG V +GMDV+  ME +GS   G TS  V+I DCG++
Sbjct:    3 NPQVFFDITIGGQPAGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTNHNGTGGKSIYGNKFEDENFKLKHTEPGILSMANAGPNTNGSQFFLCTVKTTWLDGKHVVFGSVVEGMDVVKAMEKLGSQS-GATSLKVVIADCGQL 164
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: UPI00193A9C48 (peptidyl-prolyl cis-trans isomerase A-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A9C48)

HSP 1 Score: 256 bits (655), Expect = 2.590e-80
Identity = 122/167 (73.05%), Postives = 138/167 (82.63%), Query Frame = 2 
Query:  212 TTAKNPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            T++ NP V+FD+NI G   GR+T EL  +IVPKTAENFR LC GE GFG+KGS FHRIIP FMCQGGDFT+GNGTGGKSIYG KF+DENF+L HTGPGILSMANAGPNTNGSQFFICT KT++LDGKHVVFG VTDGMDV+  ME+ G+   G   K V IEDCGE+
Sbjct:   13 TSSANPKVFFDINISGEKAGRVTFELRKDIVPKTAENFRCLCTGEKGFGFKGSHFHRIIPGFMCQGGDFTSGNGTGGKSIYGEKFKDENFQLKHTGPGILSMANAGPNTNGSQFFICTEKTEWLDGKHVVFGNVTDGMDVVRNMESKGTRG-GQVLKKVTIEDCGEL 178
[Close]
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Match: A0A7S1DY42_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DY42_9STRA)

HSP 1 Score: 257 bits (657), Expect = 3.120e-80
Identity = 126/187 (67.38%), Postives = 147/187 (78.61%), Query Frame = 2 
Query:  155 AMNFALRASMARRVVSR-AFTTAKNPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSKFHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMANAGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGTTSKAVLIEDCGEI 712
            A N      +ARR  SR A     NP V+FDM +GG  VGRIT EL+A++VPKTAENFR LC GE GFGYKGS FHR+IP+FMCQGGDFT  NGTGGKSIYG KFEDENF++ H G GILSMANAGPNTNGSQFFICT  T +LD KHVVFG+V DG+DV+D++E+VGS   G TS+AV ++DCGE+
Sbjct:   23 APNSRAAFHVARRAYSRSASVLMANPKVFFDMEVGGSEVGRITFELNADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQGGDFTNHNGTGGKSIYGEKFEDENFEMQHVGKGILSMANAGPNTNGSQFFICTIDTPWLDDKHVVFGKVVDGLDVVDKIESVGSQS-GATSQAVTVKDCGEL 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3345.8960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJN2_ECTSI1.930e-9877.54Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectoca... [more]
D3WFS1_CONAN2.790e-8376.07Peptidyl-prolyl cis-trans isomerase n=1 Tax=Conus ... [more]
A0A7S2V2M4_9STRA2.270e-8164.29Peptidyl-prolyl cis-trans isomerase n=1 Tax=Fibroc... [more]
A0A3Q3WTL1_MOLML3.540e-8174.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Mola m... [more]
UPI001C4BB2594.730e-8167.91peptidyl-prolyl cis-trans isomerase F, mitochondri... [more]
A0A7S3LEC0_9STRA5.790e-8169.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Amphor... [more]
