mRNA_H-paniculata_contig33287.8915.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33287.8915.1
Unique NamemRNA_H-paniculata_contig33287.8915.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A8H7SQE6_9FUNG (Cellulase n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7SQE6_9FUNG)

HSP 1 Score: 56.2 bits (134), Expect = 3.600e-8
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVER--NEWYSQCIPS--INNK 105
            CGGK WDGPTCC AG+ CV    NE+YSQCIP+  I NK
Sbjct:   31 CGGKYWDGPTCCEAGSTCVSEPWNEYYSQCIPNEHITNK 69
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A0J9X5P0_GEOCN (Cellulase n=1 Tax=Geotrichum candidum TaxID=1173061 RepID=A0A0J9X5P0_GEOCN)

HSP 1 Score: 55.5 bits (132), Expect = 6.760e-8
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCI 87
            CGG+ WDGPTCC +G+KC  +NEWY QC+
Sbjct:   29 CGGRNWDGPTCCESGSKCQIQNEWYHQCV 57
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A367KTX2_RHIST (Cellulase n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KTX2_RHIST)

HSP 1 Score: 54.3 bits (129), Expect = 1.710e-7
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCIPSINNK 105
            CGGK W+G TCC +G+ C   N++YSQCIP  +NK
Sbjct:   33 CGGKNWNGSTCCESGSTCTVSNDYYSQCIPGSSNK 67
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: I6LTQ2_RHIST (Cellulase n=1 Tax=Rhizopus stolonifer var. reflexus TaxID=219329 RepID=I6LTQ2_RHIST)

HSP 1 Score: 53.1 bits (126), Expect = 4.290e-7
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCIPS 93
            CGGK W+GPTCC +G+ C   N++YSQC+PS
Sbjct:   33 CGGKNWNGPTCCESGSTCKVSNDYYSQCLPS 63
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: I1BVK4_RHIO9 (Cellulase n=2 Tax=Rhizopus TaxID=4842 RepID=I1BVK4_RHIO9)

HSP 1 Score: 53.1 bits (126), Expect = 4.380e-7
Identity = 19/31 (61.29%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCIPS 93
            CGGK W+GPTCC +G+ C   N++YSQC+PS
Sbjct:   33 CGGKNWNGPTCCESGSTCKVSNDYYSQCLPS 63
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: I1CCY7_RHIO9 (Cellulase n=2 Tax=Rhizopus TaxID=4842 RepID=I1CCY7_RHIO9)

HSP 1 Score: 52.8 bits (125), Expect = 6.040e-7
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVER--NEWYSQCIPSIN 99
            CGGK WDGPTCC +G+ CV+   N +YSQC+P+ N
Sbjct:   33 CGGKNWDGPTCCESGSTCVDYPDNPFYSQCVPNEN 67
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A367KQ96_RHIST (Cellulase n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367KQ96_RHIST)

HSP 1 Score: 52.8 bits (125), Expect = 6.060e-7
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVER--NEWYSQCIPSIN 99
            CGGK WDGPTCC +G+ CV+   N +YSQC+P+ N
Sbjct:   33 CGGKNWDGPTCCESGSTCVDYPDNPFYSQCVPNEN 67
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A0E3URF3_ADIRI (Cellulase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A0E3URF3_ADIRI)

HSP 1 Score: 52.4 bits (124), Expect = 7.700e-7
Identity = 21/34 (61.76%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCIPSINN 102
            CGGK+W G T C AG+KC+  NE+YSQC+PSI +
Sbjct:   28 CGGKEWKGQTNCCAGSKCMFGNEYYSQCLPSIES 61
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BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A812YFA0_SYMPI (CEL6A protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812YFA0_SYMPI)

HSP 1 Score: 52.0 bits (123), Expect = 1.130e-6
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCIPS 93
            CGG+ WDGPTCC AG  C+  + WYSQC P+
Sbjct:  522 CGGRNWDGPTCCEAGYVCLAESIWYSQCRPA 552
[Close]
BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Match: A0A1Y2DIF2_9FUNG (CBM1 domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2DIF2_9FUNG)

