mRNA_H-paniculata_contig3315.8896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3315.8896.1
Unique NamemRNA_H-paniculata_contig3315.8896.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI)

HSP 1 Score: 240 bits (612), Expect = 1.300e-68
Identity = 124/238 (52.10%), Postives = 166/238 (69.75%), Query Frame = 1
Query:  118 VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLT--VDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTA----LATTDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            V VDM PCILA  ++EKDVG V+ AYLFN F+KGFWTA+QN+QAP   VLDL   +D +HG+CN +++GIVP+AAQ  QL++YS +F VR+VYFD ADT  D  +  +LG Q  F  P   APR+K T  G +  S+ P+ +++DP+++NLF RP++        GV+  +A+YAD +G      LA      SAAIV ++G +G+EEMHVF SLAWFD GSWAW H+I+EW T+GIF
Sbjct:  604 VQVDMVPCILASESVEKDVGPVASAYLFNEFYKGFWTATQNVQAPPAAVLDLVEALDADHGKCNVVYVGIVPSAAQKQQLQDYSRKFNVRIVYFDAADTILDTEVQARLGMQSNFDQPFVGAPRVKRT--GGSADSIAPADMLTDPSQNNLFNRPVVTTVDTLPAGVSI-MAQYADENGDVIAGVLAGVTNPESAAIVEYIGTDGLEEMHVFVSLAWFDTGSWAWGHFISEWGTRGIF 838          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 5.650e-60
Identity = 109/233 (46.78%), Postives = 150/233 (64.38%), Query Frame = 1
Query:  118 VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFS-AGDGTGVATAVAEYADTSGTALATTDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            V VD+QPCILAPS + +D G   DAY+ + F+KG+W A Q          +LT     G+CN +++GI  T AQ VQL++YS  FKVR+VYF+ A+TAND  + ++LG  Q F+ P+  AP I L   G     VVPSTL+++P E N+F RP++  + A  G G AT +AEY D SG  + ++   PS A + +   +G EE+H+FFS+AWFD GSWAWAH+  EW TKG+F
Sbjct:   36 VTVDLQPCILAPSKITQDNGDTPDAYVTSTFYKGYWGAKQ---VTLTGTSELTNSLTSGKCNVVYVGIPVTEAQKVQLQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIALATGGAAVARVVPSTLVTNPREFNIFTRPVLVTNLATTGNGTATVMAEYVDDSGANVPSSLSFPSVAAMAYASNDGYEELHLFFSVAWFDTGSWAWAHFFIEWGTKGVF 265          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: A0A6H5K730_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K730_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.420e-49
Identity = 112/253 (44.27%), Postives = 155/253 (61.26%), Query Frame = 1
Query:  115 EVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDV-LDLTVDT--NHGRCNSIFIGIVPTA------AQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTALATTDG-----------SPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            ++ VD++PCI+  + +E+DV +VS+AYL +  FKGFW ASQ++    GD   DL  D   NHG+C++IFIG  P+       AQ  QL  YS +F+VRLV+FD A+TAN A +  K+G QQYF+  +  A  I+L  +      VV   L +DP+E  +F RP ++ S     G  T VA+  D+ G +++ TDG             S A VT+ G +G EEMHVFF++AWF M SWAWAHYI EWAT+G+F
Sbjct:   26 DIKVDLRPCIITKAAIEQDVSTVSEAYLLSELFKGFWAASQHVIIDTGDGDFDLLNDGDGNHGKCSAIFIGSQPSVGEDGATAQYEQLLAYSAKFQVRLVFFDNAETANLATITTKIGIQQYFSDTLLAAAGIRLKDSDAR---VVNPALQTDPSE--IFFRP-VRVSGDPTGGERTIVADLVDSDGQSISDTDGIWDPSSTMETPGASMAAVTFKGEDGSEEMHVFFAMAWFHMESWAWAHYIMEWATQGVF 272          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 9.080e-45
Identity = 103/239 (43.10%), Postives = 132/239 (55.23%), Query Frame = 1
Query:  109 PTEVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTA----LATTDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            P  V VDM PCILA   +EKD G V+ AYLFN FFKGFWTA+Q                                              VR+VYFD+ADT  D  +  +LG Q  F  P   APR+K T  G +  S+ P+ +++DPT++NLF RP++        GV+  +A+YAD +G A    LA      SAAIV ++GA+G+EEMHVF SLAWFD GSWAW H+I+EW T+GIF
Sbjct:  636 PGPVQVDMVPCILASEAVEKDAGPVASAYLFNEFFKGFWTATQ----------------------------------------------VRIVYFDIADTILDTEVQARLGMQSNFDQPFVGAPRVKRT--GGSTDSIAPADMLTDPTQNNLFNRPVVTTVDTLPAGVSI-LAQYADDNGDAIGGVLAGVTNPQSAAIVEYIGADGLEEMHVFISLAWFDTGSWAWGHFISEWGTRGIF 825          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.410e-37
Identity = 91/243 (37.45%), Postives = 135/243 (55.56%), Query Frame = 1
Query:  115 EVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVD----TNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPT--ESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTALAT--TDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            +VLVD+ PC+ +   +EK   +    Y+ + FFKG+W+    + + +   D+  L VD    T HG+CN++++G  P+  Q   L  YS +FKVRLVYF  A T   A    KLG Q YFA  I     ++L+  G    S+      +DP      LF  P+I     + TG+   +A+YAD++G    +       +AAI+++ GA+G EE+HVF ++ WFD G+W WAH+  EWATKGIF
Sbjct:  380 DVLVDLVPCLFSSVAVEKSNENNPALYIMSLFFKGYWSPRTEEYVVSETDDLTALLVDSSDTTPHGKCNAVYVGYAPSTDQVAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGIQTYFAGDIVTPAFVQLSDLGSTKVSITQPGFKTDPNLFTPALFSYPVIMNEVPE-TGIEV-LAQYADSAGEPYLSGAAGDQENAAILSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 620          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 1.300e-35
Identity = 102/283 (36.04%), Postives = 148/283 (52.30%), Query Frame = 1
Query:   10 GESYTCPDGFTVRPTSTCAGVPCTDTECCME-VIPTE--VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVDTN------HGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPT--ESNLFRRPMIQFSAGDGTGVATAVAEYAD-TSGTALATTDGSP-SAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            GES  C    T    STC G    D     + V P E  VLVD+ PC+ +   + +   +    Y+ + FFKG+W+    +++     D+  L VD++      HG+CN++++G  P+  Q   L  YS +FKVRLVYF  A T   A    KLG Q YFA  I     ++L+  G    S+      +DP      LF  P+I  +  D  G+   +A+Y D  S   L+   G   +AA++++ GA+G EE+HVFF++ WFD G+W WAH+  EWATKGIF
Sbjct:   37 GESDDCTYSCTGDSESTCGGRWAMDIFAMDDDVTPVEADVLVDLVPCLFSSVAVGESNENNPALYIMSLFFKGYWSPKTEEHVVKEGDDLTALLVDSSDTSEVPHGKCNAVYVGYAPSTDQAAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGVQTYFAGDITTPAFVQLSDLGGEKVSITKPGFKTDPNLFTPALFSYPVIINTVPDD-GIEV-LAQYVDGDSEPYLSGAAGDQENAAMLSYTGADGHEELHVFFTIGWFDAGAWPWAHFFNEWATKGIF 317          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 6.440e-35
Identity = 90/243 (37.04%), Postives = 134/243 (55.14%), Query Frame = 1
Query:  115 EVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVD----TNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPT--ESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTALAT--TDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            +VLVD+ PC+L  ST+     +    Y+ + FFKG+W+    + + +   D+  L VD    T HG+CN+++IG  P+ AQ   L  YS ++KVRLVY   A T   A    KLG Q YFA  I     ++L+  G    S+      +DP      LF  P+I  +A    G+   +A+Y D++G    +       +AA++++ GA+G EE+HVF ++ WFD G+W WAH+  EWATKGIF
Sbjct:  277 DVLVDLVPCLL--STVAIGESTNPGLYVMSLFFKGYWSPKTEEFVVSDTDDLTALLVDSTDATPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYLPSALTHTTAEFTTKLGIQTYFAGDIMTPAYVQLSALGDEKVSITQPGFQTDPNLFTPALFSYPVI-INAVPEAGIEV-LAQYVDSAGEPYLSGAAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 515          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.020e-33
Identity = 83/219 (37.90%), Postives = 121/219 (55.25%), Query Frame = 1
Query:  193 YLFNNFFKGFWT--ASQNIQAPAGDVLDLTVD----TNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQF----SAGDGTGVATAVAEYADTSGTALAT--TDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            Y+ + FFKG+W+    + + +   D+  L VD    T HG CN+++IG  P+ +Q   L  YS +FKVRLVYF  A T   A    KLG Q YFA  I     ++L+  G    S+      +DP   NLF  P+  +    +A    GV   +A+Y D++G    +       +AA++++ GA+G EE+HVF ++ WFD G+W WAH+  EWATKGIF
Sbjct:  302 YIMSLFFKGYWSPKTEEYVVSETDDLTALLVDSTDATPHGLCNAVYIGYAPSTSQVAALTAYSAQFKVRLVYFPSALTHTTAEFTAKLGIQTYFAGDITTPAFVQLSDLGSTKVSITQPGFQTDP---NLFSPPLFSYPVIINAVPEEGVVEVLAQYVDSAGDPYLSGFAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 517          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 4.500e-33
Identity = 87/250 (34.80%), Postives = 136/250 (54.40%), Query Frame = 1
Query:  100 EVIPTEVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVDTN------HGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESN--LFRRPMIQFSAGDGTGVATAVAEYADT-SGTALATTDGSP-SAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
            E +  +VLVD+ PC+ +   + +   +    Y+ + FFKG+W+    + + +   D+  L VD+       HG+CN+++IG  P+ AQ   L  YS ++KVRLVYF  A T        KLG Q YFA  I     ++L+  G    ++      +DP      LF  P+I  +  +  G+   +A+Y D+ S   L+   G   +AA++++ GA+G EE+HVF ++ WFD G+W WAH+  EWATKGIF
Sbjct:   90 EAVSGDVLVDLVPCLFSSLAVGESNENNPALYIMSLFFKGYWSPKTEEYVVSETDDLSALLVDSTDTSGVPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYFPSALTHTTESFTTKLGIQTYFAGDIVTPAFVQLSDLGAEKVTITQPGFKTDPNVVTPALFSYPVIVNTVPE-EGIEV-LAQYVDSDSEPYLSGAAGDQENAAMLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 337          
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D8LD69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD69_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.590e-28
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query:  118 VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKL 492
            V VD+QPCILAPST+ +D G   DAY+ + F++G+W A+Q       D   LT     G+CN +++GI  T AQ ++L++YS  FKVR+VYF+ A+TAND  + ++LG  Q F+ P+  AP I L
Sbjct:   23 VTVDLQPCILAPSTITQDNGDTPDAYVTSTFYQGYWGATQLTSTGTSD---LTNSGTSGKCNVVYVGIPVTEAQKLELQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIAL 144          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G056_ECTSI1.300e-6852.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K3S3_9PHAE5.650e-6046.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K730_9PHAE1.420e-4944.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G022_ECTSI9.080e-4543.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLI8_ECTSI1.410e-3737.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FLI7_ECTSI1.300e-3536.04WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLJ3_ECTSI6.440e-3537.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPQ4_9PHAE1.020e-3337.90WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLJ1_ECTSI4.500e-3334.80Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LD69_ECTSI1.590e-2845.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3315contigH-paniculata_contig3315:10787..14423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score243.4
Seed ortholog evalue1.2e-61
Seed eggNOG ortholog2880.D7G056
Hectar predicted targeting categoryother localisation
EggNOG OGs28IRF@1,2QR2R@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size817
Cds size813
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.60681-CDS-H-paniculata_contig3315:10786..108891622930025.60681-CDS-H-paniculata_contig3315:10786..10889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 10787..10889 +
1691481115.5434258-CDS-H-paniculata_contig3315:10786..108891691481115.5434258-CDS-H-paniculata_contig3315:10786..10889Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 10787..10889 +
1622930025.626709-CDS-H-paniculata_contig3315:11347..114061622930025.626709-CDS-H-paniculata_contig3315:11347..11406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 11348..11406 +
1691481115.5543437-CDS-H-paniculata_contig3315:11347..114061691481115.5543437-CDS-H-paniculata_contig3315:11347..11406Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 11348..11406 +
1622930025.6426256-CDS-H-paniculata_contig3315:11683..117581622930025.6426256-CDS-H-paniculata_contig3315:11683..11758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 11684..11758 +
1691481115.5626383-CDS-H-paniculata_contig3315:11683..117581691481115.5626383-CDS-H-paniculata_contig3315:11683..11758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 11684..11758 +
1622930025.6609766-CDS-H-paniculata_contig3315:12250..123881622930025.6609766-CDS-H-paniculata_contig3315:12250..12388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 12251..12388 +
1691481115.571364-CDS-H-paniculata_contig3315:12250..123881691481115.571364-CDS-H-paniculata_contig3315:12250..12388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 12251..12388 +
1622930025.6794298-CDS-H-paniculata_contig3315:12689..128101622930025.6794298-CDS-H-paniculata_contig3315:12689..12810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 12690..12810 +
1691481115.582989-CDS-H-paniculata_contig3315:12689..128101691481115.582989-CDS-H-paniculata_contig3315:12689..12810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 12690..12810 +
1622930025.6993947-CDS-H-paniculata_contig3315:13498..136311622930025.6993947-CDS-H-paniculata_contig3315:13498..13631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 13499..13631 +
1691481115.590467-CDS-H-paniculata_contig3315:13498..136311691481115.590467-CDS-H-paniculata_contig3315:13498..13631Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 13499..13631 +
1622930025.72324-CDS-H-paniculata_contig3315:14237..144211622930025.72324-CDS-H-paniculata_contig3315:14237..14421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 14238..14421 +
1691481115.5998402-CDS-H-paniculata_contig3315:14237..144211691481115.5998402-CDS-H-paniculata_contig3315:14237..14421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3315 14238..14421 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3315.8896.1prot_H-paniculata_contig3315.8896.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3315 10787..14421 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3315.8896.1

>prot_H-paniculata_contig3315.8896.1 ID=prot_H-paniculata_contig3315.8896.1|Name=mRNA_H-paniculata_contig3315.8896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp
VICGESYTCPDGFTVRPTSTCAGVPCTDTECCMEVIPTEVLVDMQPCILA
PSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRC
NSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQ
YFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGD
GTGVATAVAEYADTSGTALATTDGSPSAAIVTWVGANGVEEMHVFFSLAW
FDMGSWAWAHYIAEWATKGIF
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mRNA from alignment at H-paniculata_contig3315:10787..14423+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3315.8896.1 ID=mRNA_H-paniculata_contig3315.8896.1|Name=mRNA_H-paniculata_contig3315.8896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3637bp|location=Sequence derived from alignment at H-paniculata_contig3315:10787..14423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTATCTGCGGCGAAAGCTACACCTGTCCTGATGGATTCACGGTGCGCCC CACATCAACCTGTGCCGGCGTCCCTTGCACTGACACGGAGTGTTGCATGG AAGGTGAATGTTTGGTTGAAACTAGTATATATATTATTCATATGATTCAT GATCCGACACAGTTGATACTCACTTCGATATATATTTACTGCAAATCTAC GTCGTTTCTATAACTTTAATTCGCCAATGTGTAAAAAAAACGTTGGACTG TCGACGACCTTGCCGCTGCCTCCGATCACCAAATCACTCATCGCAGGGGC CCAGCATTTAGATCATCCTTGATCACATCGATATGGCGTTGACCTTGGGC TTGGTACTCTAGATTGAATAATTGCAGATTAAACAAGTTAGAGGAAGTGT TGGGAGTGGAGAGTTCATGCCTGGAGGTGAGGTATACGCTTGTATGTGAA CGCGCCACCGCTGCGGTGGCACCTGGGTCGATATAGGACACTCGACCGCG CTCGGGGCGCTTCTCTGACGCTCATACTCGCTGTTCGTCGCCACCATCCC ATTTGTCACAGTGATTCCCACCGAAGTCCTGGTCGACATGCAGCCGTGCA TCCTGGCGCCTTCAACCCTTGTGAGCGCTATATGTTGTCAGCGCGTCCAC CTTCTGCAGAGTAATGTTGTCAAAAACAAAGTACAGCGTATGTCGCAAGT ATCGTATATAGCGTGCTTCCTGCATTTATGTGTAACATGTTTTCTTACTC GTCGTGTGCCCGATTGTTCTAGTAGTTCTAGTATCCATGCACCTCGGGGC CCGCACATTGCAGCAGTGCCGACACCCACCGGGTAGATACCTTGCCCCTT GACGGTAGCTCTTCATTCGAAAACCACGCGATCTGTTGCTCTCGCAGGAG AAGGATGTTGGCTCCGTGTCCGACGCGTATCTTTTCAACAACTTCTTCAA GGGTTTCTGGACGGCGTCTCAGGTCCGTAATTATTCCCCCTCGGTGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGACATTATTTTATGGTGAG CTTGGTTGGGACGTGTAGTGGGCGGCAATATTGCTGGCAGACGATGGCTG CCATTCTGACTCACTAGTTTGATTTTCAATTTGCGGCAGTTGACATCGAG TGTAAATATATTCATGAAGAGCAAAATGCAAAGTAGTTAATTTCAAATAT ATTCATCGAAACTGGAAAACAAAGATACCGCACGAGATTTTTCGCTACGG TACGGCACGCTGTAGCACTACAGTTGAAGTCAGCGGCAAAATAGATGCGA TAAGCACCTCGTTAAATCATCATTTCGGTCGAACACCATCCCGCAACTTT GGCTTGCTAGTAGTGGTGCTCTGCTCTTGACATTTGATACGGTATTTCGC CTTGTGGATGCTAACGCATTACACACTTTACCCCCACTCCGCCCCTCTTA TGGTGTCTCAACAGAACATTCAAGCGCCGGCCGGCGATGTGCTGGACTTG ACGGTTGACACTAACCACGGGAGATGCAACTCCATCTTCATCGGCATCGT ACCAACCGCTGCGCAAAACGTTCAGCTGGAGAATTACTCGCATCGATTCA AGGTATGTCGTATGTACGATAGGAATCGATGGAATAAATGCTGCATACTT CGCTGGCTGCCCGAGGAAGCCTTATTGTGTTCGTTTCTCGTGAGTGTTAA AGGGCCTGTGCGTATGATTTGGGGTATGTCTTGATTGCGATGTATCATAT CGTGCAGCATAACATTACACTGCCGTCCGTTTAATACATTGCAAACGTTT ACGTTTCTCATTTGCATCAGCTTGTTTTCTTCTGACTTTTCTTGAAAATC AACCTTTGTTTGCTGTCGCGTATTTTTCTTCGTTGTTCGATGATATCTGG AAGGTGCGCTTGGTATACTTTGATTTAGCTGACACCGCCAACGACGCTGG CATGGTGAACAAACTGGGTTTCCAGCAGTACTTTGCAGCTCCCATCCAGG ACGCTCCCAGGATCAAGCTCACACGTGCGTGAAACGTTACAAAAGGGTAA ACGCATCGAGTTGGCGCTCACAGTGGTCCGTTCAGCAACCGAGGCGTATC AAAATGGTATATATTATCACGGGCGCCCAGCAGAACGCACCCAGTGGATT CTGCGTCACCATCGGTTACATAGGTTTCGTCACCGAGCTCACCATCTAGT ATAATAACCTGATGAAGTGTTGGCCTACATCCAATGTTGGATGAGGGATA TAGTACAGTAATGTCCCCAGGGTGGGGGGGTGGGGGGGGTGTTGCCTCTC CCCCCTTGTGAATTTTTTCGTGTCGTGCTAACACCATATCCACCTCGCTC ATTCACCGAACAACTGAATTCGTATTCAATTCGCTTATCGTCAGGCTCTA TTCCTGTGCTCGTGCGCCCGCCCCCCCCCCCAATTGCTCCAATTGTGTAG TCCAGTGCATATGCTTTTGGTTCGTGTTTACACGCTTACGAGCTACACTG TAGAAGCGGAAACTACCCTGTAACTCTTACAATAGCAAAACCCACAGCCA CCCTTCACGGTGGTACACTGTATGCAGCAGTCAATCACCCCGTTTGGTGA CCCCAATGCACTCATCCCCCTTCCTTCGTTTTTCCGTCGTTGTTTTTCGG GCATTTTGATGAAAATAAAAATGGCGTTGATATCTCTGCCTTCATTGTTT TTTATCGAACAGCGGCCGGGGTCAACCCGACCAGTGTGGTGCCTTCGACG CTCATAAGCGATCCCACTGAGTCCAACTTATTTAGGAGGCCGATGATTCA GTTTAGCGCTGGTGACGGGACTGGGGTTGCCACTGCAGTAGCCGAGTGAG TGCTCCACATTGTCTTTTCATTTTTGTTTTCGTGGCGAGTTTATGCTCAT GCTGCGGTTTTGTCGCCAACATCGCATAATAATAAAGTACGTGCACTCTT GGACTGACTGACGAAAGAATGTATATGGAGGAATTTCGTGAATTGTGGAC AGGTCGAAATATGATCGATGGGGCTTTGTTTTATGCTTCTGGTTCGAGCT GCTATCTCGTTCGCGAAGTGAGAGGCTGCCATTGCCTGTCAAGTAGTTCC CGGGTGACCGGTCACAACGATTGACTTTTGATACTGTGTGGTGTAGTTTC TCCTATGTAACGTAGGCTCACCTCGACCATCGCACCATCGTGCCCAACCT GTAGCCTCCACGGGGAAGAATTAAAAAATCACCCCCTGGCTGCTAATCCT TACGATGTACAGCAGCATATTTCAACGGGTGGACGGTGGTGGGATAGTTC TACCTCACCAAAGTAAATCAACCACAGCACCCCATGATTTTTGCGTTGCA TTTTGCCTCAGACTAATAGAAAACCTCGCAACGACGATGATACCGCGGTT ACGTTTTCGTTCACTGCCTTTGGATTATGTTTTTTTGCTATGCTTCTTAA GGTACGCGGACACGTCAGGGACAGCTCTAGCGACCACAGATGGGAGCCCT TCCGCGGCCATCGTGACTTGGGTTGGTGCAAATGGCGTTGAAGAGATGCA CGTGTTCTTCAGCCTTGCGTGGTTTGACATGGGGTCCTGGGCGTGGGCAC ACTACATCGCCGAGTGGGCGACCAAGGGTATTTTCCA
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Coding sequence (CDS) from alignment at H-paniculata_contig3315:10787..14423+

>mRNA_H-paniculata_contig3315.8896.1 ID=mRNA_H-paniculata_contig3315.8896.1|Name=mRNA_H-paniculata_contig3315.8896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig3315:10787..14423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTATCTGCGGCGAAAGCTACACCTGTCCTGATGGATTCACGGTGCGCCC
CACATCAACCTGTGCCGGCGTCCCTTGCACTGACACGGAGTGTTGCATGG
AAGGTTATCTGCGGCGAAAGCTACACCTGTCCTGATGGATTCACGGTGCG
CCCCACATCAACCTGTGCCGGCGTCCCTTGCACTGACACGGAGTGTTGCA
TGGAAGTGATTCCCACCGAAGTCCTGGTCGACATGCAGCCGTGCATCCTG
GCGCCTTCAACCCTTTGATTCCCACCGAAGTCCTGGTCGACATGCAGCCG
TGCATCCTGGCGCCTTCAACCCTTGAGAAGGATGTTGGCTCCGTGTCCGA
CGCGTATCTTTTCAACAACTTCTTCAAGGGTTTCTGGACGGCGTCTCAGG
AGAAGGATGTTGGCTCCGTGTCCGACGCGTATCTTTTCAACAACTTCTTC
AAGGGTTTCTGGACGGCGTCTCAGAACATTCAAGCGCCGGCCGGCGATGT
GCTGGACTTGACGGTTGACACTAACCACGGGAGATGCAACTCCATCTTCA
TCGGCATCGTACCAACCGCTGCGCAAAACGTTCAGCTGGAGAATTACTCG
CATCGATTCAAGAACATTCAAGCGCCGGCCGGCGATGTGCTGGACTTGAC
GGTTGACACTAACCACGGGAGATGCAACTCCATCTTCATCGGCATCGTAC
CAACCGCTGCGCAAAACGTTCAGCTGGAGAATTACTCGCATCGATTCAAG
GTGCGCTTGGTATACTTTGATTTAGCTGACACCGCCAACGACGCTGGCAT
GGTGAACAAACTGGGTTTCCAGCAGTACTTTGCAGCTCCCATCCAGGACG
CTCCCAGGATCAAGCTCACACGTGCGCTTGGTATACTTTGATTTAGCTGA
CACCGCCAACGACGCTGGCATGGTGAACAAACTGGGTTTCCAGCAGTACT
TTGCAGCTCCCATCCAGGACGCTCCCAGGATCAAGCTCACACCGGCCGGG
GTCAACCCGACCAGTGTGGTGCCTTCGACGCTCATAAGCGATCCCACTGA
GTCCAACTTATTTAGGAGGCCGATGATTCAGTTTAGCGCTGGTGACGGGA
CTGGGGTTGCCACTGCAGTAGCCGACGGCCGGGGTCAACCCGACCAGTGT
GGTGCCTTCGACGCTCATAAGCGATCCCACTGAGTCCAACTTATTTAGGA
GGCCGATGATTCAGTTTAGCGCTGGTGACGGGACTGGGGTTGCCACTGCA
GTAGCCGAGTACGCGGACACGTCAGGGACAGCTCTAGCGACCACAGATGG
GAGCCCTTCCGCGGCCATCGTGACTTGGGTTGGTGCAAATGGCGTTGAAG
AGATGCACGTGTTCTTCAGCCTTGCGTGGTTTGACATGGGGTCCTGGGCG
TGGGCACACTACATCGCCGAGTGGGCGACCAAGGGTATTTTCGTACGCGG
ACACGTCAGGGACAGCTCTAGCGACCACAGATGGGAGCCCTTCCGCGGCC
ATCGTGACTTGGGTTGGTGCAAATGGCGTTGAAGAGATGCACGTGTTCTT
CAGCCTTGCGTGGTTTGACATGGGGTCCTGGGCGTGGGCACACTACATCG
CCGAGTGGGCGACCAAGGGTATTTTC
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