mRNA_H-paniculata_contig3315.8896.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7G056_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G056_ECTSI) HSP 1 Score: 240 bits (612), Expect = 1.300e-68 Identity = 124/238 (52.10%), Postives = 166/238 (69.75%), Query Frame = 1
Query: 118 VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLT--VDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTA----LATTDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
V VDM PCILA ++EKDVG V+ AYLFN F+KGFWTA+QN+QAP VLDL +D +HG+CN +++GIVP+AAQ QL++YS +F VR+VYFD ADT D + +LG Q F P APR+K T G + S+ P+ +++DP+++NLF RP++ GV+ +A+YAD +G LA SAAIV ++G +G+EEMHVF SLAWFD GSWAW H+I+EW T+GIF
Sbjct: 604 VQVDMVPCILASESVEKDVGPVASAYLFNEFYKGFWTATQNVQAPPAAVLDLVEALDADHGKCNVVYVGIVPSAAQKQQLQDYSRKFNVRIVYFDAADTILDTEVQARLGMQSNFDQPFVGAPRVKRT--GGSADSIAPADMLTDPSQNNLFNRPVVTTVDTLPAGVSI-MAQYADENGDVIAGVLAGVTNPESAAIVEYIGTDGLEEMHVFVSLAWFDTGSWAWGHFISEWGTRGIF 838
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: A0A6H5K3S3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S3_9PHAE) HSP 1 Score: 213 bits (542), Expect = 5.650e-60 Identity = 109/233 (46.78%), Postives = 150/233 (64.38%), Query Frame = 1
Query: 118 VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFS-AGDGTGVATAVAEYADTSGTALATTDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
V VD+QPCILAPS + +D G DAY+ + F+KG+W A Q +LT G+CN +++GI T AQ VQL++YS FKVR+VYF+ A+TAND + ++LG Q F+ P+ AP I L G VVPSTL+++P E N+F RP++ + A G G AT +AEY D SG + ++ PS A + + +G EE+H+FFS+AWFD GSWAWAH+ EW TKG+F
Sbjct: 36 VTVDLQPCILAPSKITQDNGDTPDAYVTSTFYKGYWGAKQ---VTLTGTSELTNSLTSGKCNVVYVGIPVTEAQKVQLQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIALATGGAAVARVVPSTLVTNPREFNIFTRPVLVTNLATTGNGTATVMAEYVDDSGANVPSSLSFPSVAAMAYASNDGYEELHLFFSVAWFDTGSWAWAHFFIEWGTKGVF 265
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: A0A6H5K730_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K730_9PHAE) HSP 1 Score: 184 bits (467), Expect = 1.420e-49 Identity = 112/253 (44.27%), Postives = 155/253 (61.26%), Query Frame = 1
Query: 115 EVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDV-LDLTVDT--NHGRCNSIFIGIVPTA------AQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTALATTDG-----------SPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
++ VD++PCI+ + +E+DV +VS+AYL + FKGFW ASQ++ GD DL D NHG+C++IFIG P+ AQ QL YS +F+VRLV+FD A+TAN A + K+G QQYF+ + A I+L + VV L +DP+E +F RP ++ S G T VA+ D+ G +++ TDG S A VT+ G +G EEMHVFF++AWF M SWAWAHYI EWAT+G+F
Sbjct: 26 DIKVDLRPCIITKAAIEQDVSTVSEAYLLSELFKGFWAASQHVIIDTGDGDFDLLNDGDGNHGKCSAIFIGSQPSVGEDGATAQYEQLLAYSAKFQVRLVFFDNAETANLATITTKIGIQQYFSDTLLAAAGIRLKDSDAR---VVNPALQTDPSE--IFFRP-VRVSGDPTGGERTIVADLVDSDGQSISDTDGIWDPSSTMETPGASMAAVTFKGEDGSEEMHVFFAMAWFHMESWAWAHYIMEWATQGVF 272
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7G022_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G022_ECTSI) HSP 1 Score: 171 bits (434), Expect = 9.080e-45 Identity = 103/239 (43.10%), Postives = 132/239 (55.23%), Query Frame = 1
Query: 109 PTEVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTA----LATTDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
P V VDM PCILA +EKD G V+ AYLFN FFKGFWTA+Q VR+VYFD+ADT D + +LG Q F P APR+K T G + S+ P+ +++DPT++NLF RP++ GV+ +A+YAD +G A LA SAAIV ++GA+G+EEMHVF SLAWFD GSWAW H+I+EW T+GIF
