mRNA_H-paniculata_contig33297.8916.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33297.8916.1
Unique NamemRNA_H-paniculata_contig33297.8916.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33297.8916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33297contigH-paniculata_contig33297:257..1428 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-15_000990.1
Exons2
Model size223
Cds size114
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33297.8916.1prot_H-paniculata_contig33297.8916.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33297 257..1321 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.801611-CDS-H-paniculata_contig33297:256..3081622930027.801611-CDS-H-paniculata_contig33297:256..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33297 257..308 -
1691481116.3864064-CDS-H-paniculata_contig33297:256..3081691481116.3864064-CDS-H-paniculata_contig33297:256..308Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33297 257..308 -
1622930027.813604-CDS-H-paniculata_contig33297:1259..13211622930027.813604-CDS-H-paniculata_contig33297:1259..1321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33297 1260..1321 -
1691481116.3968096-CDS-H-paniculata_contig33297:1259..13211691481116.3968096-CDS-H-paniculata_contig33297:1259..1321Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33297 1260..1321 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.8286788-UTR-H-paniculata_contig33297:1321..14281622930027.8286788-UTR-H-paniculata_contig33297:1321..1428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33297 1322..1428 -
1691481116.4084363-UTR-H-paniculata_contig33297:1321..14281691481116.4084363-UTR-H-paniculata_contig33297:1321..1428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig33297 1322..1428 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33297.8916.1

>prot_H-paniculata_contig33297.8916.1 ID=prot_H-paniculata_contig33297.8916.1|Name=mRNA_H-paniculata_contig33297.8916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MKSAVIAVACAAGAQAFVAPSAFNGAALTQSARASSSM
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mRNA from alignment at H-paniculata_contig33297:257..1428-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33297.8916.1 ID=mRNA_H-paniculata_contig33297.8916.1|Name=mRNA_H-paniculata_contig33297.8916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1172bp|location=Sequence derived from alignment at H-paniculata_contig33297:257..1428- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAACACTCTTGTTGACCACCCCAGTCTCTCACTTTCCTCACCCACTACGC
CGACGACCAATTCATCAAGCCTATTCCTAATCTATCACAATACTCCTAAA
GTCGAAGATGAAGTCTGCTGTGATCGCCGTTGCTTGCGCCGCTGGTGCCC
AGGCCTTCGTGGCCCCTAGGTGAGTGTAGAACCCGCTCTCTACTTGCTGT
ACCCAATGCTTCTTGTACAGACTGTAGTTTGATCCGAATATGTTGGGGAG
GTGGGTATGTAGTGTTCGACTTGAGACGAGTCCGCAGTTTGCTGGAAGGT
GTTCCGGAAGCCTCACGAGCCCCTCGCATTGCACAGTTGATGGATCAGTC
TGCCCAGTTGCGTTGTTTTTGTTGTATCATGTTTGCCACCCAATGGTATG
GAGTTGAGATGAGTCTGCTCTTTGCTCAAAGGTGTTCTGGCGTCCTCGCG
AGCCCCTCGCATTGTACAGTTGACGGATCAGTCTGCCCAGTTGCGTTGTT
TTTGTTGTAATCATGTTTGCCACCCAATGATCAGTCTGGGTCGGCCTCGA
GTCATGATCTCATCACGTATCGCACATCATTACTGTCATTCACACAAAGC
ATGCGAGTTTGTTTCACATCCAACGCTTTGCCAAACCGAAGATAACGGCG
GTCGTGCCCGCTGTCGTCTCAAGAGGACTATGTACGATCGTGACGAGTAG
AGGTTTCATGTTGACATCGTGTGGGTTGCTTGTCGCCGTACTTTGAGCAA
GACACTTTGCAACCCCCTGACCACGGAGATGGTCCAGGATTGACGCTCCA
CGGCTTTGTGTTGGTTTGCGCACAGTTGTCTCGAATCGCACCTACATTTC
AGCAGAGTTGCCCCCCTTGGTATGGATGTACGCGTGTTCAACGTCGGATA
TGTTTGTAGATTCGGTACGTCCGATCGTACACCATTCCACAAAGAAAATA
TGCCGCCGCCTCACCTAAAAATTGTGCTTTGTATCGTCGGGTATTTTCTA
CAAACGGCCGGCCGCACCTTATACTTCCATTCGGTGAACATGGCGTGTAC
CTGCCTCCTTCGATTGCCTACACTCATATGCCATCTTCGTCCTTCCCGTG
CCCCTCCTCCCCATCTGCAGCGCCTTCAATGGAGCCGCCCTGACCCAGTC
CGCCAGGGCCTCGTCCTCCATG
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Coding sequence (CDS) from alignment at H-paniculata_contig33297:257..1428-

>mRNA_H-paniculata_contig33297.8916.1 ID=mRNA_H-paniculata_contig33297.8916.1|Name=mRNA_H-paniculata_contig33297.8916.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig33297:257..1428- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGTCTGCTGTGATCGCCGTTGCTTGCGCCGCTGGTGCCCAGGCCTT
CGTGGCCCCTAGATGAAGTCTGCTGTGATCGCCGTTGCTTGCGCCGCTGG
TGCCCAGGCCTTCGTGGCCCCTAGCGCCTTCAATGGAGCCGCCCTGACCC
AGTCCGCCAGGGCCTCGTCCTCCATGCGCCTTCAATGGAGCCGCCCTGAC
CCAGTCCGCCAGGGCCTCGTCCTCCATG
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