mRNA_H-paniculata_contig3324.8910.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3324.8910.1
Unique NamemRNA_H-paniculata_contig3324.8910.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3324.8910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3324contigH-paniculata_contig3324:2232..3158 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size929
Cds size684
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.065855-UTR-H-paniculata_contig3324:2231..24741622930027.065855-UTR-H-paniculata_contig3324:2231..2474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3324 2232..2474 +
1691481116.1012294-UTR-H-paniculata_contig3324:2231..24741691481116.1012294-UTR-H-paniculata_contig3324:2231..2474Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3324 2232..2474 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.0859065-CDS-H-paniculata_contig3324:2474..31581622930027.0859065-CDS-H-paniculata_contig3324:2474..3158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3324 2475..3158 +
1691481116.1093202-CDS-H-paniculata_contig3324:2474..31581691481116.1093202-CDS-H-paniculata_contig3324:2474..3158Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3324 2475..3158 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3324.8910.1prot_H-paniculata_contig3324.8910.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3324 2475..3158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3324.8910.1

>prot_H-paniculata_contig3324.8910.1 ID=prot_H-paniculata_contig3324.8910.1|Name=mRNA_H-paniculata_contig3324.8910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=228bp
MDSRLSSRRGPAAATAAPLPPTNRRLRRRPVTPSPTLSDQRHSRIFLLRA
PPGTATVTALVVSIGAAAAAAAAAAALGCRYSAPVAAAAAHVAFSVPSMN
SVVQSRASTYGHRRGGCAADGTFETRYGGSRRAPAGGGGDGSSSSSIGRT
AASRINRQGVAMPLRMMSAVAPPASIPASAAGFGGGEHRGDGDGDELHPL
DERPNGSGGGGGGGGGGGGGGGVRKSVV
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mRNA from alignment at H-paniculata_contig3324:2232..3158+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3324.8910.1 ID=mRNA_H-paniculata_contig3324.8910.1|Name=mRNA_H-paniculata_contig3324.8910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=927bp|location=Sequence derived from alignment at H-paniculata_contig3324:2232..3158+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAGAGTCGGCAGTTTGCGAGATGTGTCAATATTTGTACCACGACCAG
GGTTTTTATGTGTCTGTTTATGCGATGTCAGCGTTTGTCTATTCCGTCTA
TTAATAATATCCCCCCCTTACCGCCACCCTACCCTCGACTCCATTCTCTC
CTGAAAAGGCTTTACGACACAAGCAGTGGGCTGAACACCCTACCCAACAC
TTGACACGCATCTCAGTCGCCAGGCTTGGCCAGCGAGGTCGACATGGACA
GCCGACTCTCCAGTCGCCGGGGACCGGCGGCGGCGACGGCGGCACCACTA
CCCCCTACAAACAGGCGCCTCAGACGGCGCCCGGTCACGCCGTCGCCTAC
ACTATCGGATCAACGGCATTCGAGAATTTTTTTGTTGCGGGCGCCGCCGG
GGACCGCTACGGTTACGGCATTGGTCGTCTCGATCGGCGCAGCAGCGGCG
GCAGCGGCAGCAGCAGCAGCTCTAGGATGCCGCTATTCCGCGCCGGTAGC
AGCGGCAGCAGCACACGTGGCTTTTTCCGTGCCCTCCATGAACAGCGTCG
TTCAATCGAGGGCTTCTACGTATGGGCATCGTCGAGGGGGGTGTGCCGCC
GACGGAACATTCGAGACTCGCTATGGAGGGTCGCGACGAGCACCAGCCGG
CGGCGGCGGGGACGGCAGCAGTAGCAGCAGCATAGGCCGCACCGCCGCAA
GTAGAATAAACAGACAGGGTGTTGCGATGCCACTGCGAATGATGAGCGCC
GTCGCGCCGCCCGCCTCGATCCCAGCTTCCGCGGCAGGGTTCGGTGGCGG
CGAACACCGCGGCGATGGTGACGGCGATGAGCTGCATCCGCTGGACGAGC
GACCAAACGGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGTGTACGCAAGTCGGTAGTT
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Coding sequence (CDS) from alignment at H-paniculata_contig3324:2232..3158+

>mRNA_H-paniculata_contig3324.8910.1 ID=mRNA_H-paniculata_contig3324.8910.1|Name=mRNA_H-paniculata_contig3324.8910.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1368bp|location=Sequence derived from alignment at H-paniculata_contig3324:2232..3158+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAGCCGACTCTCCAGTCGCCGGGGACCGGCGGCGGCGACGGCGGC
ACCACTACCCCCTACAAACAGGCGCCTCAGACGGCGCCCGGTCACGCCGT
CGCCTACACTATCGGATCAACGGCATTCGAGAATTTTTTTGTTGCGGGCG
CCGCCGGGGACCGCTACGGTTACGGCATTGGTCGTCTCGATCGGCGCAGC
AGCGGCGGCAGCGGCAGCAGCAGCAGCTCTAGGATGCCGCTATTCCGCGC
CGGTAGCAGCGGCAGCAGCACACGTGGCTTTTTCCGTGCCCTCCATGAAC
AGCGTCGTTCAATCGAGGGCTTCTACGTATGGGCATCGTCGAGGGGGGTG
TGCCGCCGACGGAACATTCGAGACTCGCTATGGAGGGTCGCGACGAGCAC
CAGCCGGCGGCGGCGGGGACGGCAGCAGTAGCAGCAGCATAGGCCGCACC
GCCGCAAGTAGAATAAACAGACAGGGTGTTGCGATGCCACTGCGAATGAT
GAGCGCCGTCGCGCCGCCCGCCTCGATCCCAGCTTCCGCGGCAGGGTTCG
GTGGCGGCGAACACCGCGGCGATGGTGACGGCGATGAGCTGCATCCGCTG
GACGAGCGACCAAACGGGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCGGCGGCGGCGGTGTACGCAAGTCGGTAGTTATGGACAGCCGACTCT
CCAGTCGCCGGGGACCGGCGGCGGCGACGGCGGCACCACTACCCCCTACA
AACAGGCGCCTCAGACGGCGCCCGGTCACGCCGTCGCCTACACTATCGGA
TCAACGGCATTCGAGAATTTTTTTGTTGCGGGCGCCGCCGGGGACCGCTA
CGGTTACGGCATTGGTCGTCTCGATCGGCGCAGCAGCGGCGGCAGCGGCA
GCAGCAGCAGCTCTAGGATGCCGCTATTCCGCGCCGGTAGCAGCGGCAGC
AGCACACGTGGCTTTTTCCGTGCCCTCCATGAACAGCGTCGTTCAATCGA
GGGCTTCTACGTATGGGCATCGTCGAGGGGGGTGTGCCGCCGACGGAACA
TTCGAGACTCGCTATGGAGGGTCGCGACGAGCACCAGCCGGCGGCGGCGG
GGACGGCAGCAGTAGCAGCAGCATAGGCCGCACCGCCGCAAGTAGAATAA
ACAGACAGGGTGTTGCGATGCCACTGCGAATGATGAGCGCCGTCGCGCCG
CCCGCCTCGATCCCAGCTTCCGCGGCAGGGTTCGGTGGCGGCGAACACCG
CGGCGATGGTGACGGCGATGAGCTGCATCCGCTGGACGAGCGACCAAACG
GGAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGT
GTACGCAAGTCGGTAGTT
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