mRNA_H-paniculata_contig33440.8958.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33440.8958.1
Unique NamemRNA_H-paniculata_contig33440.8958.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 209 bits (531), Expect = 1.120e-56
Identity = 136/427 (31.85%), Postives = 214/427 (50.12%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLH------------KVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQL 1322
            +L S R+L A+A    W +Y  DV  AFLNA     ++ + APG E+ D TT +  V  L++S+YGL QSP++WN  I++ +   G   T SDPCVY   S     +L+++VDDIL+TG    ++     + M  F  T++GEV  ++G+EV R+ + GTL +SQ  Y   IL R+ M   +   TP    + S     D LL     + +QA      +  S+  +    +   S  VH+ T   A   ++ + +    LL Y        I   +   R+               +   G+  F   GL+ + ++ Q + A +T EAEL  L+  A++ VY      E+G +   S  + SD+ GAL +A+N+  SSR+KH+A+RF  LR+ T+  ++ + H  S+  LADI TKH  +  F  +
Sbjct:  306 RLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQA------ITGSLLYLAQCTRYDLSYAVHQLTRACA-NPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATI 725          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 6.560e-56
Identity = 140/401 (34.91%), Postives = 196/401 (48.88%), Query Frame = 3
Query:  147 DVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSL--FAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFS-----ANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQINSCQ--VRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQL 1322
            DV  AFL A +QE +F +Q PGFE  D       VM L +S+YGL QSP  W +TID  +  +G     SDPCVY    N   I L+L+VDD+L+ G     +  V  +  K+F  T+LGE SL+LGME+ R+++  TL +SQ+ Y  SIL+RF MS    T TP   ++ S     D+LLD   T +YQ  G    L      +R+ +             P+ +    A  +L   AG + +    +               +   NG    S     AN  + F S LQ +TA+ST EAEL+  A   K+ V+   +  ELG      Q  V  DN   LH   N + SSR+KH+A+RF  +R+     ++ I +  + D LADI TKH  +  F  L
Sbjct:   30 DVSTAFLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQ--GIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHL 428          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 5.120e-54
Identity = 138/438 (31.51%), Postives = 216/438 (49.32%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHE----CTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQI-------GTGRLL*RIVLHKVYN--------GHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
            ++ S R+  A+    +W IY  DV  AFLNA     ++ + APG    +S T +P V  L+RS+YGL QSP +WN T+D  +   G   T SDPCVY   S +  ++L+++VDDIL+TG   +L+     +   +F  T++GEV  ILG++V R+ + GTL +SQ+ YV + L+RF M   +   T     + S     D +L     + YQ+      +  S+  +    Q   S    +    C+NP  +  + A   L         +L+ N +       G  RL          N        G+  F A GL+ + ++ Q +TA ST EAE+  L+  A++ VY      EL  +   S  + SD+ GAL +A N+  S R+KH+A+R+  +R+     Q+ + H  S  QLADI TK+  +  F  +  +I
Sbjct:   65 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQS------MTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVL--------RYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 488          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 1.780e-53
Identity = 139/435 (31.95%), Postives = 216/435 (49.66%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQAN-GRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQI-------GTGRLL*RIVLHKVYN--------GHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
            ++ S R+  A+    +W IY  DV  AFLNA     ++ + APG    +S T +P V  L+RS+YGL QS  +WN T+D  +  +G   T SDPCVY   S +  ++L+++VDDIL+TG   +L+     +   +F  T++GEV  ILG++V R+ + GTL +SQ+ YV ++L+RF M   +   TP    + S     D +L     + YQ+  G   +L       R  L          C+NP  +  + A   L         +L+ N +       G  RL          N        G+  F A GL+ + ++ Q +TA ST EAE+  L+  A++ VY      EL  +   S  + SD+ GAL +A N+  S R+KH+A+R+  +R+     Q+ + H  S  QLADI TK+  +  F  +  +I
Sbjct:  273 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCT---RFDLSYAALQLSKACSNPAQVNMTAAKHVL--------RYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 696          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 1.790e-53
Identity = 139/435 (31.95%), Postives = 215/435 (49.43%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQA-NGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQI-------GTGRLL*RIVLHKVYN--------GHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
            ++ S R+  A+    +W IY  DV  AFLNA     ++ + APG    +S T +P V  L+RS+YGL QSP +WN T+D  +   G   T SDPCVY   S +  ++L+++VDDIL+TG   +L+     +   +F  T++GEV  ILG++V R+ + GTL +SQ+ YV ++L+RF M   +   TP    + S     D +L     + YQ+  G   +L       R  L          C+NP  +  + A   L         +L+ N +       G  RL          N        G+  F A GL+ + ++ Q +TA ST EAE+  L+  A++ VY      EL  +   S  + SD+ GAL +A N+  S R+KH+ +R+  +R+     Q+ + H  S  QLADI TK+  +  F  +  +I
Sbjct:  429 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCT---RFDLSYAALQLSKACSNPAQVNMTAAKHVL--------RYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 852          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 6.630e-53
Identity = 143/423 (33.81%), Postives = 207/423 (48.94%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSL--FAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFS-----ANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQINSCQ--VRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQL 1322
            +++S R++  +    + I    DV  AFL A +QE +F +Q PGFE  D       VM L +S+YGL QSP  W +TID  +  +G     SDPCVY    N   I L+L+VDD+L+ G     +  V  +  K+F  T+LGE SL+LGME+ R+++  TL +SQ+ Y  SIL+RF +S    T TP   ++ S     D+LLD   T +YQ  G    L      +R+ +             P+ +    A  +L   AG + +    +               +   NG    S     AN  + F S LQ +TA+ST EAEL+  A    + V+F  +  ELG      Q  V  DN   LH   N + SSR+KH+A+RF  +R+     ++ I +V + D LADI TKH  +  F  L
Sbjct: 1238 RIQSVRMVACITVEFNLIFDQMDVSTAFLYADIQEEVFVEQPPGFEVKDKDGGD-MVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQ--GIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHL 1657          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 3.660e-51
Identity = 138/440 (31.36%), Postives = 215/440 (48.86%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQA-NGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVY-------------------NGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQG-VYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
            ++ S R+  A+    +W IY  DV  AFLNA     ++ + APG    +S T +P V  L+RS+YGL QSP +WN T+D  +   G   T SDPCVY   S ++ ++ S++VDDIL+TG   +L+     +   +F  T++GEV  ILG++V R+ + GTL +SQ+ YV ++L+RF M   +   TP    + S     D +L     + YQ+  G   +L       R  L          C+NP  +  + A       +L Y        I   R   R+   ++                     G+  F A GL+ + ++ Q +TA ST EAE+  L+  A++  VY      EL  +   S  + SD+ GAL +A N+  S R+KH+A+R+  +R+     Q+ + H  S  QLADI TK+  +  F  +  +I
Sbjct:  652 RIGSIRMTCAIGCHNNWPIYQLDVVGAFLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCT---RFDLSYAALQLSKACSNPAQVNMTAAKH-----VLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQI 1083          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 4.840e-50
Identity = 136/425 (32.00%), Postives = 214/425 (50.35%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQA-NGRKSHLP-----DSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
            ++ S R+  A+A  + W ++  DV VAFL   + + ++ K APG +  D  T    V  L+RS+YGL QSP +W  TID  +  +G  PT SDPCVY  GS  T ++L+L+V+DIL++G    L+ D+  +   +F  T++GEV LILGM+V R+ + GTL +SQ  YV SIL+   M + +          P A    D LL  A ++ YQ+  G   +L      D  Y +  L +         C+ P     ++A+++     L Y         GT  LL  I+  +       F+ +         +  T +   E+EL  ++  AK+  Y   +   L  + +    + SD+ G L LAAN+  SSR+KH+A+RF  L++  + + + + HV +   LADI TKH +R  F  +  +I
Sbjct:  467 RIGSVRIFFAIACERGWPVWQMDVAVAFLQPTIDKDVWVKPAPGQDAKDPATGGIMVYKLERSLYGLAQSPVLWYDTIDEVLVVIGFRPTQSDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCN----------PPA----DELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRA--------CSKP-----ARAHTTAAKHALRYIR-------GTPDLL--IIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQV-ESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLDRNKFNSIIHQI 854          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 1.070e-48
Identity = 126/396 (31.82%), Postives = 197/396 (49.75%), Query Frame = 3
