mRNA_H-paniculata_contig33440.8958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.120e-56 Identity = 136/427 (31.85%), Postives = 214/427 (50.12%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLH------------KVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQL 1322
+L S R+L A+A W +Y DV AFLNA ++ + APG E+ D TT + V L++S+YGL QSP++WN I++ + G T SDPCVY S +L+++VDDIL+TG ++ + M F T++GEV ++G+EV R+ + GTL +SQ Y IL R+ M + TP + S D LL + +QA + S+ + + S VH+ T A ++ + + LL Y I + R+ + G+ F GL+ + ++ Q + A +T EAEL L+ A++ VY E+G + S + SD+ GAL +A+N+ SSR+KH+A+RF LR+ T+ ++ + H S+ LADI TKH + F +
Sbjct: 306 RLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQA------ITGSLLYLAQCTRYDLSYAVHQLTRACA-NPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATI 725
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE) HSP 1 Score: 201 bits (510), Expect = 6.560e-56 Identity = 140/401 (34.91%), Postives = 196/401 (48.88%), Query Frame = 3
Query: 147 DVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSL--FAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFS-----ANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQINSCQ--VRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQL 1322
DV AFL A +QE +F +Q PGFE D VM L +S+YGL QSP W +TID + +G SDPCVY N I L+L+VDD+L+ G + V + K+F T+LGE SL+LGME+ R+++ TL +SQ+ Y SIL+RF MS T TP ++ S D+LLD T +YQ G L +R+ + P+ + A +L AG + + + + NG S AN + F S LQ +TA+ST EAEL+ A K+ V+ + ELG Q V DN LH N + SSR+KH+A+RF +R+ ++ I + + D LADI TKH + F L
Sbjct: 30 DVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQ--GIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHL 428
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 197 bits (500), Expect = 5.120e-54 Identity = 138/438 (31.51%), Postives = 216/438 (49.32%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHE----CTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQI-------GTGRLL*RIVLHKVYN--------GHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
++ S R+ A+ +W IY DV AFLNA ++ + APG +S T +P V L+RS+YGL QSP +WN T+D + G T SDPCVY S + ++L+++VDDIL+TG +L+ + +F T++GEV ILG++V R+ + GTL +SQ+ YV + L+RF M + T + S D +L + YQ+ + S+ + Q S + C+NP + + A L +L+ N + G RL N G+ F A GL+ + ++ Q +TA ST EAE+ L+ A++ VY EL + S + SD+ GAL +A N+ S R+KH+A+R+ +R+ Q+ + H S QLADI TK+ + F + +I
Sbjct: 65 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQS------MTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVL--------RYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 488
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 199 bits (507), Expect = 1.780e-53 Identity = 139/435 (31.95%), Postives = 216/435 (49.66%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQAN-GRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQI-------GTGRLL*RIVLHKVYN--------GHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
++ S R+ A+ +W IY DV AFLNA ++ + APG +S T +P V L+RS+YGL QS +WN T+D + +G T SDPCVY S + ++L+++VDDIL+TG +L+ + +F T++GEV ILG++V R+ + GTL +SQ+ YV ++L+RF M + TP + S D +L + YQ+ G +L R L C+NP + + A L +L+ N + G RL N G+ F A GL+ + ++ Q +TA ST EAE+ L+ A++ VY EL + S + SD+ GAL +A N+ S R+KH+A+R+ +R+ Q+ + H S QLADI TK+ + F + +I
Sbjct: 273 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCT---RFDLSYAALQLSKACSNPAQVNMTAAKHVL--------RYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 696
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 201 bits (512), Expect = 1.790e-53 Identity = 139/435 (31.95%), Postives = 215/435 (49.43%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQA-NGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQI-------GTGRLL*RIVLHKVYN--------GHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
++ S R+ A+ +W IY DV AFLNA ++ + APG +S T +P V L+RS+YGL QSP +WN T+D + G T SDPCVY S + ++L+++VDDIL+TG +L+ + +F T++GEV ILG++V R+ + GTL +SQ+ YV ++L+RF M + TP + S D +L + YQ+ G +L R L C+NP + + A L +L+ N + G RL N G+ F A GL+ + ++ Q +TA ST EAE+ L+ A++ VY EL + S + SD+ GAL +A N+ S R+KH+ +R+ +R+ Q+ + H S QLADI TK+ + F + +I
Sbjct: 429 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCT---RFDLSYAALQLSKACSNPAQVNMTAAKHVL--------RYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 852
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 201 bits (512), Expect = 6.630e-53 Identity = 143/423 (33.81%), Postives = 207/423 (48.94%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSL--FAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFS-----ANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQINSCQ--VRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQL 1322
+++S R++ + + I DV AFL A +QE +F +Q PGFE D VM L +S+YGL QSP W +TID + +G SDPCVY N I L+L+VDD+L+ G + V + K+F T+LGE SL+LGME+ R+++ TL +SQ+ Y SIL+RF +S T TP ++ S D+LLD T +YQ G L +R+ + P+ + A +L AG + + + + NG S AN + F S LQ +TA+ST EAEL+ A + V+F + ELG Q V DN LH N + SSR+KH+A+RF +R+ ++ I +V + D LADI TKH + F L
Sbjct: 1238 RIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQ--GIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE) HSP 1 Score: 196 bits (498), Expect = 3.660e-51 Identity = 138/440 (31.36%), Postives = 215/440 (48.86%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQA-NGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVY-------------------NGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQG-VYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
++ S R+ A+ +W IY DV AFLNA ++ + APG +S T +P V L+RS+YGL QSP +WN T+D + G T SDPCVY S ++ ++ S++VDDIL+TG +L+ + +F T++GEV ILG++V R+ + GTL +SQ+ YV ++L+RF M + TP + S D +L + YQ+ G +L R L C+NP + + A +L Y I R R+ ++ G+ F A GL+ + ++ Q +TA ST EAE+ L+ A++ VY EL + S + SD+ GAL +A N+ S R+KH+A+R+ +R+ Q+ + H S QLADI TK+ + F + +I
Sbjct: 652 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCT---RFDLSYAALQLSKACSNPAQVNMTAAKH-----VLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 1083
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 192 bits (487), Expect = 4.840e-50 Identity = 136/425 (32.00%), Postives = 214/425 (50.35%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQA-NGRKSHLP-----DSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
++ S R+ A+A + W ++ DV VAFL + + ++ K APG + D T V L+RS+YGL QSP +W TID + +G PT SDPCVY GS T ++L+L+V+DIL++G L+ D+ + +F T++GEV LILGM+V R+ + GTL +SQ YV SIL+ M + + P A D LL A ++ YQ+ G +L D Y + L + C+ P ++A+++ L Y GT LL I+ + F+ + + T + E+EL ++ AK+ Y + L + + + SD+ G L LAAN+ SSR+KH+A+RF L++ + + + + HV + LADI TKH +R F + +I
Sbjct: 467 RIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCN----------PPA----DELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRA--------CSKP-----ARAHTTAAKHALRYIR-------GTPDLL--IIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQV-ESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQI 854
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE) HSP 1 Score: 189 bits (480), Expect = 1.070e-48 Identity = 126/396 (31.82%), Postives = 197/396 (49.75%), Query Frame = 3
Query: 81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLH------------KVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTR 1229
+L S R+L A+A W +Y DV AFLNA ++ + APG E+ D TT + V L++S+YGL QSP++WN I++ + G T SDPCVY S +L+++VDDIL+TG ++ + M F T++GEV ++G+EV R+ + GTL +SQ Y IL R+ M + TP + S D LL + +QA + S+ + + S VH+ T A ++ + + LL Y I + R+ + G+ F GL+ + ++ Q + A +T EAEL L+ A++ VY E+G + S + SD+ GAL +A+N+ SSR+KH+A+RF LR+ R
Sbjct: 1085 RLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQA------ITGSLLYLAQCTRYDLSYAVHQLTRACA-NPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRNSRR 1473
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS) HSP 1 Score: 178 bits (452), Expect = 4.590e-47 Identity = 131/444 (29.50%), Postives = 214/444 (48.20%), Query Frame = 3
Query: 60 EQFFTSMQLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSS---VDLTKTPSIKTDPSAASNGDSLLDGAATEEYQ----------ANGRKSHLPDSVYKIRHLLQRHPSSTVHECTN-----PTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQINSCQ-VRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
E + ++L++ RLL+A+A ++ II+G DV A+LN K+ ESI+ Q P + A LK +YGL+QS VWN ++ +G T +SD CVY + + I++++ VDD+ + P D + ++ + KK ++GE+ ILGM++ RN GT+ LSQ Y+L +L+R M+ V + P+++ + A GDS AT +Y ANG + + +V ++ +Q + V L Y L+ Y D + G R R +G+ A G V +SS+ Q A+ST EAE + LA ++ ++ + ELGL + + DN+ A+ A N +RSKH+ IR +R+ S ++ + H +S + LADI TK R + L + I
Sbjct: 64 ETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAH-----LKLMLYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGPIIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPA--GDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYGRTMDELIPYSD----SDWGEDRADRRST-----SGYVCTYAGGAVTWSSKKQPTVALSTMEAEYMALAHTTREVIWLRALLTELGLPPDGATTIFVDNQSAIKFAENPIFHARSKHIDIRHHFVRERMASNEVKVQHCASEENLADIFTKGLPRPLHEYLSAGI 491 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33440.8958.1 >prot_H-paniculata_contig33440.8958.1 ID=prot_H-paniculata_contig33440.8958.1|Name=mRNA_H-paniculata_contig33440.8958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp MDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRback to top mRNA from alignment at H-paniculata_contig33440:83..1416+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33440.8958.1 ID=mRNA_H-paniculata_contig33440.8958.1|Name=mRNA_H-paniculata_contig33440.8958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1334bp|location=Sequence derived from alignment at H-paniculata_contig33440:83..1416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33440:83..1416+ >mRNA_H-paniculata_contig33440.8958.1 ID=mRNA_H-paniculata_contig33440.8958.1|Name=mRNA_H-paniculata_contig33440.8958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig33440:83..1416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |