mRNA_H-paniculata_contig3312.8891.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3312.8891.1
Unique NamemRNA_H-paniculata_contig3312.8891.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: D7FJL1_ECTSI (RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJL1_ECTSI)

HSP 1 Score: 878 bits (2268), Expect = 1.470e-310
Identity = 449/509 (88.21%), Postives = 474/509 (93.12%), Query Frame = 2
Query:  524 ELVKTGFFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            +LVKTGFFS  +F+ LPLS  M +AL KL F  TTKIQAQAIPPLL+GED+VGAAKTGSGKTLAFLVPVLE LHKVKWSHRNGTACIIISPTRELSLQTYGVLRD +E G++KQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNT+GFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSI+ KPVYVGVDDAEQESTVDGLEQGYVVCPS+KRFLLLFTFLKKNR KKIMVFFSSCNSVKFHSELLNYID+PVMDIHGRQKQQKRTTSFFQFC+Q++GVLLCTDVAARGLDIP+VDWIIQ+DPPDQTAEYIHRVGRTARGQSG+GRALLFLLPEEVGFLRYLR AKAKLNEYEFPVKKVANVQ+QLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLK+IYDVHELDLQAV+RAFGFTVPPRVDLKLSARGQKGRGG                  H+FSATNPYG+KA GD+RQFTH
Sbjct:  137 QLVKTGFFSDVEFSTLPLSSGMLSALAKLNFVMTTKIQAQAIPPLLAGEDMVGAAKTGSGKTLAFLVPVLECLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDVIENGNLKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTKGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIRNKPVYVGVDDAEQESTVDGLEQGYVVCPSDKRFLLLFTFLKKNRKKKIMVFFSSCNSVKFHSELLNYIDMPVMDIHGRQKQQKRTTSFFQFCKQDTGVLLCTDVAARGLDIPAVDWIIQFDPPDQTAEYIHRVGRTARGQSGKGRALLFLLPEEVGFLRYLRTAKAKLNEYEFPVKKVANVQSQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKDIYDVHELDLQAVARAFGFTVPPRVDLKLSARGQKGRGGGKERDQGRRKMAVGGGG-HSFSATNPYGQKAPGDRRQFTH 644          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: A0A835ZG10_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG10_9STRA)

HSP 1 Score: 798 bits (2060), Expect = 3.030e-278
Identity = 415/553 (75.05%), Postives = 459/553 (83.00%), Query Frame = 2
Query:  395 DDAAEAVVPGSKKVKKGDGVSPKMEKTAEGDKEKITIAVNEGPELVKTGFFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAG--DMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFT 2047
            ++A  AV P  K+       S    K  E    +   A        K GFFS E+F  LPLS   + AL  L F T TKIQAQAIPPLLSG+DLVGAAKTGSGKTLAFL+PVLE+L KV W  R GTAC++ISPTRELSLQTYGVLRD  EAG    + THGLLIGGANRRAEAERL+KGV +LVVTPGRLLDHLQNT+GF+F NMQMLVIDEADRILEQGFEEEMHQIIK+LP+ERQTMLFSATQTKKVEDLARLSI+ KP+YVGVDDAEQESTV+GLEQGYVVCPSEKRFLLLFTFLKKNRNKK+MVFFSSCNSV +H+ELLNYIDIPVM+IHGRQKQQKRTT+FFQFCRQ +G+LLCTDVAARGLDIP+VDWIIQYDPPDQTAEYIHRVGRTARG +G GRALLFLLP+EVGFLRYLRAAK  LNEYEFP  KVANVQ+QLSRL+EKNYYLNKSAR+AYRSYLLAY+SHSLK +Y+VHELDLQAV++AFGFTVPPRVDL LSA+G KGR                    HAFSA+NPYG+K  GD+RQF+
Sbjct:  150 EEAPPAVKPSKKRPHDAVSKSGAKAKAGENGAGQAAPAAAASGSTGKKGFFSEERFDSLPLSAGTQAALKDLNFVTMTKIQAQAIPPLLSGQDLVGAAKTGSGKTLAFLLPVLEMLEKVMWGGRQGTACVVISPTRELSLQTYGVLRDLCEAGAGGGRHTHGLLIGGANRRAEAERLMKGVAILVVTPGRLLDHLQNTKGFVFHNMQMLVIDEADRILEQGFEEEMHQIIKILPRERQTMLFSATQTKKVEDLARLSIRDKPIYVGVDDAEQESTVEGLEQGYVVCPSEKRFLLLFTFLKKNRNKKVMVFFSSCNSVNYHAELLNYIDIPVMNIHGRQKQQKRTTTFFQFCRQETGILLCTDVAARGLDIPAVDWIIQYDPPDQTAEYIHRVGRTARGSTGAGRALLFLLPQEVGFLRYLRAAKVTLNEYEFPAHKVANVQSQLSRLVEKNYYLNKSARDAYRSYLLAYASHSLKTLYNVHELDLQAVAKAFGFTVPPRVDLNLSAKGAKGR-------VKTVNKGKRDSSGHAFSASNPYGKKKDGDRRQFS 695          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: W7U0G2_9STRA (RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0G2_9STRA)

HSP 1 Score: 735 bits (1898), Expect = 3.830e-253
Identity = 370/502 (73.71%), Postives = 425/502 (84.66%), Query Frame = 2
Query:  542 FFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFT 2047
            FF+ + F DLP+SD  + AL +L F   T IQ+ AIPPLL+G+D+V AAKTGSGKTLAFLVPV+ELL KVKW+ RNGT  IIISPTRELS+Q YGVLRD  + G    THGL++GGANRRAEAERLVKGV++LV TPGRLLDHLQNT+GFL RN+Q+LVIDEADRILEQGFEE+MHQIIK LPK RQTMLFSATQTKKVEDL RLS++ +PV+VG  +    +TV GLEQGYVVCPS+KRFLLLFTFLK+N+ +KIMVFFSSCNSVKFH+ELLNYID+PVMDIHGRQKQQ+RTT+FFQFCRQ+ G+LLCTDVAARGLDIP+VDWIIQYDPPD   EYIHRVGRTARG +G+GRALLFL  EEVGFL+YLRAAK  LNEYEFP KKVANVQAQL++L+EKNYYLNKSAR+AYRSYLLAY+SHS K+I++VHELDLQAV+RAFGF+VPPRVD+ LS++G KGR                    H FSA NPYGR+ AGD RQFT
Sbjct:  241 FFANQPFEDLPISDATKCALKRLRFVNMTHIQSLAIPPLLAGKDVVAAAKTGSGKTLAFLVPVVELLSKVKWAARNGTGAIIISPTRELSMQIYGVLRDLCDEGGHPLTHGLIMGGANRRAEAERLVKGVSILVATPGRLLDHLQNTKGFLTRNLQLLVIDEADRILEQGFEEDMHQIIKSLPKHRQTMLFSATQTKKVEDLTRLSMQGRPVFVGAHEEAAVATVGGLEQGYVVCPSDKRFLLLFTFLKRNKQRKIMVFFSSCNSVKFHAELLNYIDLPVMDIHGRQKQQRRTTTFFQFCRQDKGILLCTDVAARGLDIPAVDWIIQYDPPDDPREYIHRVGRTARGAAGKGRALLFLTAEEVGFLKYLRAAKVALNEYEFPEKKVANVQAQLTKLVEKNYYLNKSARDAYRSYLLAYASHSHKDIFNVHELDLQAVARAFGFSVPPRVDINLSSKGPKGR------LKNTHKDKRFGSTGHKFSANNPYGRREAGDSRQFT 736          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: A0A7S1XXW2_9STRA (RNA helicase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXW2_9STRA)

HSP 1 Score: 709 bits (1831), Expect = 6.990e-246
Identity = 361/504 (71.63%), Postives = 419/504 (83.13%), Query Frame = 2
Query:  533 KTGFFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQF 2044
            + GFFS   F+ L LS+    AL +  +   TKIQA++IPPLL+G+DL+GAAKTGSGKTLAFLVP +ELL +V+++ RNGT  I+ISPTREL+LQ YGVLR+  E  +  QTHGL+IGGANRR EAE+L KGVN+LV TPGRLLDHLQNTRGF FRN+QMLVIDEADRILEQGFEE+MH IIK LPK RQT+LFSATQT+KVEDLARLSI+  PVYVGVDD ++ STV GLEQGYVVCPS  RFLLLFTFLKKNR +K+MVFFSSCN+VK+H+ELLNYID+PVMDIHGRQKQQ+RT++FFQFC+ ++G+LLCTDVAARGLDIP+VDWI+QYDPPDQ AEYIHRVGRTARG SG GRALLFL PEEVGFLRYLR AK  LNEYEFP  KVANVQ QL RL+E+NYYLNKSAREAYRSYLLAY+SH+ K+I++VH LDL A +++FGFTVPPRVDL  SARG + R                    HAFSA NPYG++A GD+RQF
Sbjct:   51 RPGFFSKAAFSSLDLSEGTARALAENGYERMTKIQAKSIPPLLTGKDLLGAAKTGSGKTLAFLVPAVELLSRVRFTTRNGTGVIVISPTRELALQIYGVLRELCEHHN--QTHGLVIGGANRRTEAEKLAKGVNILVATPGRLLDHLQNTRGFNFRNLQMLVIDEADRILEQGFEEDMHAIIKTLPKTRQTVLFSATQTRKVEDLARLSIEGDPVYVGVDDGDRVSTVQGLEQGYVVCPSANRFLLLFTFLKKNRKRKVMVFFSSCNAVKYHAELLNYIDVPVMDIHGRQKQQRRTSTFFQFCKADTGILLCTDVAARGLDIPAVDWIVQYDPPDQPAEYIHRVGRTARGPSGDGRALLFLAPEEVGFLRYLRKAKVALNEYEFPTSKVANVQNQLERLVERNYYLNKSAREAYRSYLLAYASHADKDIFNVHNLDLVATAKSFGFTVPPRVDLNFSARGDRKRA---RNAKGGDKKKRQKASGHAFSADNPYGQRAKGDRRQF 549          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: B8BY61_THAPS (RNA helicase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BY61_THAPS)

HSP 1 Score: 691 bits (1783), Expect = 3.780e-239
Identity = 350/498 (70.28%), Postives = 407/498 (81.73%), Query Frame = 2
Query:  560 FADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIK-KKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            FA LPLSD  + AL+ + FT  T+IQA +IP LLSG+DL+GAAKTGSGKTLAFL+PV+ELLH  K+  RNGT  I+ISPTREL++Q YGV +D   +G   QT+GL+IGGANRR EAERL KGVN+++ TPGRLLDHLQNT+GF+FRN+   V+DEADRILEQGFE+++  IIK LPK+RQTMLFSATQTKKVEDLAR +I  K  VYV V +    +T  GLEQGYV  PS++RFLLLFTFLKKN+NKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTT+FFQFC+Q +G LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG+ G+GRALLFL PEE GFLRYL+AAK  LNEYEFP+ K+ANVQ+QL RLIEKNYYLN +AR+AYRSYLLAY+SHSL++I+DVH LDL AV RAFGFT PPRVDL  S +G K R                    H+FSA+NPYGRK +GD+RQF+H
Sbjct:   22 FASLPLSDLTQNALSAMGFTRMTQIQAMSIPALLSGKDLIGAAKTGSGKTLAFLLPVVELLHNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCTSGKHHQTYGLIIGGANRRTEAERLAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEDDLRSIIKALPKQRQTMLFSATQTKKVEDLARTAIDPKSAVYVEVPNETNLATAAGLEQGYVTVPSDQRFLLLFTFLKKNKNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQTTGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGEKGKGRALLFLTPEETGFLRYLKAAKVTLNEYEFPMTKLANVQSQLQRLIEKNYYLNCAARDAYRSYLLAYTSHSLRDIFDVHSLDLAAVGRAFGFTAPPRVDLAFSVKGPKARR-HNGQVMNGKGKNGKLANGHSFSASNPYGRKESGDKRQFSH 518          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: A0A6T7F7A1_9STRA (RNA helicase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7F7A1_9STRA)

HSP 1 Score: 691 bits (1783), Expect = 1.410e-237
Identity = 352/525 (67.05%), Postives = 417/525 (79.43%), Query Frame = 2
Query:  485 DKEKITIAVNEGPELVKTGFFSGEK--FADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKP-VYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            +KE+      +G +  K  F+  +   F  LPLS+  + AL  +EFT  T+IQ+++IP LLSG+DL+GAAKTGSGKTLAFL+PV+ELLHK ++S RNGT  IIISPTREL++Q YGV RD   AG   QT+GL+IGGANRR EAERL KGVN++V TPGRLLDHLQNT+GF+FRN+   V+DEADRILEQGFE+++  I+KLLPKERQTMLFSAT TKKVEDLAR+SI +K  +YV V    + +T  GLEQGYV C SEKRFLLLFTFLKKN+NKKIMVFFSSCNSVK+H ELLNYID+PVMDIHGRQKQ KRTT+FFQFC+   G LLCTDVAARGLDIPSVDWIIQ+DPPD   EYIHRVGRTARG +G GRAL+FL PEE GFLRYL+AA+  LNEYEFP +KV+NVQ+QL RLIEKNYYLN++AR+AYRSYLLAY+SHS ++I+ VHELDLQAV  AFGFT PPRVDL  SA+G K +G                   H FSA+NPYG++  GD+RQF+H
Sbjct:   95 EKEEDDAKKPKGGDGDKPNFYDDQSATFDSLPLSEPTKLALASMEFTRMTQIQSKSIPALLSGKDLIGAAKTGSGKTLAFLIPVIELLHKARFSTRNGTGAIIISPTRELAMQIYGVCRDLCTAGKHSQTYGLVIGGANRRTEAERLAKGVNIMVATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEDDLRCILKLLPKERQTMLFSATNTKKVEDLARVSINQKTAIYVEVASETKLATAAGLEQGYVTCESEKRFLLLFTFLKKNKNKKIMVFFSSCNSVKYHGELLNYIDVPVMDIHGRQKQVKRTTTFFQFCKAKKGTLLCTDVAARGLDIPSVDWIIQFDPPDDPKEYIHRVGRTARGATGSGRALIFLTPEETGFLRYLKAARVTLNEYEFPTQKVSNVQSQLQRLIEKNYYLNRAARDAYRSYLLAYASHSNRDIFSVHELDLQAVGLAFGFTTPPRVDLAFSAKGDKVKGRHNGSKLKGDPKSKGLSNGHDFSASNPYGKRPKGDKRQFSH 619          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: A0A7S2PMU9_9STRA (RNA helicase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PMU9_9STRA)

HSP 1 Score: 689 bits (1779), Expect = 2.990e-237
Identity = 346/512 (67.58%), Postives = 414/512 (80.86%), Query Frame = 2
Query:  533 KTGFFSG-----EKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIK-KKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            K  F++G     ++F+ LPLS+  +TAL+ + FT  T+IQA +IPPLL+G+DL+GAAKTGSGKTLAFL+P++ELLH  K+  RNGT  I+ISPTREL++Q YGV +D   +G  +QT+GL++GGANRR EAERL KGVN+++ TPGRLLDHLQNT+GF+FRN+   V+DEADRILEQGFEE++  IIK LPK+RQTMLFSATQTKKVEDLAR +I  K  +YV V +    +T  GLEQGYV  PS++RFLLLFTFLKKN+NKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTT+FFQFC+Q +G LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG  G GRALLFL PEE GFLRYL+ AK  LNEYEFP+KK++NVQ+QL RLIEKNYYLN +AR+AYRSYLLAY+SHSL++I++VHELDL AV RAFGFT PPRVDL  S +G K R                    H+FS +NPYG++  GD+RQF+H
Sbjct:   90 KPNFYAGKDGADDRFSTLPLSENTQTALSAMGFTRMTQIQAMSIPPLLAGKDLIGAAKTGSGKTLAFLLPIVELLHNAKFGSRNGTGAIVISPTRELAMQIYGVCKDLCSSGKHQQTYGLIMGGANRRTEAERLAKGVNIVIATPGRLLDHLQNTKGFVFRNLLAFVMDEADRILEQGFEEDLRAIIKALPKQRQTMLFSATQTKKVEDLARTAIDHKSAIYVEVPNETSLATAAGLEQGYVTVPSDQRFLLLFTFLKKNKNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFCKQTTGTLLCTDVAARGLDIPAVDWIIQFDPPDDPKEYIHRVGRTARGDKGTGRALLFLTPEETGFLRYLKVAKVTLNEYEFPMKKLSNVQSQLQRLIEKNYYLNCAARDAYRSYLLAYASHSLRDIFNVHELDLAAVGRAFGFTAPPRVDLAFSMKGGKDRRHNGQVAKGGKGKTGKLSNGHSFSGSNPYGKRDRGDKRQFSH 601          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: A0A329RG91_9STRA (RNA helicase n=10 Tax=Peronosporaceae TaxID=4777 RepID=A0A329RG91_9STRA)