Query:   81 QLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVYKIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLH------------KVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQ-INSCQVRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTR 1229
            +L S R+L A+A    W +Y  DV  AFLNA     ++ + APG E+ D TT +  V  L++S+YGL QSP++WN  I++ +   G   T SDPCVY   S     +L+++VDDIL+TG    ++     + M  F  T++GEV  ++G+EV R+ + GTL +SQ  Y   IL R+ M   +   TP    + S     D LL     + +QA      +  S+  +    +   S  VH+ T   A   ++ + +    LL Y        I   +   R+               +   G+  F   GL+ + ++ Q + A +T EAEL  L+  A++ VY      E+G +   S  + SD+ GAL +A+N+  SSR+KH+A+RF  LR+  R
Sbjct: 1085 RLGSIRMLFAIACEHGWEVYQLDVVAAFLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQA------ITGSLLYLAQCTRYDLSYAVHQLTRACA-NPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRNSRR 1473          
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS)

HSP 1 Score: 178 bits (452), Expect = 4.590e-47
Identity = 131/444 (29.50%), Postives = 214/444 (48.20%), Query Frame = 3
Query:   60 EQFFTSMQLESERLLLALATAKDWIIYGRDVQVAFLNAKVQESIFCKQAPGFEKMDSTTAQPYVMSLKRSIYGLRQSPNVWNHTIDNEVRSMGSTPTISDPCVYSKGSNHT*IVLSLFVDDILVTGPTDRLLMDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDRFNMSS---VDLTKTPSIKTDPSAASNGDSLLDGAATEEYQ----------ANGRKSHLPDSVYKIRHLLQRHPSSTVHECTN-----PTALGGSKAYSSLFAGLL*YFDHLQ*NQIGTGRLL*RIVLHKVYNGHDIFSANGLVHFSSRLQKVTAISTTEAELIVLAACAKQGVYFLGICRELGLQINSCQ-VRSDNRGALHLAANSNCSSRSKHLAIRFSALRDWTRSKQLIIDHVSSSDQLADILTKHCERVIFTQLCSEI 1334
            E +   ++L++ RLL+A+A  ++ II+G DV  A+LN K+ ESI+  Q P +       A      LK  +YGL+QS  VWN  ++     +G T  +SD CVY +  +   I++++ VDD+ +  P D  + ++  +  KK    ++GE+  ILGM++ RN   GT+ LSQ  Y+L +L+R  M+    V +   P+++ +   A  GDS     AT +Y           ANG +  +  +V ++   +Q   +  V             L     Y      L+ Y D    +  G  R   R       +G+    A G V +SS+ Q   A+ST EAE + LA   ++ ++   +  ELGL  +    +  DN+ A+  A N    +RSKH+ IR   +R+   S ++ + H +S + LADI TK   R +   L + I
Sbjct:   64 ETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAH-----LKLMLYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGPIIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPA--GDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYGRTMDELIPYSD----SDWGEDRADRRST-----SGYVCTYAGGAVTWSSKKQPTVALSTMEAEYMALAHTTREVIWLRALLTELGLPPDGATTIFVDNQSAIKFAENPIFHARSKHIDIRHHFVRERMASNEVKVQHCASEENLADIFTKGLPRPLHEYLSAGI 491          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33440.8958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF46_9PHAE1.120e-5631.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE6.560e-5634.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE5.120e-5431.51Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.780e-5331.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.790e-5331.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE6.630e-5333.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR8_9PHAE3.660e-5131.36Integrase catalytic domain-containing protein n=11... [more]
A0A6H5K9R3_9PHAE4.840e-5032.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHG5_9PHAE1.070e-4831.82Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A284QR55_ARMOS4.590e-4729.50Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33440contigH-paniculata_contig33440:83..1416 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1334
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33440.8958.1prot_H-paniculata_contig33440.8958.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33440 538..951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.9946806-UTR-H-paniculata_contig33440:82..5371622930032.9946806-UTR-H-paniculata_contig33440:82..537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33440 83..537 +
1691481118.7014134-UTR-H-paniculata_contig33440:82..5371691481118.7014134-UTR-H-paniculata_contig33440:82..537Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33440 83..537 +
1622930033.02182-UTR-H-paniculata_contig33440:951..14161622930033.02182-UTR-H-paniculata_contig33440:951..1416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33440 952..1416 +
1691481118.7190037-UTR-H-paniculata_contig33440:951..14161691481118.7190037-UTR-H-paniculata_contig33440:951..1416Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33440 952..1416 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.0084383-CDS-H-paniculata_contig33440:537..9511622930033.0084383-CDS-H-paniculata_contig33440:537..951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33440 538..951 +
1691481118.7114959-CDS-H-paniculata_contig33440:537..9511691481118.7114959-CDS-H-paniculata_contig33440:537..951Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33440 538..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33440.8958.1

>prot_H-paniculata_contig33440.8958.1 ID=prot_H-paniculata_contig33440.8958.1|Name=mRNA_H-paniculata_contig33440.8958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MDVCYQFMKKFTTTNLGEVSLILGMEVLRNKQTGTLQLSQDKYVLSILDR
FNMSSVDLTKTPSIKTDPSAASNGDSLLDGAATEEYQANGRKSHLPDSVY
KIRHLLQRHPSSTVHECTNPTALGGSKAYSSLFAGLL*
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mRNA from alignment at H-paniculata_contig33440:83..1416+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33440.8958.1 ID=mRNA_H-paniculata_contig33440.8958.1|Name=mRNA_H-paniculata_contig33440.8958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1334bp|location=Sequence derived from alignment at H-paniculata_contig33440:83..1416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATTCAAGGCTCGACTCGTGGTACAAGGCTGGTCGCAAAAACACGGAAT AGACTGCGGGAGCAGTTTTTCACCAGTATGCAGCTGGAAAGCGAGAGACT GCTGCTCGCGCTTGCAACAGCAAAGGATTGGATAATCTACGGACGTGATG TTCAAGTTGCTTTTCTAAACGCCAAAGTGCAGGAAAGCATCTTCTGCAAA CAAGCACCTGGCTTCGAGAAGATGGACTCCACTACAGCACAACCGTACGT GATGAGTTTAAAGAGATCAATATATGGGTTGCGCCAAAGCCCAAATGTTT GGAACCATACCATCGACAACGAGGTGAGGAGCATGGGCTCTACACCGACC ATCTCGGATCCTTGTGTGTACAGTAAAGGAAGCAACCACACCTAAATTGT GCTCAGCCTTTTCGTCGACGACATCCTTGTTACAGGACCAACGGACAGAC TACTAATGGATGTTTGCTACCAATTCATGAAAAAGTTTACCACCACGAAC CTTGGGGAAGTATCGCTTATTCTTGGCATGGAGGTACTGCGCAACAAACA AACTGGCACCCTTCAGCTATCACAGGACAAGTACGTACTGTCCATTTTGG ACAGGTTCAACATGTCATCGGTAGATCTTACCAAGACGCCAAGTATTAAA ACGGACCCAAGCGCTGCTAGTAATGGTGACAGCCTACTGGATGGAGCAGC CACGGAGGAGTATCAAGCCAATGGTAGGAAGTCTCATCTTCCTGACTCAG TGTACAAGATTCGACATCTGCTTCAGCGTCATCCAAGCAGCACGGTTCAT GAGTGCACCAACCCAACAGCACTTGGTGGCAGTAAAGCGTATTCTTCGCT ATTTGCGGGGCTACTCTGATATTTCGATCACTTACAGTAGAATCAAATTG GAACTGGTCGGCTACTCTGACGCATCGTACTGCACAAGGTCTACAACGGG CACGATATTTTCTCTGCTAACGGATTGGTACACTTCTCGTCTCGACTTCA GAAGGTTACAGCTATAAGCACAACTGAGGCGGAACTCATCGTACTAGCCG CATGCGCTAAACAGGGTGTTTACTTTCTAGGGATCTGCAGAGAACTTGGG CTTCAGATCAACAGCTGTCAAGTCCGTAGTGACAACAGAGGCGCCCTCCA TCTCGCAGCAAATAGCAATTGCTCCAGCCGCAGCAAACATCTAGCCATCA GATTTTCAGCACTTCGTGACTGGACCAGGAGCAAGCAGCTCATCATTGAC CATGTATCAAGTTCAGACCAGCTAGCCGACATCCTCACTAAGCACTGTGA GAGAGTGATATTTACTCAGCTATGCAGCGAAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig33440:83..1416+

>mRNA_H-paniculata_contig33440.8958.1 ID=mRNA_H-paniculata_contig33440.8958.1|Name=mRNA_H-paniculata_contig33440.8958.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig33440:83..1416+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATGTTTGCTACCAATTCATGAAAAAGTTTACCACCACGAACCTTGG
GGAAGTATCGCTTATTCTTGGCATGGAGGTACTGCGCAACAAACAAACTG
GCACCCTTCAGCTATCACAGGACAAGTACGTACTGTCCATTTTGGACAGG
TTCAACATGTCATCGGTAGATCTTACCAAGACGCCAAGTATTAAAACGGA
CCCAAGCGCTGCTAGTAATGGTGACAGCCTACTGGATGGAGCAGCCACGG
AGGAGTATCAAGCCAATGGTAGGAAGTCTCATCTTCCTGACTCAGTGTAC
AAGATTCGACATCTGCTTCAGCGTCATCCAAGCAGCACGGTTCATGAGTG
CACCAACCCAACAGCACTTGGTGGCAGTAAAGCGTATTCTTCGCTATTTG
CGGGGCTACTCTGAATGGATGTTTGCTACCAATTCATGAAAAAGTTTACC
ACCACGAACCTTGGGGAAGTATCGCTTATTCTTGGCATGGAGGTACTGCG
CAACAAACAAACTGGCACCCTTCAGCTATCACAGGACAAGTACGTACTGT
CCATTTTGGACAGGTTCAACATGTCATCGGTAGATCTTACCAAGACGCCA
AGTATTAAAACGGACCCAAGCGCTGCTAGTAATGGTGACAGCCTACTGGA
TGGAGCAGCCACGGAGGAGTATCAAGCCAATGGTAGGAAGTCTCATCTTC
CTGACTCAGTGTACAAGATTCGACATCTGCTTCAGCGTCATCCAAGCAGC
ACGGTTCATGAGTGCACCAACCCAACAGCACTTGGTGGCAGTAAAGCGTA
TTCTTCGCTATTTGCGGGGCTACTCTGA
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