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Homology
BLAST of mRNA_H-paniculata_contig332.8906.1 vs. uniprot
Match: A0A6H5KWP8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWP8_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 1.100e-10 Identity = 50/95 (52.63%), Postives = 59/95 (62.11%), Query Frame = 3
Query: 201 MEGTKDDAQATRKRKLAALKARRQESNLANTALQDAAPGTSSKSP--SADITPPPDEVYAASVFGNTGSGVGDSGIDPSQPTAPPLVVGWGTGDL 479
MEG +D +RKRKLA LKARR++SNLAN AL + SP + P PDEVYA SVFG+ G G + +D A PLVVGWGTGDL
Sbjct: 1 MEGKED----SRKRKLAVLKARREQSNLANAALAEKEDSNKRASPPKEKERLPGPDEVYATSVFGSVG---GAAEVDGGN--ANPLVVGWGTGDL 86
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 901 |
| Cds size | 699 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig332.8906.1 >prot_H-paniculata_contig332.8906.1 ID=prot_H-paniculata_contig332.8906.1|Name=mRNA_H-paniculata_contig332.8906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
MEGTKDDAQATRKRKLAALKARRQESNLANTALQDAAPGTSSKSPSADIT PPPDEVYAASVFGNTGSGVGDSGIDPSQPTAPPLVVGWGTGDLSSGGIGN IGGSNSSNRKQHQTPQHQQSHHHQTPPGPPMSGSPSPHPPPSQGFHPPIP PGDAFHLPPPQGGVACWQGMPPFAPPPPPCYPSPAQGHFLPGDPRGGQPP PLPHYYYPPPAQQGFHRNEGAGGGAAGGWGQQG back to topmRNA from alignment at H-paniculata_contig332:25195..32527+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig332.8906.1 ID=mRNA_H-paniculata_contig332.8906.1|Name=mRNA_H-paniculata_contig332.8906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7333bp|location=Sequence derived from alignment at H-paniculata_contig332:25195..32527+ (Halopteris paniculata Hal_grac_a_UBK monoicous) TCACCCGTTCCCTGCAAAATTAGCAAGCGAGTGGGACTGCTGCCTCCACC
GCGCGATAATAGCAGGCAAGAACGAGATATTAGATTCCCAGGTTCGACTG
GGGGTCTCGATAAGATGATCTGTACTTAATACAAAATTGAAAAAAATAGT
AAGGACACAGTAGTAAGAGGTGGGGATAGGTGGACGTGTAAACTCGGCTA
ATGGAAGGAACAAAGGACGATGCACAGGCGACACGGAAGAGGAAGCTGGC
GGCATTGAAGGCGAGAAGACAAGAGAGCAACCTCGCGAACACCGCTTTAC
AGGACGCGGCTCCTGGCACTTCGAGGTGGGCTGCGAGTTGGTTTTTAAAT
ACCTACTCTTAAAATTCAAATCAATTTACTGTGGTATCTTTTCGATACAG
GGTTTGCCCCTAGGTCACCTGCGAAAATCAGCAATTGGCAGTTATACATA
CAGTTCCGTACCCCGATTCAATGCTTCAACGGGCTGCGGACGTTAGAGTT
AGGGTTGGGGATGGGGTTGAAATCGGCAACTATCATTTCGACCCTGTTCT
TCGTACGCATATTTATCCGAAAACACAGATAATACAACCAGTGGTGATGT
TTTGGACAAGCCTGCAAGCTTCGGTTCGTACACACATGTACTGAGCAGAC
CCCGACAAGGAGAGTATCACAGACCTACAAATACCTTAATAGTGTGTCGG
CTGTCTGTACAATAGACAGCGCATTAGGATGTGCTGTGTATCTAAACGTC
TAAACCCTTGTGCGCCGGAAGAGGCTGCTTCGGAATAAGATGATCAGGCA
AAAATGAAGCTCTACGGGTTCAACATCAGCCTGCTGCAGTCATTGTGTCA
ACTCCCTGTCTATCCTGTATGAAAGGACTGTACTCGATCGGCTGTCTTGC
AGTGGCGGGTTCCTATCGTCCCTATTTAAGGATAGGCGCTTGTTTTTTTT
CTATTTTTCACGTGGGATCAAGTGGGGATTGGCGCCAAAGGGGATATTAC
AGACCATGAAGTTGGCATCGCGACAAATTTCGACACACAGGAGTGGTGGT
TTTTGGTAGGGGCGGGGTCACCGAATTCCAACTGACAGAATTGCTTTGGG
CGGGTTGAGATCAGATCCACATGTCGATAAACATGTGTATAATAGTAGAG
CGCGTTGCGACGTGTTTTAGCTACTCAAAGATTTCGACGCGAGATACCAG
CTTTTTTTACGATATGCACGTACGTCAAGAGCTGGCAGAGTAGCCGCAGC
GCCGTGCGCTTGATGTTGAAGTGGTACAGCTGAACAGCGCAAATGAAATG
ATGACATAGACTTGCGCCCGGCGACAAAAGAAACAGATAGAGGTACTGCA
TGTAGTACAGTTGGTACACTACTGCATTCAGCACCATTTGCGCGGCACAA
ATGAAGACGGGAGGAGAGAGCTGGGAGGCACCAACATATCTGAAAATTCC
GCAGCGAACGATAGCCGCTGCGTGTGTGGCGCCTTATTCAGCTGGAGATC
GGACTCGAATAGTGTGTTTCTCGCGAGTTTTAGGTACAAACTGGGGGAAA
GAGTAGACATTTCCAGGTACACCTGCTGGCAATGTGGCGGCTTCGAGGTA
CGGTTTTGTCTCGGCCAATCAGCAGGCCGTATTTGACCGAAGGACCCTGT
ACCTTAAAGTGGCCACAAATAGCCTAGTTGTACCTGCTGTATTTTCCCCA
TAAAAATATCTGCAAACCGTTTTGATTCCAAGAAGCGGCGAAATCACACC
AGGGCGGCCTGTGGCATAATCGTATCGGCTTCAATGACGAACGAAATAGG
TAGGAGGTTCACTGGGCTGACACAGGAGTGCACTGCGCCACTTTGGACAG
CGGGAATTGACGTACATGGCGTGCTGCAGACCACCGACAACAAGGCCCTC
TGCTTGCTCTGGGAACGTATTCAACACACGTAACGTTATGTTCCAACTCC
TGCCTTATCGTGGATTTGCCCACTCTAGGGCCGCACCGGCCTTAAGAAAA
CGCGAGTAAGGCACGTCGTGCTTTAAAGTGGGTCATAGGCGGTAGCCGAC
ATGAGTAAATTGGGTGTACAATCAGTAATGTGATGGAACATGTTTATCTG
AACGTTATCCAAAGCATGAAGGTCATGTGAACAAATTGCACCACACTCAA
CATATGCTACATGTCTTGGTCATTAGTCACCGGGTGGGTAGCTACTGCAT
GGCAAAGCTTTTTGCACTAAAAAATGTACTGTGATCAACACGCAGAACAC
ACGATGCACAGTAGAGAAAAAAAGCAGCATCCCATCCTGCTTGACTAACC
TAAACTGTAGTGCTCAGTGTGCTCACGTGAAGGCTTGACCGGTCTTACGT
AGAGATCCCTTTCAAGGCCGATTTGGCCTATTTCAACGAGGGGCACCGAA
TGATAGTTCCCATGAAAAAACCGTGTGGCATGCTGCTGTCGCGCAGTCAG
AACGCGATACAAACAGAGGATAATGGCCAAGGGCAGTGTATACACTTCTC
TCAGTTCTCTGTACTACTAGCACCAAGTACTGTCGTGTCTTGTAGCAGCT
ATATGTTCTCCTTCTGGTGATACAGGTGCACTACAACTTTGATTGCCAAA
TATGACGGCTCGCCTGATGGACAAGACAGTGAGCAGCTCGCTACATGCAT
TGACACATGGTGGCAACAATCCTCAGTTGGTCTCCATGCATGAGAGCATG
AGCGCAACACCGCTTGCGTATTGGATAAACAGACTGGGAACAGTGTGACC
CTGGATATCAATATACCTCGCAGCGGGGTTGCGCAGCACCTCAGCTTCCA
GTATATGTACGCCCCCCCCCTCCCTAAGTCTGTTTAGTTTGTGGATAATA
ACCAAGTAATCCAGAAACTTCAAGATGCTGAGTATACCGCCGCTTTGTTT
TAAGATTATTCTTATGTTTTCTACAGTGCGGTAAGTTGTGCATCCCTGCG
TGTACCTTTTGGCTTGCTCTTGACTGTGACATTTTGTCCACGCCGCAATC
TCACATCGTAGATGCCGTCCTCCTGACGAAGCTGTCCTCGACAATCGATG
CGTGTATTGATTTCGCTACGTTGTTGTTGATGGTAGATTCCTTGCTCCTG
CATGAAGTGCACTCCACCCCTAACCTACCACACCCTTTACTCGACCTAAA
AAAGCTAATGTTGTGGTAGATAGGAATGGTAAAACGGGGTGAGACACAGT
TAGCAACGTGAGGAAGGGCGATTGGCTATCGGAGATCCCCTTAGTACGAA
CAAAGCTCCGTTATGTCGAGGATGCGTCAACTGTCCGACAACTGTGTCAT
GCAAAACTTATTTTCGCTCCCCCCCCCTTTACCCGACCACGCAGCAAATC
GCCATCAGCAGACATCACACCACCACCTGACGAAGTGTACGCAGCGAGCG
TTTTTGGAAACACGGGGAGCGGGGTTGGAGACAGTGGGATAGATCCATCT
CAGCCAACGGCCCCTCCCCTGGTTGTCGGTGAGTGTTTAATGCTCAGTTG
TCTTTGAGTTTGCTGGAATCCAGTGGGAAGGGGCCGGGCGAGTGAAGTTT
GTAAGAAGCCGTGCGTATACAGTCTTGTGAGTCACAAACCGCCGCGTATA
CTACAGTCGACTATCTGCTCTCGTTCGCTCTCAGTTTTCCGTTTAAGCTA
ATATTTTCAAGTGGATTCCGATCTGCGCTCAGGTGCTGTTTTCTGTCCTA
ATTGGCGTGCTGACGCTGTGACAAATGTATAGAAAATTAGTGGGGAGCGT
TGTACAGAAATGTAAAATGCTATCTGGTAACGCTCCACGCACGATTCATC
GAACATAACACAGTAAAAACAAGTTTTGGGTAAATTTTCAAGACGCGTAT
TTGTGGACTCCCTCTGCCAGCGAATTGCATTTAATTTCTGTTGAACGTGC
CAGTTTTTGAAAAATAATAATAACGAAGCGTTACAGGCGCGGTACAATAG
ATGGCCAATGGTGTTGCGCCAAATGAGGTCTCCCACGCCCGATATTGCAG
TCGTTTCGAGAATGGTTTCTCATGCGTGCAAGTTACCAAATTGCAGGAGC
ACGATGATTCTCTACACACAACGTCCTGGAGAGATGCATCACTCATTGAG
ACGACTGTCATCACATTAAGAGCATGCGTGCCTCATGGTATGGTCGGAAA
ATTGGTCCAGCGATAGCTCTTCTAGGTCGTGAGGGGAAAAGAGTACTTGT
CAGGGGTATGTACAGTACGTGTTAAAGTCATCTTCGCTCCTCCTTTTTTT
TGATCTCCACAGGGGACCATGTTAAAAAACCTCTGAAGAAGAACTTCACT
AATGCTTGTACCGGATGACATCGCCTCGGTTTTCGTGTGCCGGCTCTAAT
GCAATGTCTCCGTCGATTTGAGCTCGGCCATTCGTACGATCTCCACGCTG
GTTTCAATTTAGTCAATGTAGCCCGTCCACCAAAAGGCAATTGTACGTTG
AGTGCGTATATTAGCTCCACAGTTGCTACGGGTATCTATCTAGCAAAGGG
ACTTTCAAATATATTGTGACTGATATTATGAGCCACTCGCAATTTCACAG
TATACATATATATATATATTTTACAGTATGAAGTGCTTATGCTTAAACAT
GCATGGATTAATCTTTGAGAGAAGCGTGCGAGGATATTGTCGTAGATAGG
TGCCTACCGTCAAGTCCTCTCACCAATATATGCCATATCGTACTCAGGGC
ATTAATCGCTGTCTTGAAAATGAATGATCCAGCAGAGGCCTGCTGGGAAT
TTTGTATTGCTTGCCGGGGGATGGTACTATTCTGAGATATTAATATTGAA
GACACGGTATATGCTATCAGGTGCCAACGTCCCAGCCGTTTGGTCGTCAG
TGGAGCATGCGTCGAGATGTTGGTTGTGAATAGTAGTCGTAGTGGTGTTG
CGGCCATTTCACGTAAGATTTAGTGTACTGTGGCAGGTAGCGGGATTAAA
CTCCAGGATAATGACGTTTTCAAGCACCGCGGTACAGTCACGCCCGGCGG
GAAATATTTTATCGGGGTTATATTTTTTCGTCGATTAGATGATAACCGCG
TTATCACCACGGCAATTTTTCACGGCAGTCAAGAATCACTTTTCCGCGGT
AAATTGCCGCGCACGGTAATTCGCGCATAATCTGGCAGTCAGTTGGACTT
GAAGAAATGTACTTCCGCGGTTTCCCCCTGGTAAAATGTTTCTTTCTTGT
GTCACTATCGAAAAGACAATGTTCTCAACCCTGCTCTTGTTGTGCGCGTT
TCAACAATCCTCCGCAGTATTTTTCGTTAATTCTACCGAGGGAAGACCTT
GCAAATGATGAAGGACCTGATCAGAGTAGTAATCCAAGGGACCTTCAGGG
GGATCACAAAATTTTGCAAATATCAAATCATGATAAGATAAAAGAATCTT
CTCAAGATAGCCGGCTAGTTGCGCCGTGAAAAACCTTATACAAGCTGGGT
CTACCAATTCGCAGTTAAAACGGCAGAATCGGGCTGCTCAGCTTAGTTTA
TCGAAATTTTGTCCTGAAATTTTGGCACGTGATTTGCAACACATTCGCCG
AAAATTTCAAATAAGGTCGATTGTTTTTCGGGGTTTTGTTTTCGTCAAGT
TATGGCCAAAGGAAACATCCACATGAATCGACAGTCGTCCATATCTTGAC
GAAAACCCCCCGAAAAACAATCGATCTGTTTTGAATGTCTCGGCGAATGT
ATTGCAAATCACGTGTCCAAATTTCAGGACAAAATTCGATAAATTAAGCT
GAGCAGCTCGATTTTTCTACAGTGCCTATTGCGGTGTACGCAGTTGTACT
GTATTCATTTTGTACAAAACTGTATTGCGATGAGGAAGATTACGCTGATG
CTTGCATCGAGATTCAGGCCGGCGGGTAATATATGTTGGGCGGAGCTTTG
ACGTTGGCAGCATGCAGTGTACAATAGCCCGGTTGGAGTGAAACCGATAA
CTCTTCTGTATCAAATGAAACAATTCTTAGTCGTAGTCAACATCTATCGC
GTTATCCTTACGGGTACCAATTTGTACAAATACTAAGAAAAAAAATATAT
AATTTTTTACAGTATCCGATGTTCTGTCATTGTACAACACATTCAATCAC
AGCTACTTCTGTGACGGCAATTACCCAGTCTAGCTGAGGACACCGTACAC
TGTAATCCTCTACGAAAAAATCCAAGTAAGACCTTCACTGAATAGAATTT
TCGGCTGTCGGAATTGGTCATCGTGACAATGTGGAGACAGACGTTTTTCG
GACCGGGAATGAACGTGAACATGAGTAAATTGGGCAAGTGACTTTTATTA
ATAGGCAAGCTTAAGCTGTGATAAGCGTAGGCGAAGATAAATCGAGCTTT
TACAGCATTTTAAAGTCTGTTGTTAAATACCCGAAACCGGTTGATCTAAA
CTTGAGCAGGCAAAATGCTGGGATGACTCAAGTTTAGGGGTGAAAGGCCA
ATCAAAATCGGTTATAGCTGGATTTCTGCGAAATCTATTTAAGTAGGGGT
AGAGCACTGTGCAAGCGATGGAGAATTTTTTCTTACTGAACTTTGGCAAA
CTCCGAATACTAATTACGTATATTTAGGGTAGACAGAGTAAGAAAATATA
TTTGGAAGTGAGATGAAAAAAAGACAAGAACGATCAGGTAATCGATACAA
GCTAGGCTGACCAAGGAACCCATAATGTTTTGTACGATCTTATCTTCTCA
ACTACTACGGTTCATCTAAAAAAGAAAGCATTGTTGTAATCGGCCAATCA
ACGCGCATGTGCAGAGCCACGTGCCTAGCCCATTGAAGTTGGTTCTACAA
ATTTGAGGTTATGTCTACCCACTCCATGGTCGTTCAAGTCTCCATGCTCA
AACAACGAAAACTCGATACCTTTGCTACTCCCCCTCAATGCAGGGTGGGG
AACAGGTGACCTGTCGTCCGGCGGCATCGGCAACATTGGCGGCAGCAACA
GCTCCAATCGTAAACAACACCAAACGCCACAACACCAACAATCACATCAC
CACCAAACACCCCCTGGACCACCGATGAGCGGTTCACCCTCGCCACACCC
TCCGCCCAGCCAGGGTTTCCACCCCCCCATTCCCCCCGGGGACGCTTTTC
ACCTACCTCCACCTCAAGGAGGTGTGGCGTGTTGGCAAGGCATGCCTCCC
TTTGCCCCCCCGCCCCCCCCCTGCTATCCCTCCCCCGCTCAAGGACACTT
TCTGCCAGGGGACCCTCGAGGAGGACAACCCCCCCCGCTCCCTCATTACT
ATTACCCACCCCCCGCTCAACAGGGTTTCCATCGGAATGAAGGAGCCGGG
GGTGGGGCGGCAGGGGGTTGGGGGCAACAGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig332:25195..32527+ >mRNA_H-paniculata_contig332.8906.1 ID=mRNA_H-paniculata_contig332.8906.1|Name=mRNA_H-paniculata_contig332.8906.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig332:25195..32527+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGAAGGAACAAAGGACGATGCACAGGCGACACGGAAGAGGAAGCTGGC GGCATTGAAGGCGAGAAGACAAGAGAGCAACCTCGCGAACACCGCTTTAC AGGACGCGGCTCCTGGCACTTCGAGATGGAAGGAACAAAGGACGATGCAC AGGCGACACGGAAGAGGAAGCTGGCGGCATTGAAGGCGAGAAGACAAGAG AGCAACCTCGCGAACACCGCTTTACAGGACGCGGCTCCTGGCACTTCGAG CAAATCGCCATCAGCAGACATCACACCACCACCTGACGAAGTGTACGCAG CGAGCGTTTTTGGAAACACGGGGAGCGGGGTTGGAGACAGTGGGATAGAT CCATCTCAGCCAACGGCCCCTCCCCTGGTTGTCGCAAATCGCCATCAGCA GACATCACACCACCACCTGACGAAGTGTACGCAGCGAGCGTTTTTGGAAA CACGGGGAGCGGGGTTGGAGACAGTGGGATAGATCCATCTCAGCCAACGG CCCCTCCCCTGGTTGTCGGGTGGGGAACAGGTGACCTGTCGTCCGGCGGC ATCGGCAACATTGGCGGCAGCAACAGCTCCAATCGTAAACAACACCAAAC GCCACAACACCAACAATCACATCACCACCAAACACCCCCTGGACCACCGA TGAGCGGTTCACCCTCGCCACACCCTCCGCCCAGCCAGGGTTTCCACCCC CCCATTCCCCCCGGGGACGCTTTTCACCTACCTCCACCTCAAGGAGGTGT GGCGTGTTGGCAAGGCATGCCTCCCTTTGCCCCCCCGCCCCCCCCCTGCT ATCCCTCCCCCGCTCAAGGACACTTTCTGCCAGGGGACCCTCGAGGAGGA CAACCCCCCCCGCTCCCTCATTACTATTACCCACCCCCCGCTCAACAGGG TTTCCATCGGAATGAAGGAGCCGGGGGTGGGGCGGCAGGGGGTTGGGGGC AACAGGGGGGTGGGGAACAGGTGACCTGTCGTCCGGCGGCATCGGCAACA TTGGCGGCAGCAACAGCTCCAATCGTAAACAACACCAAACGCCACAACAC CAACAATCACATCACCACCAAACACCCCCTGGACCACCGATGAGCGGTTC ACCCTCGCCACACCCTCCGCCCAGCCAGGGTTTCCACCCCCCCATTCCCC CCGGGGACGCTTTTCACCTACCTCCACCTCAAGGAGGTGTGGCGTGTTGG CAAGGCATGCCTCCCTTTGCCCCCCCGCCCCCCCCCTGCTATCCCTCCCC CGCTCAAGGACACTTTCTGCCAGGGGACCCTCGAGGAGGACAACCCCCCC CGCTCCCTCATTACTATTACCCACCCCCCGCTCAACAGGGTTTCCATCGG AATGAAGGAGCCGGGGGTGGGGCGGCAGGGGGTTGGGGGCAACAGGGG back to top
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