mRNA_H-paniculata_contig33184.8901.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33184.8901.1
Unique NamemRNA_H-paniculata_contig33184.8901.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A6H5KNX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX7_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 1.110e-48
Identity = 83/99 (83.84%), Postives = 92/99 (92.93%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            R+VTLLGQNVDAYGRDM PR  FADLLHYV+DVPGIER+RFVTSHPRYMSL VV+AVA LP+MAECFMVPFQSGDNEVL+NMRRGYT+  YMRII+RI+
Sbjct:  481 REVTLLGQNVDAYGRDMNPRNSFADLLHYVSDVPGIERVRFVTSHPRYMSLDVVDAVANLPSMAECFMVPFQSGDNEVLKNMRRGYTITRYMRIIDRIR 579          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7S2V0W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0W1_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.000e-47
Identity = 78/99 (78.79%), Postives = 90/99 (90.91%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            R++TLLGQN+DAYGRDM P+Q FADLLHYV+DVPGIERIRFVTSHPRYMSL+VV+AVA LP M E F VPFQSGD++VL+NM RGYTV+ YM+IINRIK
Sbjct:  105 REITLLGQNIDAYGRDMQPKQTFADLLHYVSDVPGIERIRFVTSHPRYMSLKVVDAVASLPTMCENFYVPFQSGDDQVLKNMGRGYTVDRYMQIINRIK 203          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A835YXD9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXD9_9STRA)

HSP 1 Score: 155 bits (391), Expect = 8.970e-43
Identity = 74/99 (74.75%), Postives = 87/99 (87.88%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            R++TLLGQN+DAYGRDM P+Q FADLLHY+ DV GIERIR+VTSHPRYMS RVV+AVA L  + EC+ VPFQSGD+EVLR MRRGYT ++YMRII+RIK
Sbjct:  255 REITLLGQNIDAYGRDMSPKQTFADLLHYLNDVEGIERIRYVTSHPRYMSERVVDAVANLDKVCECYHVPFQSGDDEVLRRMRRGYTHDSYMRIIDRIK 353          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7S1KEP4_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1KEP4_9ALVE)

HSP 1 Score: 148 bits (374), Expect = 3.760e-42
Identity = 67/99 (67.68%), Postives = 89/99 (89.90%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            ++VTLLGQN+D++GRDM P+++F+DLLH+VAD PG+ERIRFVTSHPRY+S RVV+AVA+ P++ E F +PFQ+GDNEVLRNMRRGYT E Y+ +I+RI+
Sbjct:   57 KEVTLLGQNIDSWGRDMHPKRKFSDLLHHVADTPGVERIRFVTSHPRYISERVVDAVAEHPSLMEYFHIPFQAGDNEVLRNMRRGYTRERYLHVIDRIR 155          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7S4DL29_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL29_HETAK)

HSP 1 Score: 151 bits (381), Expect = 4.400e-41
Identity = 71/99 (71.72%), Postives = 86/99 (86.87%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            R++TLLGQN+DAYGRDM P+Q FADLLHYVA VPGI R+R+VTSHPRYMS RVV+AVA LP + ECF VP QSG ++VL+ MRRGYTVE Y++I++RIK
Sbjct:  295 REITLLGQNIDAYGRDMAPKQSFADLLHYVAAVPGIARVRYVTSHPRYMSERVVDAVAALPGVMECFYVPPQSGSDKVLKLMRRGYTVEKYLKIVDRIK 393          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7S2AZH5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZH5_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.240e-40
Identity = 70/105 (66.67%), Postives = 86/105 (81.90%), Query Frame = 1
Query:    1 LCTSVKRKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            L  S  +++TLLGQN+DA+GRDM P+Q+F+DLL +VADVPGIER+RFVTSHPRYMS RVV+AVA  P + E F VPFQSGDN VL  MRRGYT E Y++I+ RI+
Sbjct:   94 LAKSGYKEITLLGQNIDAWGRDMSPKQKFSDLLLHVADVPGIERVRFVTSHPRYMSDRVVDAVASEPKLCEVFHVPFQSGDNTVLARMRRGYTRERYLQIVKRIR 198          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7R9VDU1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VDU1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 7.590e-40
Identity = 70/101 (69.31%), Postives = 86/101 (85.15%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVAD--VPG-IERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRI 312
            ++VTLLGQN+DAYGRDMVPR+ FADLLHY+ D   PG IER+R+VTSHPRY S RV++AVA L  + ECF +PFQSGDN VL++MRRGYT E+YMRII++I
Sbjct:  150 KEVTLLGQNIDAYGRDMVPRRTFADLLHYLNDNLPPGTIERVRYVTSHPRYFSDRVIDAVANLDKVCECFHMPFQSGDNGVLKDMRRGYTFESYMRIISKI 250          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A0G4ERE5_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4ERE5_VITBC)

HSP 1 Score: 148 bits (374), Expect = 1.400e-39
Identity = 67/99 (67.68%), Postives = 89/99 (89.90%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            ++VTLLGQN+D++GRDM P+++F+DLLH+VAD PG+ERIRFVTSHPRY+S RVV+AVA+ P++ E F +PFQ+GDNEVLRNMRRGYT E Y+ +I+RI+
Sbjct:  383 KEVTLLGQNIDSWGRDMHPKRKFSDLLHHVADTPGVERIRFVTSHPRYISERVVDAVAEHPSLMEYFHIPFQAGDNEVLRNMRRGYTRERYLHVIDRIR 481          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7S1FRF9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FRF9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.040e-39
Identity = 66/99 (66.67%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIK 315
            ++VTLLGQN+DAYGRDM P+  FADLL+   +V GIER+R+VTSHPRY S RV++AVA L  + ECF VPFQ+GD+EVLR MRRGYT ++YM+IIN+IK
Sbjct:   35 KEVTLLGQNIDAYGRDMSPKTTFADLLYAANNVQGIERVRYVTSHPRYFSDRVIDAVANLDKVCECFHVPFQAGDDEVLRRMRRGYTFDSYMKIINKIK 133          
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Match: A0A7S3DWS7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DWS7_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.340e-37
Identity = 64/101 (63.37%), Postives = 85/101 (84.16%), Query Frame = 1
Query:   19 RKVTLLGQNVDAYGRDMVPRQRFADLLHYV-ADVPGIERIRFVTSHPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRIINRIKA 318
            ++VTLLGQN+DAYGRDMVP++ FA LL ++ A++P   R+R+VTSHPRY S RV++AVA L  + ECF VPFQ+GD+EVLR MRRGYT ++YMRII++I+A
Sbjct:    1 KEVTLLGQNIDAYGRDMVPKRTFAQLLEFLNANIPKKMRLRYVTSHPRYFSDRVIDAVANLDKVCECFHVPFQAGDDEVLRQMRRGYTFDSYMRIIDKIRA 101          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33184.8901.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNX7_9PHAE1.110e-4883.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2V0W1_9STRA1.000e-4778.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YXD9_9STRA8.970e-4374.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1KEP4_9ALVE3.760e-4267.68Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A7S4DL29_HETAK4.400e-4171.72Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2AZH5_9STRA2.240e-4066.67Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7R9VDU1_9STRA7.590e-4069.31Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A0G4ERE5_VITBC1.400e-3967.68Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7S1FRF9_9STRA2.040e-3966.67Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S3DWS7_9STRA1.340e-3763.37Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33184contigH-paniculata_contig33184:163..1220 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.2
Seed ortholog evalue5.6e-31
Seed eggNOG ortholog2850.Phatr18877
Hectar predicted targeting categoryother localisation
EggNOG free text desc.TRAM domain
EggNOG OGs2XANM@2836,COG0621@1,KOG2492@2759
COG Functional cat.T
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.1900885-CDS-H-paniculata_contig33184:162..2341622930026.1900885-CDS-H-paniculata_contig33184:162..234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33184 163..234 -
1691481115.787213-CDS-H-paniculata_contig33184:162..2341691481115.787213-CDS-H-paniculata_contig33184:162..234Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33184 163..234 -
1622930026.2016895-CDS-H-paniculata_contig33184:971..12201622930026.2016895-CDS-H-paniculata_contig33184:971..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33184 972..1220 -
1691481115.7997105-CDS-H-paniculata_contig33184:971..12201691481115.7997105-CDS-H-paniculata_contig33184:971..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33184 972..1220 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33184.8901.1prot_H-paniculata_contig33184.8901.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33184 163..1220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33184.8901.1

>prot_H-paniculata_contig33184.8901.1 ID=prot_H-paniculata_contig33184.8901.1|Name=mRNA_H-paniculata_contig33184.8901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
LCTSVKRKVTLLGQNVDAYGRDMVPRQRFADLLHYVADVPGIERIRFVTS
HPRYMSLRVVEAVAKLPAMAECFMVPFQSGDNEVLRNMRRGYTVETYMRI
INRIKAV
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mRNA from alignment at H-paniculata_contig33184:163..1220-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33184.8901.1 ID=mRNA_H-paniculata_contig33184.8901.1|Name=mRNA_H-paniculata_contig33184.8901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1058bp|location=Sequence derived from alignment at H-paniculata_contig33184:163..1220- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGCACCTCGGTCAAACGAAAGGTCACCCTGCTCGGGCAGAACGTTGA CGCGTACGGGCGGGATATGGTGCCCAGGCAGAGGTTTGCCGACCTCTTAC ACTACGTGGCCGATGTGCCTGGCATCGAACGCATCCGTTTCGTGACAAGT CACCCGCGGTACATGAGCCTGAGGGTTGTCGAGGCCGTGGCGAAGCTGCC TGCGATGGCGGAGTGCTTCATGGTGCCGTTCCAGAGCGGGGATAACGAGG TGTATCATTTGTTAGTACTAGGTGTTACCGCATACATGACCTTGTTGTTG TTGTTGTTGTTGTTGTTGTTAAGAGACACCACAAAATCCAGATACAACGT CGTTGCTACTTTCGTTCTCGTTTTTGTTTTTCGTGGTTTGTTTCCACTCA AAGGAGTGCCCCAACTCTCTCTCGAAACCAATAGTAGGAGTATTTGCCTC TGACAGTTGGCAGCCCAATGCCACCCCAAGACGAAGCCTCCAACGTTTGG TGGTGTGAGGGTAGAGAACGATTATTACCATTATGTTTGGAGAGTGGCTC GGGTAATTCCTACGTGTATACAATGCTCGGTAGTACTCTGTGGCACACGG GAGTTGTTGACATAAGCTATGATGTACCTATTGGAGTACAACAACGATTT TCTTTTTTAGTAAAACAGAAAAGGTGAAGACAAACAGTTATCCAGTATGT GGGAACTCGCATCTTGGGTCTGGCTCAAAAGACCTAGAAATAGCGTTACG AATGGCATGGTCCGAAATTTCAATCGCTTGTACGTTCAATGTATTGACAT TACTGAAGGGCCGCCAGTTGAGCACGATTTCTTACGGTACGTTTTGTGAC GTTACCAAGAAAATGAGCATCAATCTTTGTGTCGTGATTTCTTGAGAGCG GACCGCTAAAGCTGGAGTGTCGGATCGATCCGTTGTTAACCCATTCTCCC CTTCCCCGTCTCTTCCTCTCTCCTCGCTGGCCGTAGGTCCTGAGGAACAT GCGCAGAGGCTATACTGTGGAAACCTACATGCGAATCATAAACCGCATCA AGGCGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig33184:163..1220-

>mRNA_H-paniculata_contig33184.8901.1 ID=mRNA_H-paniculata_contig33184.8901.1|Name=mRNA_H-paniculata_contig33184.8901.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig33184:163..1220- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCTGCACCTCGGTCAAACGAAAGGTCACCCTGCTCGGGCAGAACGTTGA
CGCGTACGGGCGGGATATGGTGCCCAGGCAGAGGTTTGCCGACCTCTTAC
ACTACGTGGCCGATGTGCCTGGCATCGAACGCATCCGTTTCGTGACAAGT
CACCCGCGGTACATGAGCCTGAGGGTTGTCGAGGCCGTGGCGAAGCTGCC
TGCGATGGCGGAGTGCTTCATGGTGCCGTTCCAGAGCGGGGATAACGAGC
TCTGCACCTCGGTCAAACGAAAGGTCACCCTGCTCGGGCAGAACGTTGAC
GCGTACGGGCGGGATATGGTGCCCAGGCAGAGGTTTGCCGACCTCTTACA
CTACGTGGCCGATGTGCCTGGCATCGAACGCATCCGTTTCGTGACAAGTC
ACCCGCGGTACATGAGCCTGAGGGTTGTCGAGGCCGTGGCGAAGCTGCCT
GCGATGGCGGAGTGCTTCATGGTGCCGTTCCAGAGCGGGGATAACGAGGT
CCTGAGGAACATGCGCAGAGGCTATACTGTGGAAACCTACATGCGAATCA
TAAACCGCATCAAGGCGGTAGTCCTGAGGAACATGCGCAGAGGCTATACT
GTGGAAACCTACATGCGAATCATAAACCGCATCAAGGCGGTA
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