Sbjct: 636 PGPVQVDMVPCILASEAVEKDAGPVASAYLFNEFFKGFWTATQ----------------------------------------------VRIVYFDIADTILDTEVQARLGMQSNFDQPFVGAPRVKRT--GGSTDSIAPADMLTDPTQNNLFNRPVVTTVDTLPAGVSI-LAQYADDNGDAIGGVLAGVTNPQSAAIVEYIGADGLEEMHVFISLAWFDTGSWAWGHFISEWGTRGIF 825
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI8_ECTSI) HSP 1 Score: 150 bits (380), Expect = 1.410e-37 Identity = 91/243 (37.45%), Postives = 135/243 (55.56%), Query Frame = 1
Query: 115 EVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVD----TNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPT--ESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTALAT--TDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
+VLVD+ PC+ + +EK + Y+ + FFKG+W+ + + + D+ L VD T HG+CN++++G P+ Q L YS +FKVRLVYF A T A KLG Q YFA I ++L+ G S+ +DP LF P+I + TG+ +A+YAD++G + +AAI+++ GA+G EE+HVF ++ WFD G+W WAH+ EWATKGIF
Sbjct: 380 DVLVDLVPCLFSSVAVEKSNENNPALYIMSLFFKGYWSPRTEEYVVSETDDLTALLVDSSDTTPHGKCNAVYVGYAPSTDQVAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGIQTYFAGDIVTPAFVQLSDLGSTKVSITQPGFKTDPNLFTPALFSYPVIMNEVPE-TGIEV-LAQYADSAGEPYLSGAAGDQENAAILSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 620
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLI7_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLI7_ECTSI) HSP 1 Score: 145 bits (365), Expect = 1.300e-35 Identity = 102/283 (36.04%), Postives = 148/283 (52.30%), Query Frame = 1
Query: 10 GESYTCPDGFTVRPTSTCAGVPCTDTECCME-VIPTE--VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVDTN------HGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPT--ESNLFRRPMIQFSAGDGTGVATAVAEYAD-TSGTALATTDGSP-SAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
GES C T STC G D + V P E VLVD+ PC+ + + + + Y+ + FFKG+W+ +++ D+ L VD++ HG+CN++++G P+ Q L YS +FKVRLVYF A T A KLG Q YFA I ++L+ G S+ +DP LF P+I + D G+ +A+Y D S L+ G +AA++++ GA+G EE+HVFF++ WFD G+W WAH+ EWATKGIF
Sbjct: 37 GESDDCTYSCTGDSESTCGGRWAMDIFAMDDDVTPVEADVLVDLVPCLFSSVAVGESNENNPALYIMSLFFKGYWSPKTEEHVVKEGDDLTALLVDSSDTSEVPHGKCNAVYVGYAPSTDQAAALTAYSAQFKVRLVYFPSALTHTTAEFTTKLGVQTYFAGDITTPAFVQLSDLGGEKVSITKPGFKTDPNLFTPALFSYPVIINTVPDD-GIEV-LAQYVDGDSEPYLSGAAGDQENAAMLSYTGADGHEELHVFFTIGWFDAGAWPWAHFFNEWATKGIF 317
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ3_ECTSI) HSP 1 Score: 143 bits (360), Expect = 6.440e-35 Identity = 90/243 (37.04%), Postives = 134/243 (55.14%), Query Frame = 1
Query: 115 EVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVD----TNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPT--ESNLFRRPMIQFSAGDGTGVATAVAEYADTSGTALAT--TDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
+VLVD+ PC+L ST+ + Y+ + FFKG+W+ + + + D+ L VD T HG+CN+++IG P+ AQ L YS ++KVRLVY A T A KLG Q YFA I ++L+ G S+ +DP LF P+I +A G+ +A+Y D++G + +AA++++ GA+G EE+HVF ++ WFD G+W WAH+ EWATKGIF
Sbjct: 277 DVLVDLVPCLL--STVAIGESTNPGLYVMSLFFKGYWSPKTEEFVVSDTDDLTALLVDSTDATPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYLPSALTHTTAEFTTKLGIQTYFAGDIMTPAYVQLSALGDEKVSITQPGFQTDPNLFTPALFSYPVI-INAVPEAGIEV-LAQYVDSAGEPYLSGAAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 515
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: A0A6H5JPQ4_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ4_9PHAE) HSP 1 Score: 139 bits (351), Expect = 1.020e-33 Identity = 83/219 (37.90%), Postives = 121/219 (55.25%), Query Frame = 1
