mRNA_H-paniculata_contig33313.8933.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33313.8933.1
Unique NamemRNA_H-paniculata_contig33313.8933.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33313.8933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33313contigH-paniculata_contig33313:613..1578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33313.8933.1prot_H-paniculata_contig33313.8933.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33313 622..1578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.5462317-UTR-H-paniculata_contig33313:612..6211622930029.5462317-UTR-H-paniculata_contig33313:612..621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33313 613..621 +
1691481117.1387458-UTR-H-paniculata_contig33313:612..6211691481117.1387458-UTR-H-paniculata_contig33313:612..621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33313 613..621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.5577805-CDS-H-paniculata_contig33313:621..6771622930029.5577805-CDS-H-paniculata_contig33313:621..677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33313 622..677 +
1691481117.1490278-CDS-H-paniculata_contig33313:621..6771691481117.1490278-CDS-H-paniculata_contig33313:621..677Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33313 622..677 +
1622930029.571338-CDS-H-paniculata_contig33313:1397..15781622930029.571338-CDS-H-paniculata_contig33313:1397..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33313 1398..1578 +
1691481117.157095-CDS-H-paniculata_contig33313:1397..15781691481117.157095-CDS-H-paniculata_contig33313:1397..1578Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33313 1398..1578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33313.8933.1

>prot_H-paniculata_contig33313.8933.1 ID=prot_H-paniculata_contig33313.8933.1|Name=mRNA_H-paniculata_contig33313.8933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
MAGAVEDRRWRLQEAVLLGLGTGSKAIIRLVKRRCRRSRSRGKSRYISPE
ELCLGGKSLGLDLPGFQAVTIAAAEVGG*
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mRNA from alignment at H-paniculata_contig33313:613..1578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33313.8933.1 ID=mRNA_H-paniculata_contig33313.8933.1|Name=mRNA_H-paniculata_contig33313.8933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=966bp|location=Sequence derived from alignment at H-paniculata_contig33313:613..1578+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAATGGATGGCAGGGGCGGTGGAGGATCGTAGATGGAGACTACAAGA
AGCTGTGCTGTTGGGGTAAGGTGTCTAATCCTCTGTAACAATCGGCTTAT
GTTATTTTTTATATACATGAATTGCATGCATCATGGACTGATTGATCTAT
TTCATTGGTATTGTGAATAAATATATGTCATTATGTTTTACCTAATTACC
TAGTTACTATTGCGGTGAGGTCGTCGTCGTCATCATCGTTTCGGAACGTT
CGAAATATTTTCCCAACTCTGTACTGTAGTAATTTTTCAAAACCAAATCT
TGGTTTAAGGACAATCCTGGAGCATTCGGAACAGATTTTAAGTTCTGTGC
TCGAGAAAATTTGTAGAGCGAATCATGGGTCGAGGTCAAAGCACGAAGTG
TACCCTAAGTCGTCGTCGCAGCCCCTCAGCTGTACTTTTTCAGTACTATG
ACCAGCAGTTGATATTGAAAACCTCACCGAGACACTTTATTTTTTCCAGT
TTTTTTTATCGATTATTGTCTCTGAAATCCGCCAATGATAGCCTTCAAGA
ATTTGGTTGCGGAGCTACCCTCAAAATTTCAGGTTCGAGCTCGGCAAAAA
GCAAAGCGAGAAGATCCCCTGTCGACTGCATCGGGTCTCTCTCGCTGGGG
CTGGTCAGACTACATTCGCTTGCTGGCGACGTTGCGTTTTCGCAATAAGC
GAAACAAGCAGAAATATATATATATATATATTTTGTTTCGCGTGTGTAAG
TAACTCATCTCCCCCCCCTCCTGCTCGCGCCGCAGCCTCGGGACGGGATC
GAAGGCCATAATTCGACTAGTGAAGAGGCGATGTCGACGTAGTAGGAGTA
GGGGCAAGAGCCGCTATATATCGCCTGAGGAGCTCTGCCTTGGAGGCAAG
TCGCTAGGCTTAGACTTGCCTGGGTTTCAAGCGGTGACCATCGCGGCGGC
GGAGGTGGGAGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33313:613..1578+

>mRNA_H-paniculata_contig33313.8933.1 ID=mRNA_H-paniculata_contig33313.8933.1|Name=mRNA_H-paniculata_contig33313.8933.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig33313:613..1578+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGGGGCGGTGGAGGATCGTAGATGGAGACTACAAGAAGCTGTGCT
GTTGGGATGGCAGGGGCGGTGGAGGATCGTAGATGGAGACTACAAGAAGC
TGTGCTGTTGGGCCTCGGGACGGGATCGAAGGCCATAATTCGACTAGTGA
AGAGGCGATGTCGACGTAGTAGGAGTAGGGGCAAGAGCCGCTATATATCG
CCTGAGGAGCTCTGCCTTGGAGGCAAGTCGCTAGGCTTAGACTTGCCTGG
GTTTCAAGCGGTGACCATCGCGGCGGCGGAGGTGGGAGGGTAGCCTCGGG
ACGGGATCGAAGGCCATAATTCGACTAGTGAAGAGGCGATGTCGACGTAG
TAGGAGTAGGGGCAAGAGCCGCTATATATCGCCTGAGGAGCTCTGCCTTG
GAGGCAAGTCGCTAGGCTTAGACTTGCCTGGGTTTCAAGCGGTGACCATC
GCGGCGGCGGAGGTGGGAGGGTAG
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