mRNA_H-paniculata_contig33415.8955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33415.8955.1
Unique NamemRNA_H-paniculata_contig33415.8955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33415.8955.1 vs. uniprot
Match: A0A151ITN2_9HYME (Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=471704 RepID=A0A151ITN2_9HYME)

HSP 1 Score: 53.5 bits (127), Expect = 5.330e-6
Identity = 27/101 (26.73%), Postives = 53/101 (52.48%), Query Frame = 1 
Query:   10 EIWIYDNGATKHMTHDSDFRFDYQC--NGHVRLADGNRLPIEGGGMLFLQFRFDSEVVLMKLTQVAFVPLPSHHLLPLGKFADFGHEYRCFREGLRIYLKT 306
            ++WI D+GA++HMTH S++  + Q   + HV L DG +  + G G +++Q   D + +   L  V +VP  + +L  +G   +  +        ++++L  
Sbjct:  286 DVWILDSGASRHMTHRSNWISNLQTYKDEHVSLGDGTKCKVHGRGTVYIQRLVDGQWLDGVLEDVLYVPDLNKNLFSVGACMNKNYRVVFTNNSVKLFLNN 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33415.8955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A151ITN2_9HYME5.330e-626.73Copia protein n=1 Tax=Trachymyrmex cornetzi TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33415contigH-paniculata_contig33415:175..492 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.8
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog3712.Bo3g019830.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size318
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.6111438-CDS-H-paniculata_contig33415:174..4861622930032.6111438-CDS-H-paniculata_contig33415:174..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33415 175..486 -
1691481118.509083-CDS-H-paniculata_contig33415:174..4861691481118.509083-CDS-H-paniculata_contig33415:174..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33415 175..486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.6336164-UTR-H-paniculata_contig33415:486..4921622930032.6336164-UTR-H-paniculata_contig33415:486..492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33415 487..492 -
1691481118.51994-UTR-H-paniculata_contig33415:486..4921691481118.51994-UTR-H-paniculata_contig33415:486..492Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33415 487..492 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33415.8955.1prot_H-paniculata_contig33415.8955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33415 175..486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33415.8955.1

>prot_H-paniculata_contig33415.8955.1 ID=prot_H-paniculata_contig33415.8955.1|Name=mRNA_H-paniculata_contig33415.8955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MEIWIYDNGATKHMTHDSDFRFDYQCNGHVRLADGNRLPIEGGGMLFLQF
RFDSEVVLMKLTQVAFVPLPSHHLLPLGKFADFGHEYRCFREGLRIYLKT
GRVL
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mRNA from alignment at H-paniculata_contig33415:175..492-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33415.8955.1 ID=mRNA_H-paniculata_contig33415.8955.1|Name=mRNA_H-paniculata_contig33415.8955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=318bp|location=Sequence derived from alignment at H-paniculata_contig33415:175..492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGATGGAGATCTGGATATATGATAATGGTGCAACGAAACACATGAC
CCATGATTCAGATTTTCGTTTTGACTACCAATGTAATGGGCATGTACGCC
TTGCAGATGGCAACCGTCTCCCGATCGAAGGAGGTGGCATGCTGTTCCTT
CAATTTCGATTTGACTCCGAGGTTGTATTGATGAAATTAACTCAGGTTGC
ATTCGTACCACTCCCCAGTCATCACCTCCTACCTCTCGGGAAATTCGCGG
ACTTTGGTCATGAATATAGGTGTTTCCGCGAAGGGCTCAGAATTTACCTT
AAAACAGGCAGAGTTCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig33415:175..492-

>mRNA_H-paniculata_contig33415.8955.1 ID=mRNA_H-paniculata_contig33415.8955.1|Name=mRNA_H-paniculata_contig33415.8955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig33415:175..492- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATCTGGATATATGATAATGGTGCAACGAAACACATGACCCATGA
TTCAGATTTTCGTTTTGACTACCAATGTAATGGGCATGTACGCCTTGCAG
ATGGCAACCGTCTCCCGATCGAAGGAGGTGGCATGCTGTTCCTTCAATTT
CGATTTGACTCCGAGGTTGTATTGATGAAATTAACTCAGGTTGCATTCGT
ACCACTCCCCAGTCATCACCTCCTACCTCTCGGGAAATTCGCGGACTTTG
GTCATGAATATAGGTGTTTCCGCGAAGGGCTCAGAATTTACCTTAAAACA
GGCAGAGTTCTGATGGAGATCTGGATATATGATAATGGTGCAACGAAACA
CATGACCCATGATTCAGATTTTCGTTTTGACTACCAATGTAATGGGCATG
TACGCCTTGCAGATGGCAACCGTCTCCCGATCGAAGGAGGTGGCATGCTG
TTCCTTCAATTTCGATTTGACTCCGAGGTTGTATTGATGAAATTAACTCA
GGTTGCATTCGTACCACTCCCCAGTCATCACCTCCTACCTCTCGGGAAAT
TCGCGGACTTTGGTCATGAATATAGGTGTTTCCGCGAAGGGCTCAGAATT
TACCTTAAAACAGGCAGAGTTCTG
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