Query: 193 YLFNNFFKGFWT--ASQNIQAPAGDVLDLTVD----TNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESNLFRRPMIQF----SAGDGTGVATAVAEYADTSGTALAT--TDGSPSAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
Y+ + FFKG+W+ + + + D+ L VD T HG CN+++IG P+ +Q L YS +FKVRLVYF A T A KLG Q YFA I ++L+ G S+ +DP NLF P+ + +A GV +A+Y D++G + +AA++++ GA+G EE+HVF ++ WFD G+W WAH+ EWATKGIF
Sbjct: 302 YIMSLFFKGYWSPKTEEYVVSETDDLTALLVDSTDATPHGLCNAVYIGYAPSTSQVAALTAYSAQFKVRLVYFPSALTHTTAEFTAKLGIQTYFAGDITTPAFVQLSDLGSTKVSITQPGFQTDP---NLFSPPLFSYPVIINAVPEEGVVEVLAQYVDSAGDPYLSGFAGDQENAAVLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 517
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D7FLJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLJ1_ECTSI) HSP 1 Score: 137 bits (346), Expect = 4.500e-33 Identity = 87/250 (34.80%), Postives = 136/250 (54.40%), Query Frame = 1
Query: 100 EVIPTEVLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWT--ASQNIQAPAGDVLDLTVDTN------HGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKLTPAGVNPTSVVPSTLISDPTESN--LFRRPMIQFSAGDGTGVATAVAEYADT-SGTALATTDGSP-SAAIVTWVGANGVEEMHVFFSLAWFDMGSWAWAHYIAEWATKGIF 813
E + +VLVD+ PC+ + + + + Y+ + FFKG+W+ + + + D+ L VD+ HG+CN+++IG P+ AQ L YS ++KVRLVYF A T KLG Q YFA I ++L+ G ++ +DP LF P+I + + G+ +A+Y D+ S L+ G +AA++++ GA+G EE+HVF ++ WFD G+W WAH+ EWATKGIF
Sbjct: 90 EAVSGDVLVDLVPCLFSSLAVGESNENNPALYIMSLFFKGYWSPKTEEYVVSETDDLSALLVDSTDTSGVPHGKCNAVYIGYAPSTAQVAALTAYSAQYKVRLVYFPSALTHTTESFTTKLGIQTYFAGDIVTPAFVQLSDLGAEKVTITQPGFKTDPNVVTPALFSYPVIVNTVPE-EGIEV-LAQYVDSDSEPYLSGAAGDQENAAMLSYTGADGHEELHVFNTIGWFDAGAWPWAHFYNEWATKGIF 337
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Match: D8LD69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD69_ECTSI) HSP 1 Score: 115 bits (289), Expect = 1.590e-28 Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = 1
Query: 118 VLVDMQPCILAPSTLEKDVGSVSDAYLFNNFFKGFWTASQNIQAPAGDVLDLTVDTNHGRCNSIFIGIVPTAAQNVQLENYSHRFKVRLVYFDLADTANDAGMVNKLGFQQYFAAPIQDAPRIKL 492
V VD+QPCILAPST+ +D G DAY+ + F++G+W A+Q D LT G+CN +++GI T AQ ++L++YS FKVR+VYF+ A+TAND + ++LG Q F+ P+ AP I L
Sbjct: 23 VTVDLQPCILAPSTITQDNGDTPDAYVTSTFYQGYWGATQLTSTGTSD---LTNSGTSGKCNVVYVGIPVTEAQKLELQDYSRTFKVRIVYFNAAETANDPEVNSRLGISQDFSEPLISAPFIAL 144 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3315.8896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3315.8896.1 >prot_H-paniculata_contig3315.8896.1 ID=prot_H-paniculata_contig3315.8896.1|Name=mRNA_H-paniculata_contig3315.8896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=271bp VICGESYTCPDGFTVRPTSTCAGVPCTDTECCMEVIPTEVLVDMQPCILAback to top mRNA from alignment at H-paniculata_contig3315:10787..14423+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig3315.8896.1 ID=mRNA_H-paniculata_contig3315.8896.1|Name=mRNA_H-paniculata_contig3315.8896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3637bp|location=Sequence derived from alignment at H-paniculata_contig3315:10787..14423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig3315:10787..14423+ >mRNA_H-paniculata_contig3315.8896.1 ID=mRNA_H-paniculata_contig3315.8896.1|Name=mRNA_H-paniculata_contig3315.8896.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1626bp|location=Sequence derived from alignment at H-paniculata_contig3315:10787..14423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |