mRNA_H-paniculata_contig33326.8935.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A453SJJ3_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453SJJ3_AEGTS) HSP 1 Score: 68.6 bits (166), Expect = 3.100e-12 Identity = 32/54 (59.26%), Postives = 40/54 (74.07%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H RTKHI R+H IRE +++G V+ Y+ TG+QLADI+TK L RVKFQ LR L
Sbjct: 270 HDRTKHIETRFHFIRECVQDGRIVVDYIHTGEQLADIMTKALPRVKFQELREKL 323
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: UPI001E1CA6F9 (LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=UPI001E1CA6F9) HSP 1 Score: 67.0 bits (162), Expect = 1.400e-11 Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H RTKHI R+H IRE +++G + Y+ TG+QLADI+TK L RVKFQ LR L
Sbjct: 1371 HDRTKHIETRFHFIRECVQDGRIAVDYIHTGEQLADIMTKALPRVKFQELREKL 1424
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A453LP72_AEGTS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LP72_AEGTS) HSP 1 Score: 66.2 bits (160), Expect = 2.600e-11 Identity = 32/54 (59.26%), Postives = 41/54 (75.93%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H R+KHI VR+H IRE + EG +++V+TGDQLADILTK L+RVKF LR +
Sbjct: 482 HDRSKHIDVRYHFIRECVEEGRVTVEHVRTGDQLADILTKPLARVKFLELRERI 535
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: UPI001E1BA65C (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BA65C) HSP 1 Score: 64.7 bits (156), Expect = 2.750e-11 Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H RTKHI VR+H IRE +GV KYV T +QLADILTK L+ +FQRLR L
Sbjct: 147 HQRTKHIDVRYHFIRELQEQGVIDAKYVNTNEQLADILTKPLAAPRFQRLRQEL 200
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A2K3K827_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3K827_TRIPR) HSP 1 Score: 61.2 bits (147), Expect = 5.890e-11 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H RTKHI +R H IR+ + EGV L+++ T +QLADI TK L V+F++LR L
Sbjct: 28 HSRTKHIDIRHHFIRDLVEEGVVKLEHIATEEQLADIFTKALDAVQFEKLRGKL 81
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A7H4LHQ9_WHEAT (Genome assembly, chromosome: II n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A7H4LHQ9_WHEAT) HSP 1 Score: 64.7 bits (156), Expect = 8.020e-11 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H R+KHI +R+H IRE + EG + YV T DQLADILTK L R+KFQ +R +
Sbjct: 285 HNRSKHIDIRYHYIRECVEEGKVEVDYVSTKDQLADILTKSLGRLKFQEMREKI 338
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A409WC63_9AGAR (Uncharacterized protein n=2 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WC63_9AGAR) HSP 1 Score: 63.5 bits (153), Expect = 2.330e-10 Identity = 30/54 (55.56%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H RTKHI V++H R+ IR G+ L+YVQT DQ+ADI TK L RVK ++ R L
Sbjct: 1214 HMRTKHIDVQFHYTRQVIRRGIVKLEYVQTEDQVADIFTKALGRVKLEKFRGML 1267
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A6V7M3Q4_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7M3Q4_9HYME) HSP 1 Score: 60.5 bits (145), Expect = 4.360e-10 Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H +TKHI +++H IR+ I +G+ +LKYV TG QL D LTK L +KF LR +
Sbjct: 92 HKKTKHIDIKYHIIRKQIEKGLIILKYVPTGKQLTDALTKSLPAIKFVELRGQM 145
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A061ED65_THECC (Uncharacterized protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061ED65_THECC) HSP 1 Score: 60.1 bits (144), Expect = 4.470e-10 Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSL 162
H RTKHI V++H +R+ ++ LKY T DQLADI TKGLSR +F+ LR+ L
Sbjct: 65 HGRTKHIQVKFHALRDAMKNNEVDLKYCSTEDQLADIFTKGLSRERFEFLRSGL 118
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Match: A0A5E8C5Q4_9ASCO (Uncharacterized protein n=1 Tax=Saprochaete ingens TaxID=2606893 RepID=A0A5E8C5Q4_9ASCO) HSP 1 Score: 62.4 bits (150), Expect = 5.980e-10 Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 1 HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLRNSLM 165
H RTKHI VR+H +R +IR GV L+Y+ T LAD+ TK L RVKF+ LR+ L+
Sbjct: 1706 HRRTKHIDVRYHVVRHYIRSGVIHLEYLDTQVMLADMFTKNLGRVKFETLRDYLV 1760 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33326.8935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33326.8935.1 >prot_H-paniculata_contig33326.8935.1 ID=prot_H-paniculata_contig33326.8935.1|Name=mRNA_H-paniculata_contig33326.8935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp HCRTKHIGVRWHGIREWIREGVFVLKYVQTGDQLADILTKGLSRVKFQRLback to top mRNA from alignment at H-paniculata_contig33326:1945..2112- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33326.8935.1 ID=mRNA_H-paniculata_contig33326.8935.1|Name=mRNA_H-paniculata_contig33326.8935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at H-paniculata_contig33326:1945..2112- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33326:1945..2112- >mRNA_H-paniculata_contig33326.8935.1 ID=mRNA_H-paniculata_contig33326.8935.1|Name=mRNA_H-paniculata_contig33326.8935.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig33326:1945..2112- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |