mRNA_H-paniculata_contig33188.8902.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33188.8902.1
Unique NamemRNA_H-paniculata_contig33188.8902.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: PSBA_ECTSI (Photosystem II protein D1 n=1129 Tax=Eukaryota TaxID=2759 RepID=PSBA_ECTSI)

HSP 1 Score: 708 bits (1827), Expect = 2.280e-257
Identity = 351/368 (95.38%), Postives = 357/368 (97.01%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVIG 1104
            MVA+LERRE EKRDWGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFL+GVA +MGREWELSYR       LGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILM PFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVES+NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV+G
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLIGVACWMGREWELSYR-------LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMRPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVVG 360
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: A0A1N7TJI8_9PHAE (Photosystem II protein D1 n=412 Tax=Eukaryota TaxID=2759 RepID=A0A1N7TJI8_9PHAE)

HSP 1 Score: 703 bits (1815), Expect = 1.540e-255
Identity = 343/368 (93.21%), Postives = 356/368 (96.74%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVIG 1104
            MVA+LERRE EKRDWGTFATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA SIEEWLYNGGPYQL+VFHFL+GVA +MGREWELSYR       LGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVES+NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPV+ IWLT+LG+STMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNE+LPVA+SAPS++G
Sbjct:    1 MVATLERRE-EKRDWGTFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEALSIEEWLYNGGPYQLVVFHFLIGVACWMGREWELSYR-------LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVIAIWLTSLGISTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEVLPVAVSAPSIVG 360
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: PSBA_PHATC (Photosystem II protein D1 n=590 Tax=root TaxID=1 RepID=PSBA_PHATC)

HSP 1 Score: 671 bits (1732), Expect = 6.870e-243
Identity = 330/368 (89.67%), Postives = 345/368 (93.75%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVIG 1104
            M A+LERR++    W  F  WITSTENRLYIGWFGCLMFPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNII+GAVIPSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIV HFLLGVASYMGREWELSYR       LGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+GVSTMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP+V G
Sbjct:    1 MTATLERRQSVSL-WERFCGWITSTENRLYIGWFGCLMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIITGAVIPSSNAIGIHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYR-------LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGVSTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: A0A023JEK8_9STRA (Photosystem II protein D1 n=4 Tax=Bacillariophyta TaxID=2836 RepID=A0A023JEK8_9STRA)

HSP 1 Score: 659 bits (1700), Expect = 5.160e-238
Identity = 322/368 (87.50%), Postives = 342/368 (92.93%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVIG 1104
            M A+LERRE+    W  F  WITSTENRLYIGWFGC+MFPTLLTA SCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIGIH YPIWEAASI+EWLYNGGPYQLIV HF +GV +YMGREWELSYR       LGMRPWIFVAFSAPVAAA+AVF++YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET+E ES ++GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTA+G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLGMEVMHERNAHNFPLDLAS E+LPVA++AP+V G
Sbjct:    1 MTATLERRESVSL-WERFCGWITSTENRLYIGWFGCVMFPTLLTATSCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGIHLYPIWEAASIDEWLYNGGPYQLIVLHFFIGVCTYMGREWELSYR-------LGMRPWIFVAFSAPVAAAAAVFVVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESPDFGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGMEVMHERNAHNFPLDLASGEVLPVALTAPAVNG 360
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: A0A7S2RD40_9STRA (Photosystem II protein D1 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RD40_9STRA)

HSP 1 Score: 654 bits (1687), Expect = 7.730e-236
Identity = 318/368 (86.41%), Postives = 341/368 (92.66%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVIG 1104
            M A+LERRE+    W  F +WITSTENRLYIGWFG +M PTLLTA SC+II FIAAPPVDIDGIREPVAGSL+YGNNIISGAVIPSSNAIG+HFYPIWEAAS++EWLYNGGPYQLIV HFLLGVASYMGREWELSYR       LGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET++ ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPV+GIW+TA+G+STMAFNLNGFNFNQSVVDSEGRVINTWADI+NRADLG+EVMHERNAHNFPLDLA+ E+ PVA+SAP+V G
Sbjct:   13 MTATLERRESISL-WERFCSWITSTENRLYIGWFGVVMIPTLLTATSCFIIGFIAAPPVDIDGIREPVAGSLMYGNNIISGAVIPSSNAIGVHFYPIWEAASVDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYR-------LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTDSESTNNGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVLGIWITAMGISTMAFNLNGFNFNQSVVDSEGRVINTWADILNRADLGIEVMHERNAHNFPLDLAAGEVFPVAVSAPAVNG 372
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: A0A451FLR3_9STRA (Photosystem II protein D1 n=179 Tax=Eukaryota TaxID=2759 RepID=A0A451FLR3_9STRA)

