mRNA_H-paniculata_contig334.8950.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig334.8950.1
Unique NamemRNA_H-paniculata_contig334.8950.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A6H5K301_9PHAE (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K301_9PHAE)

HSP 1 Score: 194 bits (492), Expect = 7.770e-56
Identity = 143/275 (52.00%), Postives = 167/275 (60.73%), Query Frame = 2 
Query:   89 ILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKA-----ANNLSKRFEARFAKLMAPPKEPGTSVTGGGSXXXXXXXXXXXXXXXXXXXXXASNRAGKRAAAEMVPAPTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAALV------------------------ANGDA-----------------------IDVDMDALDAWTFATVEQLISPASYSRRLLR 757
            ++DSLL S DSEAFREPVDW  LGL DY ++I RPMDLGTV+ ++ +GAY T   CAADVRLIWDNCR YNTGGVPR LHKA     A+ LSKRFE R AK++A  + P +S  GG  XXXXXXXXXXXXXXXXXXXXX         AA+    PT ++RRRLAR LG ARMEDVTAA+H ID GCP ALV                        + G                         I+VD+DALDAWTF  VE++++P    RR  R
Sbjct:   26 LIDSLLGSADSEAFREPVDWRGLGLHDYPNLIKRPMDLGTVKLRLERGAYPTAEACAADVRLIWDNCRTYNTGGVPRDLHKASEKLAADTLSKRFETRLAKILAGGR-PKSSSRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVAAD----PTTEDRRRLARHLGRARMEDVTAAVHEIDRGCPEALVRRRAGHQIKREEGEKAAEETEKGRSTGGGCXXXXXXGNDCVEALVGRTAAVEIEVDVDALDAWTFCAVERVVAPHVALRRASR 295
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S3PZ05_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZ05_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.280e-29
Identity = 77/241 (31.95%), Postives = 124/241 (51.45%), Query Frame = 2 
Query:   80 MDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKLMAPPKEPGTSVTGGGSXXXXXXXXXXXXXXXXXXXXXASNRAGKRAAAEMVPAPTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAALVANG--DAIDVDMDALDAWTFATVEQLISPASYSRRLLRTKERSGGRKNNRV 796
            M K++  + + G+SE FR+ VDWE LGL DY  ++ RPMDLG +++KI +  Y++ ++ A DVRL+W NC+ YN  G     +  A+ LS +FE +FAKL+   KE G     G S                      +  AG   A E    P+ ++++  A++L     ED+   I  +D  CP A+  N   D +++++D +DA +F+ V Q ++    +    R K+ S   KN + 
Sbjct:    9 MGKLVQQIYSKGESEPFRDAVDWESLGLYDYPQIVKRPMDLGQIKRKIEKEEYASVNDAANDVRLVWQNCKTYNADGSD--FYNLADTLSTKFEDKFAKLL---KELGLEAADGKS---------------------GAGGAGTSEAKE----PSLEDKKLFAKRLYKISKEDLGKVIIELDSICPQAITKNSAEDQVEINVDNIDAESFSKVMQFVATCVGADGGTRRKKSSVNTKNKKA 219
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S2UQ34_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQ34_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.650e-29
Identity = 75/222 (33.78%), Postives = 107/222 (48.20%), Query Frame = 2 
Query:   77 EMDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKLMAPPKEPGTSVTGGGSXXXXXXXXXXXXXXXXXXXXXASNRAGKRAAAEMVPAPTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAALVANG--DAIDVDMDALDAWTFATVEQLISPAS 736
            E+ K+L  + A  D+E FREPV+W+ LGL DY  VI RPMDLG +++ + +  YST HE AAD++L+W NC  YN  G     +K A  LS  FEARFAK+         +  GGG                       +N             PT +E+R   + L     E++   I  +D  CPAAL  N   D I++++D +    F  V+  ++  S
Sbjct:    9 EIAKVLAQMYAKPDAEPFREPVEWKALGLFDYPQVIKRPMDLGHIKRNLEKNKYSTVHEVAADIKLVWKNCMTYNADGSD--FYKLAKKLSNSFEARFAKI---------AKDGGGDD--------------------TANGXXXXXXXXXSSEPTLEEKRTFVKGLYKISKEELGKVITELDTKCPAALSKNNAEDEIEINVDNITPLVFHEVKGFVASCS 199
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S2EKB9_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EKB9_TRICV)

HSP 1 Score: 112 bits (280), Expect = 3.600e-27
Identity = 53/107 (49.53%), Postives = 69/107 (64.49%), Query Frame = 2 
Query:   59 SSTLIFEMDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKL 379
            S   +  M KI++S+LA GDS  FREPVDW  L L DY  +I + MDLGTV++K+ +G Y T HECA D+RLIW NC+ YN  G        A + S+RFE R+ K+
Sbjct:   22 SDEALRRMTKIVNSILARGDSGPFREPVDWRGLELYDYPKIIKKMMDLGTVKRKLERGQYQTAHECAEDIRLIWTNCKTYNADGSD--FFLLAESFSRRFEERYKKV 126
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S2PE54_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PE54_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.450e-26
Identity = 74/223 (33.18%), Postives = 112/223 (50.22%), Query Frame = 2 
Query:   77 EMDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKLMAPPKEPGTSVTGGGSXXXXXXXXXXXXXXXXXXXXXASNRAGKRAAAEMVP--APTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAALVA--NG---DAIDVDMDALDAWTFATVEQLI 724
            +M K++ S++   D+  FREPV+W  L L DY  +I RPMDLGTV++K+    Y T +ECA D+RLIW NC  YN  G     +  A  LS++FE RF K+ A     G +     S                     A N +G  A  +M     PT +E+ + A  +     + +   + +ID+ CP A+    NG   D +++++D LD  TFA +++ I
Sbjct:   16 KMSKLVSSMMTKSDTAPFREPVNWRELELWDYPKIIKRPMDLGTVKRKLESTQYETANECAEDIRLIWSNCMTYNQEGSD--FYLLAQALSRKFEDRFRKVRAEYDVGGDAYDNTKSKSDGKGGS-------------AENGSGSAAGGKMGDHKPPTLEEKTQFAGNIFKIGGDALGYVMQVIDLRCPQAIERGNNGAAEDELEINVDTLDPRTFAELDRFI 223
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S2UZN8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZN8_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.050e-26
Identity = 49/101 (48.51%), Postives = 69/101 (68.32%), Query Frame = 2 
Query:   77 EMDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKL 379
            +M KI+  L+   D+  FREPVDW  L + DY  ++ RPMDLGT++KK+  G Y TP ECAAD+RL+W+NC +YN  G     ++ A  LSK+FE ++AK+
Sbjct:   43 QMKKIVSYLMTRQDAVPFREPVDWRQLQIFDYPQIVKRPMDLGTIKKKLENGEYRTPAECAADIRLVWENCMIYNQDGSD--YYRLAEKLSKKFEDKYAKV 141
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S3JU45_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JU45_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.780e-26
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 2 
Query:   80 MDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKLMA 385
            M KI+D L+   D+  F EPVDW+ LGL DY  +I +PMDLGTV+KKI +  Y++ H CA D+RL+W NC+ YN  G        A +LSKRFE +FAK+ A
Sbjct:    4 MKKIVDKLMKRQDAVPFLEPVDWQGLGLVDYPKMIKKPMDLGTVKKKIEENEYASVHACAEDIRLVWSNCKKYNQDGSD--FFNLAESLSKRFEDQFAKVKA 103
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7R9VVT0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVT0_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.070e-25
Identity = 72/210 (34.29%), Postives = 100/210 (47.62%), Query Frame = 2 
Query:   80 MDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKLMAPPKEPGTSVTGGGSXXXXXXXXXXXXXXXXXXXXXASNRAGKRAAAEMVPAPTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAALVANG--DAIDVDMDALDAWTF 703
            M K++  + A  D+E FREPVDW+ LGL DY  +I +PMDLG V++KI  G Y   H+ A DVRLIW NC  YN  G        A N+SK+FE +FAKL                                     A+N  GK  ++E    PT +E+R  A+ L     E++   I  +D  C  AL  N   D +++++D +    F
Sbjct:   11 MAKLVAQIYAKSDAEPFREPVDWKSLGLFDYPQIIKKPMDLGQVKRKIETGKYGAIHDAAEDVRLIWKNCMQYNADGSD--FFILAQNMSKKFEDKFAKLQKD-----------------------------LDSKSAAN--GKGNSSE----PTLEEKRTFAKLLYKISKEELGKVIVDLDAKCSTALTKNSAEDEVEINVDHISPTVF 183
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A5D6Y7F4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7F4_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.610e-24
Identity = 69/214 (32.24%), Postives = 105/214 (49.07%), Query Frame = 2 
Query:   86 KILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKLMAPPKEPGTSVTGGGSXXXXXXXXXXXXXXXXXXXXXASNRAGKRAAAEMVPAPTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAAL-VANGDAIDVDMDALDAWTFATVEQLI 724
            +IL+ +     +EAFRE V+WE  GL DY  V+  PMDLGT+R K+ +  Y  P E A DVRL+WDNC+LYN  G    L+  A +LSKRFE R   +                                     A+ RA K      +P PT +E+   ++ +     +D+   +  ++  CP AL  ++ D +D+ +D++DA TF  +E+ +
Sbjct:   11 EILEYIFRLDTAEAFRERVNWEEWGLYDYLQVVKVPMDLGTIRAKLAKNEYKKPAEFAKDVRLVWDNCKLYNQDGSD--LYDVAEDLSKRFEDRVKSVKLD--------------------------------VGAAPRADK-----SIPVPTAEEKIYFSQNIYKITSKDLGQVVAALEEKCPKALDKSSPDELDIVIDSIDAKTFRELEKFV 185
[Close]
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Match: A0A7S0BZA1_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZA1_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.910e-24
Identity = 52/98 (53.06%), Postives = 64/98 (65.31%), Query Frame = 2 
Query:   80 MDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQGAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFA 373
            M K+++SLLA  D   FREPVDW  L L DY  VI + MDLGTV++K+ +G YSTP ECA D+RL+W NC+ YN  G        A + SKRFE R A
Sbjct:   48 MAKLVNSLLARVDCGPFREPVDWRGLELWDYPKVIKKMMDLGTVKRKLERGQYSTPAECAVDIRLVWTNCKTYNADGSD--FFLLAESFSKRFEDRQA 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig334.8950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K301_9PHAE7.770e-5652.00Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A7S3PZ05_9STRA1.280e-2931.95Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2UQ34_9STRA1.650e-2933.78Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2EKB9_TRICV3.600e-2749.53Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2PE54_9STRA1.450e-2633.18Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2UZN8_9STRA3.050e-2648.51Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3JU45_9STRA4.780e-2650.98Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7R9VVT0_9STRA2.070e-2534.29Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A5D6Y7F4_9STRA1.610e-2432.24Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A7S0BZA1_9STRA3.910e-2453.06Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig334contigH-paniculata_contig334:1986..6556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.7
Seed ortholog evalue3.5e-48
Seed eggNOG ortholog2880.D8LBQ8
KEGG koko:K11724
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acetylation-dependent protein binding
EggNOG OGsCOG5076@1,KOG1474@2759
Ec32 ortholog descriptionBromodomain protein
Ec32 orthologEc-27_003080.1
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03036
Exons3
Model size922
Cds size843
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig334.8950.1prot_H-paniculata_contig334.8950.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig334 2065..6556 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.1745474-UTR-H-paniculata_contig334:1985..20641622930032.1745474-UTR-H-paniculata_contig334:1985..2064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig334 1986..2064 +
1691481118.2973247-UTR-H-paniculata_contig334:1985..20641691481118.2973247-UTR-H-paniculata_contig334:1985..2064Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig334 1986..2064 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.193544-CDS-H-paniculata_contig334:2064..20731622930032.193544-CDS-H-paniculata_contig334:2064..2073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig334 2065..2073 +
1691481118.3107033-CDS-H-paniculata_contig334:2064..20731691481118.3107033-CDS-H-paniculata_contig334:2064..2073Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig334 2065..2073 +
1622930032.2075555-CDS-H-paniculata_contig334:4941..51841622930032.2075555-CDS-H-paniculata_contig334:4941..5184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig334 4942..5184 +
1691481118.3289518-CDS-H-paniculata_contig334:4941..51841691481118.3289518-CDS-H-paniculata_contig334:4941..5184Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig334 4942..5184 +
1622930032.2238111-CDS-H-paniculata_contig334:5965..65561622930032.2238111-CDS-H-paniculata_contig334:5965..6556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig334 5966..6556 +
1691481118.344756-CDS-H-paniculata_contig334:5965..65561691481118.344756-CDS-H-paniculata_contig334:5965..6556Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig334 5966..6556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig334.8950.1

>prot_H-paniculata_contig334.8950.1 ID=prot_H-paniculata_contig334.8950.1|Name=mRNA_H-paniculata_contig334.8950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=281bp
MDKILDSLLASGDSEAFREPVDWECLGLTDYQSVITRPMDLGTVRKKIRQ
GAYSTPHECAADVRLIWDNCRLYNTGGVPRRLHKAANNLSKRFEARFAKL
MAPPKEPGTSVTGGGSGSAGSKRKRDGGGTGGPGSATASNRAGKRAAAEM
VPAPTDDERRRLARQLGCARMEDVTAAIHLIDVGCPAALVANGDAIDVDM
DALDAWTFATVEQLISPASYSRRLLRTKERSGGRKNNRVNGGGSSGGSSG
SSGSSGSSGSSGGGEDDSGEKGGVGGATAGG
back to top

mRNA from alignment at H-paniculata_contig334:1986..6556+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig334.8950.1 ID=mRNA_H-paniculata_contig334.8950.1|Name=mRNA_H-paniculata_contig334.8950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4571bp|location=Sequence derived from alignment at H-paniculata_contig334:1986..6556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTGTTGACGCTGCGCTCTGACTTGAGTTGGAGAACAACCTGCCCCGC
GTAGTGGCTCTTCAACTCTTATTTTCGAGATGGATAAAGTGAGTTGCCAC
CACCTTGCCTTCTTGCACAGCTGTATGCTTTCATATTCAAGCAGAAGCTG
TAGGCTGCCACACCTTAGTGCTCTCTCTTGAGTAATATATTGTTGGTTGT
CCCTGATGAACACCTCGAACGGTCCGGTATGCACAGTACAACAGTAAAGC
GTAGTAGTAAACTCTGTCTCAGTCGCTGTGGTATAGTACAGTACAGTACA
GTACAGTAGCCGAACTGTACTATACAATGCACTCTGCTTCATGATGCGTT
TCTACAGTGAGTTCGCAATCACAGAACGCTGTTTGCATATCGTGCCTTTC
TCCTCAACCGCTTATCACCTTGGCTCTGTTAGTTGTGGGGACTTCGAGCT
CAAACTTCCTTATTACTAGTAAGTTGTCAGAGTTGGTACCTGTAGTAGTA
TAAAAGTGGAAACCTTCCCCTTCCTCGCTGCGTTAGTTCCTTGTTCCGCA
CCTCTTCCACCTGGTCAATTCGTAAACATGACGAGATTACTTGATCTAAA
TTAACTTCGTTGGTGTACTGGCGTCCTGCCCCAATTACAGTACGTCGAAT
CAGCTGCACGGTTTTCATTGACCTCACCGCGAAGAGTTGAACAGGGGCGG
CACTTCTTATTGCGTATTACATTGCTTATATGAGCTGTCTGTCTTAATTT
GCTGTCTGTCGTGGGAATACTGTGCCCAAGTCACATATCGATGCTCCAAA
TCTCTTTCACCACAGTGTGAAGTCCGACAGCCGAGTGTTGGAAGGTTTGA
GATTATTATTACGCTTTAGTTTAGCGTTCATAAATGCCAACGACAGAAAC
GAAAACCTGCTGCGGCAACTATTGGTGAATATATTTTCCGGCTGCATGTA
CCAGCAGCACCCAAGTGGTGTGGCGTTCGGATGGTGATATTCCCCAACTT
CGTATGTCCAGCTATTTACACTAGTACGGAGAGTATCTCGAATACCGCCA
ACAACTACTTCACTCATGATTACTCTTTTGCCCTGTCTTCCACACAGTAA
AAAACTCCCGGGAACTCCTGTCAATTCGTTTGAAACTTGGTGTGTGTGTA
TATAAAAGGCGGCCTAAGAATGCTGATGACTTGCGTATTGGATAACTCGT
CGCCGTTTCGAAGGTTACGCCTAAAATATTTTTGGCTGAAATCCCGACAT
ATCTACCTCGAAATTGTTCCGATATAGATATTGTTGTTTCTCCTTGAAAA
CGCCGGAACAACCATCTCTGCTACTAGGTTTCATAAGTCCGATGTAGATA
TTTGGCGGGGGGGGGGGTTGCATATTTCCCACATTTTTCTCGGATATTGG
AGGGAACAAAACGTTGTTGTGGGTGCTAAATGTAGCACAAAAATGGTGTA
CATTTTCCAATCTACCTCAACCCCCAGGTCAATTTCAATTTCCTAATATC
TTCATCGTCAAGTGCCAGGGTTTAAAAGCCTGCCTCTCTATCGCATCGTC
AATTTTCAATTTTCCCCCAAGTCCCTCATGTACATTTGCTCTCTTTCTCA
CATAGAGGAGGCATTCTCCCATCATGTGAATTCGGTTCTCACTGTACTAT
ATTATCACAGTCACACTTGAACATCGCATCGTCGTTCTTTGTCTACTTTC
CACACGTCATCTACCACGGTAACCCACTTAATGGGTCCTCTACTCCTCTG
CACTGTTATCCACTCTGCCTTTCTTGCCATTTTTAGTGGTCTATTTCCTT
CCCTTTTCTGCAGTCCGTGTTGCCATCTCAGCTTTCCTACGTCTCTTCTG
GTTTCAGGGAGTATATGCCCAAACCTCCCCCTTGGTGCTGCATTGCTGAT
ACGCTGCGAACACCCGGAAATCACCTTCGTTGCTTTGATCTGAATTACTG
CCAACTTCTTGGCTGTATTCTGATTTCCTTTCTACACCTCCCTTGCATAT
TCTAGCGGCAGAATCATGAAGCTTGGTCCATTTTTTGGTTTGATACGTCT
GTCAAGACCCTGGTCGGCAAGTATCAACCGCAATTTTCTTACTCGATCTT
CCCCTTTTATCGGTTACTTTTTTCATGTGTATATATATATATCCCACTTG
AGTCCTTCCAGAACCCAGCGCCAACACATGTGTACTAATCCACCGTTGGT
GCTCATTTTTGTCTCCCATTTCCACTTAAGATCCGCTGTCGTCGCGTACC
GGTACGGCAAACTCTTCCACAGTTCCTGACACTCCACTTCCAAACAAGTT
CCATCGCTGCGTCAATCTGCTTGTGCAGCCCCTGCGGGGTAGCAGATACC
CTGCCCCCCCCCCCCCCCCCCCCCCCCGAAGCCATCCGCAAACAGAATAA
TTGAGCTCCCTCACCTCCTTCACTTTGTACGACTTGTCCTATTGCCTCAC
TACTTTACGTATACCGTTGATCAACACCTGGAACAGTGTTAGACATGGCG
TACATCACAAGCCTTGTGGGACCTCTTGCAGGATGTTTTTTAAGATTCAG
ACAATTTCCCATCGTACGGATTCATCGATGGAGAAACGTGCATTCGGATC
TCATCGTGGCGGTTCGCACGGATCCGTTGTTCACAATGATATATATCCTT
ACGAAACTTACACACATACGGGACGAATCAGCTATACCAATAAAACAACA
ACTATATGCATGGATATTTATTACACATGGGTCATATGAATCCTTGTGTT
TTCAAGAAATATATACACGGATTATAAAAACATAACAGAGGACGGATCTT
GAGATCTATCTCTACATATATAGATGATCGATACGAGCGCCGTGAACAAT
CTGATCGGTTTGATTGATCGTTTATAAAACATTTTGGAGTGTACAAACGA
CACTGTAAACGTTTTTTGCCCACCGCTTGCTGTCATGTTCGTTTTTTCTG
TCCCAGATTCTGGACTCTCTGTTGGCATCCGGCGATTCCGAAGCCTTTCG
GGAACCGGTGGATTGGGAGTGTCTGGGCTTAACTGACTACCAGTCCGTCA
TCACGCGACCAATGGACTTGGGCACGGTCAGGAAGAAGATCAGGCAAGGG
GCGTACAGCACGCCGCACGAGTGCGCGGCAGATGTTCGCTTGATCTGGGA
CAACTGTCGGCTGTACAACACCGGCGGAGTGCCTCGTCGGCTTCACAAGG
TTGGTTAGTTGGTTGAATGGTTGGTATTAATAGTCAATGATAATGAAGTG
ATATCTCGTGAAGAGCGACAAAAGCAAGAGAATGTTTTGCTGTCCAGTCG
GTTTACATGCTCTTTTTTTCTGTGTGAGAACAAGGGGCGACAAAACCTCC
GTTGATCATTGTTGGCAAAAATAGTGTGATGCCACATTACCAAGCTCCTG
TTTTTGGTTTTGATGTTCTTGGTCTTGTCGGGGCTTCTGGTTTGTACTTG
TGTTAATAATGGCATGCGTGCAGGTATTGTATAGTATAGTATAGTGTAGT
GTGATGTGGTGATGTTGCTGGGTTGGGGTGTAGTGTTCTTTTGAATTCTT
GCGTGCACTATATTTCATATGTAAATGCGGCAAAAAAAAATAACTTGCCT
GCTAATCCTTTTCTTTTCTTTTTTTGTCGTTGCTATAGGTGTCAGTAAGC
TATGTACACAACTGACGTATGACGCCAGCTACACAACCTCAACATGGATA
TAGTAGAGTTATATTATATGAGTGTTAGAGCTTAGTTCTACCAACTGTGG
CAAGTGGGCTGACTTAGGAATGAGAGGTCCAGTGATTGAAAGGTGGGGGG
TTATTTCAGGGGTGTCGTTCTTCCCCTCCTCTCCCTGTCTTTCCCTTTGT
TGGACTTCAAACGCCTAAATAGCCGTGACTGTGAGCTAAAGGTAATTAAC