HSP 1 Score: 50.4 bits (119), Expect = 3.960e-6
Identity = 19/29 (65.52%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:    1 CGGKQWDGPTCCGAGTKCVERNEWYSQCI 87
            CGGK ++GPTCC +G+KCV  N++YSQCI
Sbjct:  438 CGGKNFNGPTCCQSGSKCVPLNDYYSQCI 466
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33287.8915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7SQE6_9FUNG3.600e-866.67Cellulase n=1 Tax=Thamnidium elegans TaxID=101142 ... [more]
A0A0J9X5P0_GEOCN6.760e-865.52Cellulase n=1 Tax=Geotrichum candidum TaxID=117306... [more]
A0A367KTX2_RHIST1.710e-757.14Cellulase n=1 Tax=Rhizopus stolonifer TaxID=4846 R... [more]
I6LTQ2_RHIST4.290e-761.29Cellulase n=1 Tax=Rhizopus stolonifer var. reflexu... [more]
I1BVK4_RHIO94.380e-761.29Cellulase n=2 Tax=Rhizopus TaxID=4842 RepID=I1BVK4... [more]
I1CCY7_RHIO96.040e-760.00Cellulase n=2 Tax=Rhizopus TaxID=4842 RepID=I1CCY7... [more]
A0A367KQ96_RHIST6.060e-760.00Cellulase n=1 Tax=Rhizopus stolonifer TaxID=4846 R... [more]
A0A0E3URF3_ADIRI7.700e-761.76Cellulase n=2 Tax=Adineta ricciae TaxID=249248 Rep... [more]
A0A812YFA0_SYMPI1.130e-661.29CEL6A protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A1Y2DIF2_9FUNG3.960e-665.52CBM1 domain-containing protein n=1 Tax=Neocallimas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33287contigH-paniculata_contig33287:983..1090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score60.1
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog78579.XP_003661032.1
Preferred namecbhC
KEGG rclassRC00799
KEGG koko:K19668
KEGG ReactionR02886,R11308
KEGG Pathwayko00500,ko01100,ko02020,map00500,map01100,map02020
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005975,GO:0005976,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009251,GO:0016052,GO:0016162,GO:0016787,GO:0016798,GO:0043170,GO:0044042,GO:0044238,GO:0071704,GO:1901575
EggNOG free text desc.Belongs to the glycosyl hydrolase family 6
EggNOG OGs21499@147550,2QWHE@2759,39RNX@33154,3HADI@35718,3NXS8@4751,3QMEP@4890,3UAEX@5139,COG5297@1
EC3.2.1.91
COG Functional cat.G
CAZyGH6
Best tax levelChaetomiaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.7552361-CDS-H-paniculata_contig33287:982..10901622930027.7552361-CDS-H-paniculata_contig33287:982..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33287 983..1090 -
1691481116.3710105-CDS-H-paniculata_contig33287:982..10901691481116.3710105-CDS-H-paniculata_contig33287:982..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33287 983..1090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33287.8915.1prot_H-paniculata_contig33287.8915.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33287 983..1090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33287.8915.1

>prot_H-paniculata_contig33287.8915.1 ID=prot_H-paniculata_contig33287.8915.1|Name=mRNA_H-paniculata_contig33287.8915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
CGGKQWDGPTCCGAGTKCVERNEWYSQCIPSINNK*
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mRNA from alignment at H-paniculata_contig33287:983..1090-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33287.8915.1 ID=mRNA_H-paniculata_contig33287.8915.1|Name=mRNA_H-paniculata_contig33287.8915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at H-paniculata_contig33287:983..1090- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGGAGGCAAGCAGTGGGACGGCCCCACTTGCTGCGGTGCTGGTACCAA
GTGTGTAGAGAGGAACGAGTGGTATTCGCAGTGCATTCCTTCTATCAACA
ATAAATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33287:983..1090-

>mRNA_H-paniculata_contig33287.8915.1 ID=mRNA_H-paniculata_contig33287.8915.1|Name=mRNA_H-paniculata_contig33287.8915.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig33287:983..1090- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGGAGGCAAGCAGTGGGACGGCCCCACTTGCTGCGGTGCTGGTACCAA
GTGTGTAGAGAGGAACGAGTGGTATTCGCAGTGCATTCCTTCTATCAACA
ATAAATAATGTGGAGGCAAGCAGTGGGACGGCCCCACTTGCTGCGGTGCT
GGTACCAAGTGTGTAGAGAGGAACGAGTGGTATTCGCAGTGCATTCCTTC
TATCAACAATAAATAA
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