HSP 1 Score: 646 bits (1667), Expect = 5.510e-233
Identity = 316/366 (86.34%), Postives = 337/366 (92.08%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 1098
            M A+LERRE     W  F +WITSTENRLYIGWFG LM P LLTA SC+II FIAAPPVDIDGIREPVAGSLLYGNNIISGA++PSSNAIGIHFYPIWEAAS++EWLYNGGPYQLIVFHFLLGVA +MGREWELSYR       LGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRET +  S NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLA WPVVGIWLTALG+STMAFNLNGFNFNQSVVDS+GRVINTWADI+NRA+LG+EVMHERNAHNFPLDLA + +LPVA++AP+V
Sbjct:    1 MTATLERREGTSL-WERFCSWITSTENRLYIGWFGVLMIPLLLTATSCFIIGFIAAPPVDIDGIREPVAGSLLYGNNIISGAIVPSSNAIGIHFYPIWEAASLDEWLYNGGPYQLIVFHFLLGVACWMGREWELSYR-------LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETEDGVSANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAIWPVVGIWLTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLAVSNVLPVALNAPAV 358
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: Q5SFY7_9PHAE (Photosystem II protein D1 (Fragment) n=10 Tax=Phaeophyceae TaxID=2870 RepID=Q5SFY7_9PHAE)

HSP 1 Score: 637 bits (1644), Expect = 3.810e-230
Identity = 312/326 (95.71%), Postives = 317/326 (97.24%), Query Frame = 1 
Query:   40 DWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVM 1017
            DWG FATWITSTENRLYIGWFGCLM PTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAAS+EEWLYNGGPYQLIVFHFLLGVASYMGREWELSYR       LGMRPWIFVAFSAPVAAASAVFL+YPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSE+ES+NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLT+LGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVM
Sbjct:    1 DWGHFATWITSTENRLYIGWFGCLMIPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASVEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYR-------LGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSELESVNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTSLGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVM 319
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: A0A7S3LAS1_9STRA (Photosystem II protein D1 n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LAS1_9STRA)

HSP 1 Score: 640 bits (1652), Expect = 8.430e-230
Identity = 314/366 (85.79%), Postives = 335/366 (91.53%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 1098
            M  SL ++E EK  W  F+ WITST+NRLYIGWFG LMFPTLL A +C+I AFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+H YP+WEAASI+EWLYNGGPYQLIV HFLLGVASYMGREWELSYR       LGMRPWIF AFSAPVAAA+AVFL YPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHMAGVA VFG SLFSAMHGSLVTSSLIRET+E ES N GYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTA+G+STMAFNLNGFNFNQSVVDS+GRVINTWADIINRADLG+EVMHERNAHNFPLDLAS +++PVA+ APSV
Sbjct:   57 MPDSLAKKE-EKSTWEKFSNWITSTDNRLYIGWFGTLMFPTLLAATACFITAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGMHLYPMWEAASIDEWLYNGGPYQLIVLHFLLGVASYMGREWELSYR-------LGMRPWIFTAFSAPVAAATAVFLTYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAAVFGASLFSAMHGSLVTSSLIRETTENESTNAGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTAMGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRADLGIEVMHERNAHNFPLDLASGDMIPVAMEAPSV 414
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: PSBA_EMIHU (Photosystem II protein D1 n=71 Tax=root TaxID=1 RepID=PSBA_EMIHU)

HSP 1 Score: 638 bits (1646), Expect = 8.720e-230
Identity = 311/366 (84.97%), Postives = 334/366 (91.26%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSV 1098
            M  +LERRE+    W  F  WITSTENRLYIGWFGCLMFPTLL+A S YIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAASI+EWLYNGG YQL+V HF +GV +Y+GREWELSYR       LGMRPWI VAFSAPVAAA+AVF+IYPIGQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSLIRET+E ES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFL AWPVVGIW TA+GV+TMAFNLNGFNFNQSVVDS+GRVINTWADI+NR++LGMEVMHERNAHNFPLDLA+ E LPVA+ AP+V
Sbjct:    1 MTTTLERRESASF-WEQFCAWITSTENRLYIGWFGCLMFPTLLSAISAYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGVHFYPIWEAASIDEWLYNGGTYQLVVLHFFIGVCAYIGREWELSYR-------LGMRPWICVAFSAPVAAAAAVFVIYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLGAWPVVGIWFTAMGVATMAFNLNGFNFNQSVVDSQGRVINTWADILNRSNLGMEVMHERNAHNFPLDLAAGESLPVALVAPAV 358
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BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Match: A0A8J7E2H2_9CYAN (Photosystem II protein D1 n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7E2H2_9CYAN)

HSP 1 Score: 637 bits (1643), Expect = 2.500e-229
Identity = 306/368 (83.15%), Postives = 336/368 (91.30%), Query Frame = 1 
Query:    1 MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEAASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYRXXXXXXRLGMRPWIFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVSTMAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLDLASNEILPVAISAPSVIG 1104
            M  +L  RE+E   WG F  WITST NRLY+GWFG LM PTLLTA  C++IAF+AAPPVDIDGIREPVAGSLLYGNNIISGAV+PSSNAIG+HFYPIWEAAS++EWLYNGGPYQLI+FHFL+GV SY+GR+WELSYR       LGMRPWI VA+SAPV+AASAVFLIYP+GQGSFSDGMPLGISGTFNFM+VFQAEHNILMHPFHM GVAGVFGGSLFSAMHGSLVTSSL++ET+EVES NYGYKFGQEEETYNIVAAHGYFGRLIFQYASF+NSRALHFFLAAWPVVGIW TALGVSTMAFNLNGFNFNQSV+DS+GRV+NTWADI+NRA+LG EVMHERNAHNFPLDLAS E  PVA++APS+ G
Sbjct:    1 MTTTLTTRESEST-WGRFCEWITSTNNRLYVGWFGVLMIPTLLTATICFLIAFVAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGLHFYPIWEAASLDEWLYNGGPYQLIIFHFLIGVFSYLGRQWELSYR-------LGMRPWICVAYSAPVSAASAVFLIYPMGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLVQETTEVESQNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFSNSRALHFFLAAWPVVGIWFTALGVSTMAFNLNGFNFNQSVLDSQGRVVNTWADILNRANLGFEVMHERNAHNFPLDLASAEAAPVALTAPSING 360
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33188.8902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PSBA_ECTSI2.280e-25795.38Photosystem II protein D1 n=1129 Tax=Eukaryota Tax... [more]
A0A1N7TJI8_9PHAE1.540e-25593.21Photosystem II protein D1 n=412 Tax=Eukaryota TaxI... [more]
PSBA_PHATC6.870e-24389.67Photosystem II protein D1 n=590 Tax=root TaxID=1 R... [more]
A0A023JEK8_9STRA5.160e-23887.50Photosystem II protein D1 n=4 Tax=Bacillariophyta ... [more]
A0A7S2RD40_9STRA7.730e-23686.41Photosystem II protein D1 n=1 Tax=Rhizochromulina ... [more]
A0A451FLR3_9STRA5.510e-23386.34Photosystem II protein D1 n=179 Tax=Eukaryota TaxI... [more]
Q5SFY7_9PHAE3.810e-23095.71Photosystem II protein D1 (Fragment) n=10 Tax=Phae... [more]
A0A7S3LAS1_9STRA8.430e-23085.79Photosystem II protein D1 n=2 Tax=Amphora coffeifo... [more]
PSBA_EMIHU8.720e-23084.97Photosystem II protein D1 n=71 Tax=root TaxID=1 Re... [more]
A0A8J7E2H2_9CYAN2.500e-22983.15Photosystem II protein D1 n=1 Tax=Lusitaniella cor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33188contigH-paniculata_contig33188:565..1671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score709.1
Seed ortholog evalue1e-201
Seed eggNOG ortholog2880.D1J6Z2
Preferred namepsbA
KEGG koko:K02703
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
EggNOG OGs28IP8@1,2QR09@2759
EC1.10.3.9
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Exons1
Model size1107
Cds size1107
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.2435853-CDS-H-paniculata_contig33188:564..16711622930026.2435853-CDS-H-paniculata_contig33188:564..1671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33188 565..1671 +
1691481115.8094795-CDS-H-paniculata_contig33188:564..16711691481115.8094795-CDS-H-paniculata_contig33188:564..1671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33188 565..1671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33188.8902.1prot_H-paniculata_contig33188.8902.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33188 565..1671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33188.8902.1

>prot_H-paniculata_contig33188.8902.1 ID=prot_H-paniculata_contig33188.8902.1|Name=mRNA_H-paniculata_contig33188.8902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=369bp
MVASLERRETEKRDWGTFATWITSTENRLYIGWFGCLMFPTLLTAASCYI
IAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVIPSSNAIGIHFYPIWEA
ASIEEWLYNGGPYQLIVFHFLLGVASYMGREWELSYREWELSYRLGMRPW
IFVAFSAPVAAASAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNI
LMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETSEVESINYGYKFGQE
EETYNIVAAHGYFGRLIFQYASFNNSRALHFFLAAWPVVGIWLTALGVST
MAFNLNGFNFNQSVVDSEGRVINTWADIINRADLGMEVMHERNAHNFPLD
LASNEILPVAISAPSVIG*
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mRNA from alignment at H-paniculata_contig33188:565..1671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33188.8902.1 ID=mRNA_H-paniculata_contig33188.8902.1|Name=mRNA_H-paniculata_contig33188.8902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1107bp|location=Sequence derived from alignment at H-paniculata_contig33188:565..1671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGCAAGTTTAGAAAGACGCGAAACGGAAAAAAGAGATTGGGGAAC
ATTTGCTACATGGATCACTAGTACTGAAAATCGTTTATATATTGGTTGGT
TTGGTTGTTTAATGTTTCCTACATTATTAACAGCTGCTTCTTGTTATATT
ATTGCTTTTATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACC
AGTAGCTGGATCATTATTATACGGAAACAACATCATTAGTGGTGCTGTAA
TTCCTAGTTCTAATGCAATTGGTATTCATTTCTACCCAATTTGGGAAGCT
GCTTCAATTGAAGAATGGTTATACAATGGTGGTCCTTACCAATTAATCGT
ATTCCATTTCTTATTAGGTGTTGCTAGTTACATGGGTCGTGAATGGGAAC
TTAGTTACCGTGAATGGGAACTTAGTTACCGTTTAGGTATGCGTCCATGG
ATTTTCGTAGCATTTTCTGCTCCAGTAGCTGCAGCTTCAGCTGTATTTTT
AATCTACCCAATTGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTA
TTTCAGGTACTTTTAACTTCATGATTGTTTTCCAAGCTGAGCACAACATT
TTAATGCACCCATTCCACATGGCTGGTGTAGCTGGTGTATTTGGTGGTTC
TTTATTCAGTGCTATGCATGGTTCTTTAGTAACTTCAAGTTTAATTCGTG
AAACAAGCGAAGTAGAATCGATTAACTATGGTTACAAATTTGGACAAGAA
GAAGAAACTTATAACATTGTAGCTGCACATGGTTACTTTGGTCGTTTAAT
TTTCCAATATGCTAGTTTTAACAACTCTCGAGCTTTACATTTCTTCCTTG
CAGCATGGCCTGTAGTTGGTATTTGGTTAACAGCTCTTGGGGTTAGTACT
ATGGCATTTAATTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGATAG
TGAAGGTCGTGTGATTAACACATGGGCTGATATTATTAACCGTGCAGACT
TAGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTTTAGAT
TTAGCATCTAATGAAATTCTTCCTGTAGCAATTTCTGCTCCATCTGTTAT
TGGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig33188:565..1671+

>mRNA_H-paniculata_contig33188.8902.1 ID=mRNA_H-paniculata_contig33188.8902.1|Name=mRNA_H-paniculata_contig33188.8902.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2214bp|location=Sequence derived from alignment at H-paniculata_contig33188:565..1671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGCAAGTTTAGAAAGACGCGAAACGGAAAAAAGAGATTGGGGAAC
ATTTGCTACATGGATCACTAGTACTGAAAATCGTTTATATATTGGTTGGT
TTGGTTGTTTAATGTTTCCTACATTATTAACAGCTGCTTCTTGTTATATT
ATTGCTTTTATAGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACC
AGTAGCTGGATCATTATTATACGGAAACAACATCATTAGTGGTGCTGTAA
TTCCTAGTTCTAATGCAATTGGTATTCATTTCTACCCAATTTGGGAAGCT
GCTTCAATTGAAGAATGGTTATACAATGGTGGTCCTTACCAATTAATCGT
ATTCCATTTCTTATTAGGTGTTGCTAGTTACATGGGTCGTGAATGGGAAC
TTAGTTACCGTGAATGGGAACTTAGTTACCGTTTAGGTATGCGTCCATGG
ATTTTCGTAGCATTTTCTGCTCCAGTAGCTGCAGCTTCAGCTGTATTTTT
AATCTACCCAATTGGTCAAGGTAGTTTCTCTGATGGTATGCCATTAGGTA
TTTCAGGTACTTTTAACTTCATGATTGTTTTCCAAGCTGAGCACAACATT
TTAATGCACCCATTCCACATGGCTGGTGTAGCTGGTGTATTTGGTGGTTC
TTTATTCAGTGCTATGCATGGTTCTTTAGTAACTTCAAGTTTAATTCGTG
AAACAAGCGAAGTAGAATCGATTAACTATGGTTACAAATTTGGACAAGAA
GAAGAAACTTATAACATTGTAGCTGCACATGGTTACTTTGGTCGTTTAAT
TTTCCAATATGCTAGTTTTAACAACTCTCGAGCTTTACATTTCTTCCTTG
CAGCATGGCCTGTAGTTGGTATTTGGTTAACAGCTCTTGGGGTTAGTACT
ATGGCATTTAATTTAAATGGTTTTAACTTTAACCAATCTGTTGTTGATAG
TGAAGGTCGTGTGATTAACACATGGGCTGATATTATTAACCGTGCAGACT
TAGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTTTAGAT
TTAGCATCTAATGAAATTCTTCCTGTAGCAATTTCTGCTCCATCTGTTAT
TGGGTAAATGGTTGCAAGTTTAGAAAGACGCGAAACGGAAAAAAGAGATT
GGGGAACATTTGCTACATGGATCACTAGTACTGAAAATCGTTTATATATT
GGTTGGTTTGGTTGTTTAATGTTTCCTACATTATTAACAGCTGCTTCTTG
TTATATTATTGCTTTTATAGCTGCTCCTCCAGTAGATATTGATGGTATTC
GTGAACCAGTAGCTGGATCATTATTATACGGAAACAACATCATTAGTGGT
GCTGTAATTCCTAGTTCTAATGCAATTGGTATTCATTTCTACCCAATTTG
GGAAGCTGCTTCAATTGAAGAATGGTTATACAATGGTGGTCCTTACCAAT
TAATCGTATTCCATTTCTTATTAGGTGTTGCTAGTTACATGGGTCGTGAA
TGGGAACTTAGTTACCGTGAATGGGAACTTAGTTACCGTTTAGGTATGCG
TCCATGGATTTTCGTAGCATTTTCTGCTCCAGTAGCTGCAGCTTCAGCTG
TATTTTTAATCTACCCAATTGGTCAAGGTAGTTTCTCTGATGGTATGCCA
TTAGGTATTTCAGGTACTTTTAACTTCATGATTGTTTTCCAAGCTGAGCA
CAACATTTTAATGCACCCATTCCACATGGCTGGTGTAGCTGGTGTATTTG
GTGGTTCTTTATTCAGTGCTATGCATGGTTCTTTAGTAACTTCAAGTTTA
ATTCGTGAAACAAGCGAAGTAGAATCGATTAACTATGGTTACAAATTTGG
ACAAGAAGAAGAAACTTATAACATTGTAGCTGCACATGGTTACTTTGGTC
GTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGAGCTTTACATTTC
TTCCTTGCAGCATGGCCTGTAGTTGGTATTTGGTTAACAGCTCTTGGGGT
TAGTACTATGGCATTTAATTTAAATGGTTTTAACTTTAACCAATCTGTTG
TTGATAGTGAAGGTCGTGTGATTAACACATGGGCTGATATTATTAACCGT
GCAGACTTAGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCC
TTTAGATTTAGCATCTAATGAAATTCTTCCTGTAGCAATTTCTGCTCCAT
CTGTTATTGGGTAA
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