mRNA_H-paniculata_contig3330.8924.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3330.8924.1
Unique NamemRNA_H-paniculata_contig3330.8924.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3330.8924.1 vs. uniprot
Match: A0A6H5KNA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNA0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 3.300e-13
Identity = 68/146 (46.58%), Postives = 76/146 (52.05%), Query Frame = 2 
Query:  731 DGSADNEVMAILSSP--GKKFVVKPLPRPGGVAQAPATLGPPSPRSNGHAAH---------------AAAGLALPSAGVADYLGEGSGHGHGGVVGLGPGGDLAGVGNAGAGGDSGVSPPRTPGLPKSSSASWDPHSQSSSSAFSV 1117
            D SAD EVMAILSSP   KKFVVKP PRPGG         P SP +NG+AA                A AGL     G  + +             +G G     +G   A G +  SPP+TPGLPK SSASWDPH QSSSSAFSV
Sbjct:   13 DASADKEVMAILSSPVQQKKFVVKPQPRPGGAI-------PASPAANGNAAFVPPASATTLGGDRRDATAGLPRVRCGAVEAV-------------VGGGXXXXXIGAVDATGLAAPSPPQTPGLPKPSSASWDPHVQSSSSAFSV 138
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BLAST of mRNA_H-paniculata_contig3330.8924.1 vs. uniprot
Match: D8LN70_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN70_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.360e-6
Identity = 64/144 (44.44%), Postives = 68/144 (47.22%), Query Frame = 2 
Query:  731 DGSADNEVMAILSSPG--KKFVVKPLPRPGGVAQAPATLGPPSPRSNGHAAHAAAGLALPSAGVADYLGEGSGHGHGGVVGLGPGGDLAGVGNAGAGGDSGVSPPRTP-------------GLPKSSSASWDPHSQSSSSAFSV 1117
            D SAD EVMAILSSP   KKFVVKP PRPGG         P SP +NG+AA       +P + VA  LG              PGG    V     GG                       GLPK SSASWDPH QSSSSAFSV
Sbjct:   13 DASADKEVMAILSSPAQQKKFVVKPQPRPGGAF-------PASPAANGNAAF------VPPSSVA-ALGSDLRD----TTAALPGGRCGAVEAVVGGGXXXXXXXXXXXXXXXXXXXXXXXGLPKPSSASWDPHVQSSSSAFSV 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3330.8924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KNA0_9PHAE3.300e-1346.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN70_ECTSI3.360e-644.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3330contigH-paniculata_contig3330:5366..7709 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1119
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3330.8924.1prot_H-paniculata_contig3330.8924.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3330 7188..7709 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.115071-UTR-H-paniculata_contig3330:5365..54521622930029.115071-UTR-H-paniculata_contig3330:5365..5452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3330 5366..5452 +
1691481116.9467642-UTR-H-paniculata_contig3330:5365..54521691481116.9467642-UTR-H-paniculata_contig3330:5365..5452Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3330 5366..5452 +
1622930029.128469-UTR-H-paniculata_contig3330:6679..71871622930029.128469-UTR-H-paniculata_contig3330:6679..7187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3330 6680..7187 +
1691481116.9566367-UTR-H-paniculata_contig3330:6679..71871691481116.9566367-UTR-H-paniculata_contig3330:6679..7187Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3330 6680..7187 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.15062-CDS-H-paniculata_contig3330:7187..77091622930029.15062-CDS-H-paniculata_contig3330:7187..7709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 7188..7709 +
1691481116.9666176-CDS-H-paniculata_contig3330:7187..77091691481116.9666176-CDS-H-paniculata_contig3330:7187..7709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3330 7188..7709 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3330.8924.1

>prot_H-paniculata_contig3330.8924.1 ID=prot_H-paniculata_contig3330.8924.1|Name=mRNA_H-paniculata_contig3330.8924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=174bp
MLPGPGEREQGTAAAAAAAAAAAAAQMMQHKQRQQQQQQQQQSVDDGSAD
NEVMAILSSPGKKFVVKPLPRPGGVAQAPATLGPPSPRSNGHAAHAAAGL
ALPSAGVADYLGEGSGHGHGGVVGLGPGGDLAGVGNAGAGGDSGVSPPRT
PGLPKSSSASWDPHSQSSSSAFSV
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mRNA from alignment at H-paniculata_contig3330:5366..7709+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3330.8924.1 ID=mRNA_H-paniculata_contig3330.8924.1|Name=mRNA_H-paniculata_contig3330.8924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2344bp|location=Sequence derived from alignment at H-paniculata_contig3330:5366..7709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTAAGGCAAACCGGTTGCAGCTGACACAGCCACCCCTCGCAGACAGCA
CCCGAGTGTGCATCGTATGCTACGTCATAGACAACAGGTGAGACCACGAA
TACGCTCTATAGCGTGAGGTCTTGTGCCATGATGACATTGTGTCTAAAAT
GTGGTTGATTTGGTGGCGCCTATTTGGCGAGAGGAAGAGAGTGTGCGTAG
AGTGCTCAGGACTGTAGGTGCGTAATTTTATGTGTATGTAGGTCCCGCGT
TTGCGGGGGCAGCAGGAGGGAGGCATACAGGGGTGCTGAGTTACTGATGT
TGCAGAATGTCTTGGGGTGATGATATCGATGGCGTGGATCAAGCCTATCT
CGAAAGAGAGATAGGCACACTAGCTGTCGGCGCGGTCTAGGACCGTGCTG
GCGGTGCTGGCGCGAGTTGGCGACGGTGGCGACGCCTTTGTTTATTACTA
TATTTTGAGGAGGAGAGACCCAACGGCCGATTTTTTCCGACTGGGGTAGC
TGATTTTTGGACATCAGGCATGATGTTGGCGCTCGCCTGACACCCCTATC
TCGCGCAGTGCCGTTCCTGTAGAGATCCTCCATGGAGATGTTGCCGAGGA
TTAAGAATTTTCAGAAAACGCCGGAGCTGTCGTGGTTTGTAGCGTCGTTG
TCATCGTGGTGTAGCGCAGCTCTTCGGCGGTCCGAACCATCCCACAACAC
AAAATAGCACACAGCTGGTGTTCAAAAAGAGCCATGACGGAAATAAACGT
AACACACCTGTGTGTTTTCGCCGTTGTGATAAAACGATCCCAAGCACACA
GACACATCGTCAGCAATACACTACAAGACAGTAGCAGTACATGCACTGAT
TGTGTAAGGTCAGCACAACCATGTGGTGCCCTCTCATGTTCGCGTGTATC
CAGCTCCTCTTCCAGTGCGACATTCGGCAAATTCGACGTGCTTTTTATTT
TGTCCCTATGCCTAGCGAACGCCACTGACACACTTGACGCCCTCTGTCTC
TTGTGAGCGGCAAAACTTGAGAAATGTGTCACGTTTATTCGCATCTCCAT
TTAGCTCAGCCTCGCCTGAACACAAAGGGTGTATGGTGCACACTGAGGCC
AAGTATTGTCGTTGGTTGATTCCCAGAGAAACCCAGACTCCGCCACAAAA
TCTCGTGGCACGTTACTGTCGTGCTTGCTGCAGCATGTCGCAGGTATAAC
AAAACACACGATCTCACAAAATGGTCGGGTGTCGGTACATCATTTTGTCT
AGAATAACACAAAGACAGTCGTGGCTTGTGCTGCTTGCTGTGGCATCTCT
TCCGTCGCTTTCAGGCTTTTGAGAAATAAGCAGCGGCGAAACCAACTCCG
AAGCACGGAGTGGGAGAGGAGAAAAGGAGCAAAAAGCGGGAGCGGGCGGC
GCGTAATGTCGGCGAGGCCTGTGACAACACGTGGCAGCGGGGAAGGCGAA
GGATAAAAACAGGAGGGTTGTGAATTAATTGTGCGTCCTTGGTCGGGGCG
CGTGTGGTCCACGGAGCGCTCACAAAATAGCCGCGCGAGACATCAAATTA
TCCGTTAGAGCCGGAGGCTTGCAAGGCGGGCTGCTCGCTGAAGGAGTAGC
AAACTACTCGCAGGTACTCTCACAGACGCAGCTCCCCCTCGCTGAAGGAA
AGGCGACCAGGTCTGTGTGTGTGATTGCGGGACCGACAACTAACACCCGG
ACCGCGCGATAATTGACATACTTTTTAGAAGAACTAGCGCTGCGCTGTAC
GGTTCAGTACGGACAGCGGCGCAATTCAACCCTTTCTAACGACGGTAATC
GAGAGGGTACAGCGTACCAACTATGCTGCCTGGGCCTGGTGAGAGAGAGC
AGGGTACAGCGGCTGCGGCTGCGGCTGCGGCGGCGGCAGCGGCAGCGCAA
ATGATGCAACATAAGCAGAGGCAGCAGCAACAGCAGCAGCAGCAACAGTC
AGTAGACGACGGCTCTGCCGACAACGAGGTTATGGCAATCCTCTCCAGCC
CTGGCAAAAAATTCGTCGTGAAGCCCCTGCCTCGCCCAGGCGGCGTCGCG
CAGGCTCCCGCGACGCTCGGGCCGCCCTCCCCGCGATCGAACGGCCATGC
CGCGCACGCTGCTGCCGGCTTGGCTTTGCCTTCGGCAGGAGTTGCGGACT
ACCTTGGCGAAGGCAGCGGACACGGACACGGCGGCGTTGTTGGGTTGGGG
CCGGGTGGCGATTTGGCGGGGGTCGGCAATGCTGGTGCCGGGGGTGACTC
TGGTGTGTCCCCACCACGGACGCCTGGACTACCCAAGTCGAGTAGCGCGT
CGTGGGATCCCCATAGTCAGAGCTCCAGCAGCGCTTTTTCGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3330:5366..7709+

>mRNA_H-paniculata_contig3330.8924.1 ID=mRNA_H-paniculata_contig3330.8924.1|Name=mRNA_H-paniculata_contig3330.8924.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1044bp|location=Sequence derived from alignment at H-paniculata_contig3330:5366..7709+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGCCTGGGCCTGGTGAGAGAGAGCAGGGTACAGCGGCTGCGGCTGC
GGCTGCGGCGGCGGCAGCGGCAGCGCAAATGATGCAACATAAGCAGAGGC
AGCAGCAACAGCAGCAGCAGCAACAGTCAGTAGACGACGGCTCTGCCGAC
AACGAGGTTATGGCAATCCTCTCCAGCCCTGGCAAAAAATTCGTCGTGAA
GCCCCTGCCTCGCCCAGGCGGCGTCGCGCAGGCTCCCGCGACGCTCGGGC
CGCCCTCCCCGCGATCGAACGGCCATGCCGCGCACGCTGCTGCCGGCTTG
GCTTTGCCTTCGGCAGGAGTTGCGGACTACCTTGGCGAAGGCAGCGGACA
CGGACACGGCGGCGTTGTTGGGTTGGGGCCGGGTGGCGATTTGGCGGGGG
TCGGCAATGCTGGTGCCGGGGGTGACTCTGGTGTGTCCCCACCACGGACG
CCTGGACTACCCAAGTCGAGTAGCGCGTCGTGGGATCCCCATAGTCAGAG
CTCCAGCAGCGCTTTTTCGGTGATGCTGCCTGGGCCTGGTGAGAGAGAGC
AGGGTACAGCGGCTGCGGCTGCGGCTGCGGCGGCGGCAGCGGCAGCGCAA
ATGATGCAACATAAGCAGAGGCAGCAGCAACAGCAGCAGCAGCAACAGTC
AGTAGACGACGGCTCTGCCGACAACGAGGTTATGGCAATCCTCTCCAGCC
CTGGCAAAAAATTCGTCGTGAAGCCCCTGCCTCGCCCAGGCGGCGTCGCG
CAGGCTCCCGCGACGCTCGGGCCGCCCTCCCCGCGATCGAACGGCCATGC
CGCGCACGCTGCTGCCGGCTTGGCTTTGCCTTCGGCAGGAGTTGCGGACT
ACCTTGGCGAAGGCAGCGGACACGGACACGGCGGCGTTGTTGGGTTGGGG
CCGGGTGGCGATTTGGCGGGGGTCGGCAATGCTGGTGCCGGGGGTGACTC
TGGTGTGTCCCCACCACGGACGCCTGGACTACCCAAGTCGAGTAGCGCGT
CGTGGGATCCCCATAGTCAGAGCTCCAGCAGCGCTTTTTCGGTG
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