TTTCTGTATAAAACGCATTTATGACTCGCCCCTCTTCTCCCACCCGGCGA
CCATACCCCAACTAAAAAAAACCAACGCAGGCCGCAAACAATCTGAGCAA
GAGATTCGAGGCGCGTTTCGCCAAGCTCATGGCGCCCCCCAAAGAACCGG
GAACATCAGTGACGGGGGGAGGGAGTGGCAGCGCGGGCAGCAAGCGCAAG
CGTGACGGCGGCGGAACCGGCGGCCCCGGGAGTGCAACGGCGTCCAACAG
GGCCGGCAAGCGAGCGGCGGCAGAGATGGTTCCGGCGCCGACGGATGACG
AGCGCCGTCGGCTGGCCCGGCAGCTGGGGTGCGCACGGATGGAAGACGTG
ACGGCCGCAATTCACCTGATCGACGTCGGGTGTCCCGCCGCCCTCGTGGC
CAACGGAGATGCCATCGACGTGGATATGGATGCGTTGGATGCGTGGACGT
TCGCGACGGTGGAGCAGCTGATTTCCCCGGCGTCTTATTCACGAAGATTA
TTGCGAACGAAGGAGCGAAGCGGCGGCCGGAAAAATAATCGGGTGAATGG
TGGTGGTAGTAGTGGCGGTAGTAGTGGTAGTAGTGGTAGTAGTGGCAGTA
GTGGCAGTAGTGGTGGTGGTGAGGATGATAGTGGTGAGAAAGGAGGGGTG
GGGGGGGCGACCGCTGGAGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig334:1986..6556+

>mRNA_H-paniculata_contig334.8950.1 ID=mRNA_H-paniculata_contig334.8950.1|Name=mRNA_H-paniculata_contig334.8950.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at H-paniculata_contig334:1986..6556+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATAAAATGGATAAAATTCTGGACTCTCTGTTGGCATCCGGCGATTC
CGAAGCCTTTCGGGAACCGGTGGATTGGGAGTGTCTGGGCTTAACTGACT
ACCAGTCCGTCATCACGCGACCAATGGACTTGGGCACGGTCAGGAAGAAG
ATCAGGCAAGGGGCGTACAGCACGCCGCACGAGTGCGCGGCAGATGTTCG
CTTGATCTGGGACAACTGTCGGCTGTACAACACCGGCGGAGTGCCTCGTC
GGCTTCACAAGATTCTGGACTCTCTGTTGGCATCCGGCGATTCCGAAGCC
TTTCGGGAACCGGTGGATTGGGAGTGTCTGGGCTTAACTGACTACCAGTC
CGTCATCACGCGACCAATGGACTTGGGCACGGTCAGGAAGAAGATCAGGC
AAGGGGCGTACAGCACGCCGCACGAGTGCGCGGCAGATGTTCGCTTGATC
TGGGACAACTGTCGGCTGTACAACACCGGCGGAGTGCCTCGTCGGCTTCA
CAAGGCCGCAAACAATCTGAGCAAGAGATTCGAGGCGCGTTTCGCCAAGC
TCATGGCGCCCCCCAAAGAACCGGGAACATCAGTGACGGGGGGAGGGAGT
GGCAGCGCGGGCAGCAAGCGCAAGCGTGACGGCGGCGGAACCGGCGGCCC
CGGGAGTGCAACGGCGTCCAACAGGGCCGGCAAGCGAGCGGCGGCAGAGA
TGGTTCCGGCGCCGACGGATGACGAGCGCCGTCGGCTGGCCCGGCAGCTG
GGGTGCGCACGGATGGAAGACGTGACGGCCGCAATTCACCTGATCGACGT
CGGGTGTCCCGCCGCCCTCGTGGCCAACGGAGATGCCATCGACGTGGATA
TGGATGCGTTGGATGCGTGGACGTTCGCGACGGTGGAGCAGCTGATTTCC
CCGGCGTCTTATTCACGAAGATTATTGCGAACGAAGGAGCGAAGCGGCGG
CCGGAAAAATAATCGGGTGAATGGTGGTGGTAGTAGTGGCGGTAGTAGTG
GTAGTAGTGGTAGTAGTGGCAGTAGTGGCAGTAGTGGTGGTGGTGAGGAT
GATAGTGGTGAGAAAGGAGGGGTGGGGGGGGCGACCGCTGGAGGAGCCGC
AAACAATCTGAGCAAGAGATTCGAGGCGCGTTTCGCCAAGCTCATGGCGC
CCCCCAAAGAACCGGGAACATCAGTGACGGGGGGAGGGAGTGGCAGCGCG
GGCAGCAAGCGCAAGCGTGACGGCGGCGGAACCGGCGGCCCCGGGAGTGC
AACGGCGTCCAACAGGGCCGGCAAGCGAGCGGCGGCAGAGATGGTTCCGG
CGCCGACGGATGACGAGCGCCGTCGGCTGGCCCGGCAGCTGGGGTGCGCA
CGGATGGAAGACGTGACGGCCGCAATTCACCTGATCGACGTCGGGTGTCC
CGCCGCCCTCGTGGCCAACGGAGATGCCATCGACGTGGATATGGATGCGT
TGGATGCGTGGACGTTCGCGACGGTGGAGCAGCTGATTTCCCCGGCGTCT
TATTCACGAAGATTATTGCGAACGAAGGAGCGAAGCGGCGGCCGGAAAAA
TAATCGGGTGAATGGTGGTGGTAGTAGTGGCGGTAGTAGTGGTAGTAGTG
GTAGTAGTGGCAGTAGTGGCAGTAGTGGTGGTGGTGAGGATGATAGTGGT
GAGAAAGGAGGGGTGGGGGGGGCGACCGCTGGAGGA
back to top