A0A6A4XB75_AMPAM9.760e-8171.17Peptidyl-prolyl cis-trans isomerase n=2 Tax=Amphib... [more]
D3WFS2_CONAN1.410e-8074.23Peptidyl-prolyl cis-trans isomerase n=1 Tax=Conus ... [more]
UPI00193A9C482.590e-8073.05peptidyl-prolyl cis-trans isomerase A-like n=1 Tax... [more]
A0A7S1DY42_9STRA3.120e-8067.38Peptidyl-prolyl cis-trans isomerase n=1 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3345contigH-paniculata_contig3345:77..6359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score305.1
Seed ortholog evalue2.7e-80
Seed eggNOG ortholog2880.D8LJN2
KEGG koko:K09565
KEGG Pathwayko04020,ko04022,ko05012,ko05016,ko05145,map04020,map04022,map05012,map05016,map05145
Hectar predicted targeting categoryother localisation
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
Ec32 ortholog descriptionCyclophilin-like domain
Ec32 orthologEc-17_002700.1
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110
Exons5
Model size1476
Cds size645
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.1396496-UTR-H-paniculata_contig3345:76..1491622930033.1396496-UTR-H-paniculata_contig3345:76..149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3345 77..149 +
1691481118.7390342-UTR-H-paniculata_contig3345:76..1491691481118.7390342-UTR-H-paniculata_contig3345:76..149Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3345 77..149 +
1622930033.25086-UTR-H-paniculata_contig3345:5601..63591622930033.25086-UTR-H-paniculata_contig3345:5601..6359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3345 5602..6359 +
1691481118.7882168-UTR-H-paniculata_contig3345:5601..63591691481118.7882168-UTR-H-paniculata_contig3345:5601..6359Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3345 5602..6359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.1599221-CDS-H-paniculata_contig3345:149..3081622930033.1599221-CDS-H-paniculata_contig3345:149..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 150..308 +
1691481118.750599-CDS-H-paniculata_contig3345:149..3081691481118.750599-CDS-H-paniculata_contig3345:149..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 150..308 +
1622930033.1886268-CDS-H-paniculata_contig3345:802..8871622930033.1886268-CDS-H-paniculata_contig3345:802..887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 803..887 +
1691481118.7581024-CDS-H-paniculata_contig3345:802..8871691481118.7581024-CDS-H-paniculata_contig3345:802..887Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 803..887 +
1622930033.2083566-CDS-H-paniculata_contig3345:1486..16061622930033.2083566-CDS-H-paniculata_contig3345:1486..1606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 1487..1606 +
1691481118.7655785-CDS-H-paniculata_contig3345:1486..16061691481118.7655785-CDS-H-paniculata_contig3345:1486..1606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 1487..1606 +
1622930033.2244294-CDS-H-paniculata_contig3345:4254..43671622930033.2244294-CDS-H-paniculata_contig3345:4254..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 4255..4367 +
1691481118.7731202-CDS-H-paniculata_contig3345:4254..43671691481118.7731202-CDS-H-paniculata_contig3345:4254..4367Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 4255..4367 +
1622930033.2392507-CDS-H-paniculata_contig3345:5433..56011622930033.2392507-CDS-H-paniculata_contig3345:5433..5601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 5434..5601 +
1691481118.7807295-CDS-H-paniculata_contig3345:5433..56011691481118.7807295-CDS-H-paniculata_contig3345:5433..5601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3345 5434..5601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3345.8960.1prot_H-paniculata_contig3345.8960.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3345 150..5601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3345.8960.1

>prot_H-paniculata_contig3345.8960.1 ID=prot_H-paniculata_contig3345.8960.1|Name=mRNA_H-paniculata_contig3345.8960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=215bp
MPFASPSSTCLRLCFTPDTLRLHFPYLAMNFALRASMARRVVSRAFTTAK
NPSVYFDMNIGGRPVGRITMELHANIVPKTAENFRQLCIGEPGFGYKGSK
FHRIIPNFMCQGGDFTAGNGTGGKSIYGNKFEDENFKLGHTGPGILSMAN
AGPNTNGSQFFICTTKTDFLDGKHVVFGEVTDGMDVLDQMEAVGSSPMGT
TSKAVLIEDCGEIE*
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mRNA from alignment at H-paniculata_contig3345:77..6359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3345.8960.1 ID=mRNA_H-paniculata_contig3345.8960.1|Name=mRNA_H-paniculata_contig3345.8960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6283bp|location=Sequence derived from alignment at H-paniculata_contig3345:77..6359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGACTACGGGTCTGAATGATCAAACCTTTGAGACCTGTGCTCCAGAAG
AAAATTCATACTTGTCTCTGGCTATGCCCTTTGCATCTCCCAGCTCCACC
TGTTTGCGATTGTGCTTCACACCTGACACTTTGCGCTTGCATTTTCCGTA
TCTCGCTATGAACTTCGCTTTGAGAGCTTCGATGGCACGACGAGTTGTTA
GTCGAGCGTTTACAACGGCGAAGAACCCCTCGGTGAGTCGCAAGAGTGCA
CAAAAATGTGCGTCAAAACATGCCGAATGTCAAGTTGACAGCCGTTCGTC
TGGCACTGATTAAGCGCCTAGCAGAGCCCTACTGGTTGGTTAAGGAATGC
ACAACAGTGCGATAGCTAGGGTTGGGGTTATTCAGTACATGACTGTATTC
AGCCCATCAGCAACAGATGACTTGTCGACAACTGAAATTGACGTTGGAAC
TGCTGCACTGCAACTGATTTGCCACCTCTGACCCGCAGTTGTCAATGAAC
TGTTGAAGATTCCGTATCGCTGCCTGTGGTGATTTTTCAAAGCTAGAGAA
AGGTGTGTGTTTAGGTCGACAGTACAGGCCTTCTACCGTGCTGTACTGTG
CGCTGTTGCATTGATCATAGCTGTGGATGGTGGTGTGTGATGCCATCCTA
CCTGCCTGTAGAACGCCTTCCTCTGACATTGCTCTCATTCGTGTTTTCGC
TGTGAAATTTTTTGTGGTGAGGAAAGGTGTACTTCGACATGAACATCGGT
GGAAGGCCTGTAGGCAGGATAACTATGGAACTCCACGCCAACATCGTTCC
AAAAACAGCAGGTCTGGCTTTAATTCATATTTACTGTTTTCATTGAAAGT
TCAATTACGCAAAAATGGAGAATGTGAAAGTTCCGGTCAAGGAACTGTTA
ACGCAATGTTTGCAGACAAGTATCATGTTTGTTTTTTTATCCGGGCTGTG
GACAGGAAAATACCCTCGTCGATTCTGAACAGTTTTGGGTACAGAGTAAG
CCAATTGAGGAGTTGTAGAATCCCAAGTGATTACCTGCACTGTGCCGTAG
TCTGTAGGGTCAAAACACCAGTTATTACTTTTATTTAGGACTCACGTTTT
GTCGAGAAGCAAAGCGCTCTCAATATCGAAACCACATTGTCTACCAACAC
ATATTTCATGATGGTACACCCTCTGCCCATACTAACGTTCGGCAATCATT
TGAGCGAGATACAATGTATACAGTAATGCCTCGTGTATTACTACTCGAGG
GGGCTTGTTCATTTTTTTGTTTGCGTTCAGTGGTTGGCATCTGTACGAAG
TCCACATCATCATTCACCTCCGCCGGTTTGACGTAATCATACTGAAGACT
TATTGGTCCCTTTTGTCTGTCGCTCATTCGATGACAACGGTTGGCCTTAT
CGGAAAAAAGAGAACTTTCGACAATTGTGCATCGGGGAGCCCGGATTCGG
GTACAAGGGTTCCAAGTTCCATAGGATTATCCCGAACTTCATGTGCCAGG
GGGGTGACTTCACGGCCGGCAACGGCACTGGTGAGATCAATGACTACGTA
TACAGCTAGCGAGAAGTCGAGAATAACGACACCAAAAAACGGACGTTCTT
TCTTGGACAAGGAAACCCTTTCCGCGCCGTGTGACCGACAGACAGGTTAA
GTGAACATTAGTATGTGATTGTCCTGGTACCTTATTGAACAGACCAGTGT
TATGAATAAGACACAAAGTTTGATTCCCGCGTGTAGAGCTTACTGCAAGG
TGCTTGGCAATTTGTGTTATTGGGGCCTGATGTTTATAAAAAAAAGTAGA
GATTTGGAAATGTCGTAGCATATGTTTTGACGGCAATTGTAGCGCAGCAA
CTTTTGCGCTGGCAGTAGTGTGAATGCGTTGGATTGGGGGCGTCATGTCT
TCTTTCTGATTTGGAGTGGTGCGTGCTTTCTTACTTTTCGGATACGTCCC
AGATCATGAGCTGTGCTGCGTTGCTGTTCCACTTGTGTTGCAATTCGGTG
AATGATGTCGATACAAATGTTTTTGTGGGCGAAGAGGTCAAGTGTGGTAC
CACAACCTTCACCTGTTATTCGTGAGGATTTTTTGGTATGTCGTGGTCTA
CACACCAATACAAGTTCTGGACGTTTAAAGACACTATGACCGCTGTGTCC
GTCCTATTACTAGCAACGTTCCTGGTGAGGAGTGAGCGCATGTGATGACA
CCTGTAGTGTGCGGGTCATTAAATGGTCGTGGTTGGTTCCATGATGTTGA
AGCTGGGGTGAGGTATTTTTGTGTTGGGCGGATTTTTGGATGCTGCGAGT
CTACTGATGGAAAATTTTTCATGTGTTATCACAAGTGTGTGATATCGATA
CGCTGAACTTGGCCTCGTGGACACTAGAGAGCACGAAACCACCTCGCAAG
AACACTGGGGCACGGTTAATGTCCTCAGCCTACGGTAAACGTCTTGCACA
ACTTTCAAACTTCGCCCAGCAGCATTTCTGATGCCCACACGCTTTTCAGT
TCTGTGCAATCAGTGGATCGTAATTAAAAACCTGAATTACACTGACGATA
GGTCATTGCCACTTTGGTCGACCAAAGGAATGTATAATTCTGACGGTCTG
GAGTGTCTGTATTAATTGACTGGCTGTTGACTGCTGATTGCCAGCGAGTT
GATCAAAAGCTCACAACGTCAACGGCTGCACGAGGCGGTAGCCTCCTCCT
GTATCACACGTTTTGTGGGGTGATATTATTAGCTTGACTTCTCTAGTAAA
CGCATCATGTGGGCATGTGTTGATGTGTGGTGCTTTTTTTGGTGAAGGAG
CTCTCGGTCGGACAAAAGAGACGATAATTAAGTTTGCAAAACAAATGCTA
TATCTTGTTTCTGTTGCATTACTTGATCATTTTGTGCACGCCGCGTTCAG
TCCCATCTTGGGTGAGCGTTGAAAGACACTGCACAGCATCCCTTTTATGT
CTTTCAAGCATGGCACGTGCAAAGGCCCGTCTGGAGTGATCGCGCTCTCC
GCCTGCGCGGCGTGTTGCTAGATGAGCAATCCTACACAAAAAAATGCTTT
TCCTTGTCCTCGCCAGTCGAATACGCCCTGTTTTATTGGATTACTGTTCT
TTACTCTCGCGTGAGTTGCAAAACAAGTGGTTCTGCGTTGCCGTTGTAGC
AAAAGTCAGAGGTCATCGTTGTTGGGCTTTCGGTTTTGAAGGCCAAAAGA
GAACCTCTTATTCATTTGATTTTGCTGATGCGTTTATATAACTGTAGATT
GAAGTCAGCTGCATATAGACCCCCCCCCCCCCTCTCCCCCCTCCCCTCTG
AAGTGTGTTCAGTATGTGGATAATAACAAATAATTCAGCAGCTTAAAGAT
TCTGAACATACCTCCGTTTTGTTTTACGATTATTGTCATGTCAACAACAG
AGCGCATGAGTTGTGCATCCCTGCTTGTACCTTTGACTCGCTCTTTGCTC
TATGATACCTTCTCCAAAGCACATTCTCATTGTTTAGGCGTCGTCCTCCT
GATGAAGTTGTCCTTAGCAACTAATAGGTATGTTGATGTTGCTATGTTGT
AGTTGGTAGATTTCTTGCTCCTGCATGAAGTGCACTACTGGTCATCTCAT
CACTTCTGCATGTTGTTGTTACCACGTATAATGCAGTGTGGAGTTTTGGT
ATCAGTCTCGACCGTCTTATGCATACGAAATATCAAATCCAATTCGTGTG
TTCAGGTGCACGTAATGGTGGCAGTAGAGCGGTAGCGGGAGCACATTGCA
AGGGAGAGAGAGTAGTGAGCACTTGTTCGCGTGTAGCGCTCCTTGCTAAG
CGGACACCAATCTTCAACACTAGCGTCGTCCTAAACACTGCCAAGTAACT
CTAAACTGATGCATTTTATTTGCCACTTCTGGAGTGATACACACGGAGCG
GTTTTCTTTCTGCTCCCCTTTATCATACTCTCGAGCTGGTCATCTTGTAT
CGCACCCCCCCTAAATCCAGACACCATGTTTCCCGCCATGTGGTTGACTG
AAATAACCGACGATAGCTGAACAATGCAAAAGCCATTTCTTTTTCGAATG
AAGACTGAACTCCCCCTCATATTTTTGTCACACCGTTCCCAATATTGTGA
TTCATGTGAACATGATGATTGCCATTGATCGCGCTACACACCCTCTCATC
GTGGTGGCCATCTCCACGCTTTCCTCAGGCGGGAAGTCAATATACGGGAA
CAAGTTTGAGGACGAAAATTTCAAACTGGGGCATACCGGACCCGGCATTC
TCTCCATGGCAAACGCAGGACCCAACACGAATGGCAGCCAGGCAAGAGAA
TGGATCCCCCCCCCCCCCCCCTCCCGAGATTTCGCACATTATTTCTATTG
GAAGCACTGAGTGCCCGGTCCTGCACATAATCAAAGGCTGATAAGTTCAA
CTGCAGTCAGTAGCAGTTGTAGCAGTGCGCGTTTTGTTTATTCAAGCAGT
GTAGTGTACCCTAAGCATACACTTGTATGCTCAGAGCTCACTCGTTACAC
AGCGTAAGCAAATTCGAGACAGTGGTGTTTGCGGCAGGTGGTTCAAATCC
ATATTGCGGGCACCATTCTTTTGGTTTTGCCTAGAGCCTCGTGTCCCTCG
TGTGTTTGGTTGCGGCCTTACTGCTTGAAACTCCCGTAGAATCCAGAGTC
TCCTTGACAAGGGTCCATGATATGGATGCTTGCATGTAGGACTGGGTGCC
TCGTTCTGTTCTATGGGCTCTTTCCGTGCATACTTTCAGCATTTCTAGTG
GATATTCTCAGTTCTGAACCCGAAATAGACGTCAACCGACTGTGATGCAG
CTGAGCGCTTTGATACCTCAGTCCGAAACACGCTACTCCGGAATGACCTA
TCCCTGTCCGCTCCGTTCCCGTAAGGACTCGAGATCAACGGTTTGACAGC
TCAGACATGAAAAAACATGCTCCCATCTCCGCGGATTGTAGGCGTATGTT
CTACGTTGTAACGAATAAGTCAAGCACAACCTGACCCCCTGACGGTTACG
TGGTTGAGTGATGTCTAGACGCCATGGTTAGCCTTTTTCGTACCGGAGGC
TGATTGGGGACAAAAAGAAATCCATCTGACGTAAGATATCGGGCGAGCAG
TCATTGTGGGCAGAACCGCGCCTGTGCTACCCGTCTGTGCTGTATGTACT
GCCGGCGCTGAACTTCGGTCTGAACAGCAGCGGCTTTCTATCCCCGTGAT
CGTGTTTGTCATAATCATGTTTTTTTACCCCATTGTCGAGGTGGGGATTA
TTTAGGCAGACGTTGATTAGCTCGGAAAGCGTCCAAGAAATGCTAGTAAA
AGAAACTGTGCACGCTCACAAACGGTTTTCGGCCTCCCTCCCTGGCGCGC
TCGACAGTTCTTTATCTGCACCACCAAGACAGACTTCTTGGACGGAAAGC
ATGTCGTATTCGGCGAAGTTACGGATGGCATGGACGTGCTTGACCAAATG
GAAGCGGTTGGAAGCTCCCCAATGGGTACAACGTCCAAGGCTGTATTGAT
CGAGGATTGCGGGGAGATCGAATAACGCCGTTCTCAATGAGGGTTCACAT
TTGATTCTTTGGGGGGGATTTGTCTGTATTACAGTAAAGGTGATGGTCTT
GTCTGTGGACGCTGTGCTGAGTAGCTATATGGTTGGTCTCTTTGATGCTA
CGTCAGCCGTTTTTTCTTGCGTAGTTTTTTGCGGGTCAGCGCAGGTAGCC
AATCACGCGTGAAAATTGTGGCATATTTGAATGATGGGCAGGATGAAACC
CCCATGGTTTGCAAAGTATGAGATATGATTGCAAACTCGTCTGGTAATTT
TGATGTTCCATCGGCTTGACGGGTATTGAATTCGCTTAAATGAGTTTCTC
ACCTAGTTTTGTTAAAGTTTCCACGTTGTGTTTATTTGATGGGGACATGC
ATAATCAATACCTAGTTTATGTCATGTCTTGCACACCATTTCTTTTACCC
ATGACATATGCTATTGTACACCCGCAGACGTTGGTTCTTGTCATTAGATT
CCCAGGTGTGCATTCCGTTGTTGTGGTAAGCCGGCATGACTTCCTAGAGT
TTCAGGAACGCTCACTAATAGTGCCGATGCAGATAAGGATCGGGCATAGG
AGCGGAATTGGTAACTGAAGTCGCTAAACGTGGCTCATCCCATCGCCCTC
ACTCTCTCTTTGTCTTCCTCTGCGATTGAAATAAGATTTGAGATGTTGAG
AATCAACGAGAGGGAAACACGAAGAAAAGCGCTATGAAGAAAACATGGTT
TTCCCGATATATTGTAATAACCGTCGCACTACA
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Coding sequence (CDS) from alignment at H-paniculata_contig3345:77..6359+

>mRNA_H-paniculata_contig3345.8960.1 ID=mRNA_H-paniculata_contig3345.8960.1|Name=mRNA_H-paniculata_contig3345.8960.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at H-paniculata_contig3345:77..6359+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCTTTGCATCTCCCAGCTCCACCTGTTTGCGATTGTGCTTCACACC
TGACACTTTGCGCTTGCATTTTCCGTATCTCGCTATGAACTTCGCTTTGA
GAGCTTCGATGGCACGACGAGTTGTTAGTCGAGCGTTTACAACGGCGAAG
AACCCCTCGATGCCCTTTGCATCTCCCAGCTCCACCTGTTTGCGATTGTG
CTTCACACCTGACACTTTGCGCTTGCATTTTCCGTATCTCGCTATGAACT
TCGCTTTGAGAGCTTCGATGGCACGACGAGTTGTTAGTCGAGCGTTTACA
ACGGCGAAGAACCCCTCGGTGTACTTCGACATGAACATCGGTGGAAGGCC
TGTAGGCAGGATAACTATGGAACTCCACGCCAACATCGTTCCAAAAACAG
CAGGTGTACTTCGACATGAACATCGGTGGAAGGCCTGTAGGCAGGATAAC
TATGGAACTCCACGCCAACATCGTTCCAAAAACAGCAGAGAACTTTCGAC
AATTGTGCATCGGGGAGCCCGGATTCGGGTACAAGGGTTCCAAGTTCCAT
AGGATTATCCCGAACTTCATGTGCCAGGGGGGTGACTTCACGGCCGGCAA
CGGCACTGAGAACTTTCGACAATTGTGCATCGGGGAGCCCGGATTCGGGT
ACAAGGGTTCCAAGTTCCATAGGATTATCCCGAACTTCATGTGCCAGGGG
GGTGACTTCACGGCCGGCAACGGCACTGGCGGGAAGTCAATATACGGGAA
CAAGTTTGAGGACGAAAATTTCAAACTGGGGCATACCGGACCCGGCATTC
TCTCCATGGCAAACGCAGGACCCAACACGAATGGCAGCCAGGCGGGAAGT
CAATATACGGGAACAAGTTTGAGGACGAAAATTTCAAACTGGGGCATACC
GGACCCGGCATTCTCTCCATGGCAAACGCAGGACCCAACACGAATGGCAG
CCAGTTCTTTATCTGCACCACCAAGACAGACTTCTTGGACGGAAAGCATG
TCGTATTCGGCGAAGTTACGGATGGCATGGACGTGCTTGACCAAATGGAA
GCGGTTGGAAGCTCCCCAATGGGTACAACGTCCAAGGCTGTATTGATCGA
GGATTGCGGGGAGATCGAATAATTCTTTATCTGCACCACCAAGACAGACT
TCTTGGACGGAAAGCATGTCGTATTCGGCGAAGTTACGGATGGCATGGAC
GTGCTTGACCAAATGGAAGCGGTTGGAAGCTCCCCAATGGGTACAACGTC
CAAGGCTGTATTGATCGAGGATTGCGGGGAGATCGAATAA
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