HSP 1 Score: 687 bits (1774), Expect = 1.320e-236
Identity = 345/519 (66.47%), Postives = 420/519 (80.92%), Query Frame = 2
Query:  497 ITIAVNEGPELVKTGFFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKG-RGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            IT A N     V   +FS E+FA LPLS+  R AL  + FT  TKIQ+++I PLL+G+DL+GAAKTGSGKTL+FL+P +ELLHKV+++ R GT CI+ISPTREL+LQ YGV+RD  +     QTHG+++GGANRRAEAERLVKGVN+L+ TPGRLLDHLQNT+ F++ N+Q+LVIDEADRIL  GFEEEM QIIK +PKERQTMLFSATQTKKVEDLARLSIK+KPVYVGV++ + ++TV  LEQGYVV PS+KRFLLLFTFLKKN  KK+MVFFSSC +VKF+ ELLNYIDIPV+DIHG+QKQ KRTT+FFQFC   +G+LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG  G+G+ALL LLP+E+GFL+YL+A+K  LNEYEFPV K+ANV++QL +L+EK YYL+KSA++AYR YLLAY+SHSLK I+DV  LDLQ V+++FG  VPP+V L +   G+ G R G                  HAFSA NPYG++A+GD+RQF H
Sbjct:   78 ITDATNLAESTVDERYFSSEEFASLPLSEPTRKALADMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAVELLHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKYHS--QTHGIVMGGANRRAEAERLVKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTFLKKNLKKKVMVFFSSCTAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGILLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLKYLKASKVALNEYEFPVSKIANVESQLMKLVEKTYYLHKSAKDAYRGYLLAYASHSLKGIFDVGRLDLQGVAKSFGLQVPPKVTLPVKTNGKTGKRKGTSFDNDGSSRGGKFQRSGHAFSADNPYGKRASGDKRQFAH 594          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: A0A7S2KTK2_9STRA (RNA helicase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KTK2_9STRA)

HSP 1 Score: 687 bits (1772), Expect = 1.500e-236
Identity = 351/520 (67.50%), Postives = 412/520 (79.23%), Query Frame = 2
Query:  491 EKITIAVNEGPELVKTGFFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKGRGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            EK T + +E P         G  F  LPL+D  + AL +L FT  T+IQAQ+IP LL+G+D+VGAAKTGSGKTLAFL+PV+ELL K K++ R GT  I+ISPTRELSLQ YGVLRD + +G   QTHGL+IGGANR+ EA++L KGVN+L+ TPGRLLDHLQNT  F++ NM  LVIDEADRILEQGFEE+M  I++LLPK+RQTMLFSATQTKKVEDLARLSI+   VYV V    + +T  GLEQG+V CPS+KRFLLLFTFLKKNR KKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTT+FFQF +  +G LLCTDVAARGLDIP VDWIIQ+DPPD   EYIHRVGRTARG +G GRALLFL PEE GFL+YL+AAK  LNEYEFPV KVANVQ+QL  LIEKNYYLN+SAR+AYRSYLLAY+SHS K+I++VH++DLQ  + AFGFT PPRVD+  + +G++GR                    HAFSA+NP+G +  GD+RQF+H
Sbjct:   63 EKATESSSEKPNFFAHSDDKG-LFTALPLTDATQKALAELSFTRMTQIQAQSIPSLLAGKDIVGAAKTGSGKTLAFLIPVIELLFKAKFTTRRGTGAIVISPTRELSLQIYGVLRDLITSGGHNQTHGLIIGGANRKTEADKLGKGVNILIATPGRLLDHLQNTSRFVYHNMLCLVIDEADRILEQGFEEDMRAILRLLPKQRQTMLFSATQTKKVEDLARLSIQSSAVYVEVASETKLATAAGLEQGFVTCPSDKRFLLLFTFLKKNRKKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTTFFQFMKDKTGTLLCTDVAARGLDIPEVDWIIQFDPPDDPKEYIHRVGRTARGATGSGRALLFLTPEETGFLKYLQAAKVTLNEYEFPVSKVANVQSQLQNLIEKNYYLNRSARDAYRSYLLAYASHSHKDIFNVHQMDLQGAATAFGFTTPPRVDVAFNVKGERGR---KQGNRKHDPKTQGMSNGHAFSASNPFGERQKGDKRQFSH 578          
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Match: M4C3A2_HYAAE (RNA helicase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C3A2_HYAAE)

HSP 1 Score: 682 bits (1760), Expect = 3.020e-234
Identity = 338/504 (67.06%), Postives = 415/504 (82.34%), Query Frame = 2
Query:  542 FFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDLVGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYGVLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQNTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQTKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLFTFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTSFFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTARGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSRLIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTVPPRVDLKLSARGQKG-RGGXXXXXXXXXXXXXXXXXXHAFSATNPYGRKAAGDQRQFTH 2050
            +FSGE FA LPLS+  R AL  + FT  TKIQ+++I PLL+G+DL+GAAKTGSGKTL+FL+P +EL+HKV+++ R GT CI+ISPTREL+LQ YGV+RD  +     QTHG+++GGANRRAEAERLVKGVN+L+ TPGRLLDHLQNT+ F++ N+Q+LVIDEADRIL  GFEEEM QIIK +PKERQTMLFSATQTKKVEDLARLSIK+KPVYVGV++ + ++TV  LEQGYVV PS+KRFLLLFTFLKKN  KK+MVFFSSCN+VKF+ ELLNYIDIPV+DIHG+QKQ KRTT+FFQFC   +G+LLCTDVAARGLDIP+VDWIIQ+DPPD   EYIHRVGRTARG  G+G+ALL LLP+E+GFL+YL+A+K  LNEYEFPV K+ANV++QL +L+EK YYL+KSA++AYR YLLAY+SHSLK+I+DV  LDLQ V+++FG  +PP+V L +   G+ G R G                  H+FSA NPYG++  GD+RQF H
Sbjct:  109 YFSGEDFAALPLSEPTRKALADMGFTKMTKIQSKSIRPLLAGQDLLGAAKTGSGKTLSFLIPAIELMHKVRFTARKGTGCIVISPTRELALQIYGVVRDICKYHS--QTHGIVMGGANRRAEAERLVKGVNILISTPGRLLDHLQNTKAFIYHNLQILVIDEADRILSIGFEEEMRQIIKCIPKERQTMLFSATQTKKVEDLARLSIKEKPVYVGVEEEDTKATVATLEQGYVVTPSDKRFLLLFTFLKKNLKKKVMVFFSSCNAVKFYGELLNYIDIPVLDIHGKQKQNKRTTTFFQFCNAKTGILLCTDVAARGLDIPAVDWIIQFDPPDDPREYIHRVGRTARGAKGKGKALLMLLPDELGFLKYLKASKVALNEYEFPVSKIANVESQLMKLVEKTYYLHKSAKDAYRGYLLAYASHSLKSIFDVGRLDLQGVAKSFGLQIPPKVTLPVKTNGKTGKRKGQSFDNDGSARGGKFQRSGHSFSADNPYGKRVVGDKRQFVH 610          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3312.8891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJL1_ECTSI1.470e-31088.21RNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835ZG10_9STRA3.030e-27875.05RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
W7U0G2_9STRA3.830e-25373.71RNA helicase n=2 Tax=Monodopsidaceae TaxID=425072 ... [more]
A0A7S1XXW2_9STRA6.990e-24671.63RNA helicase n=1 Tax=Phaeomonas parva TaxID=124430... [more]
B8BY61_THAPS3.780e-23970.28RNA helicase n=1 Tax=Thalassiosira pseudonana TaxI... [more]
A0A6T7F7A1_9STRA1.410e-23767.05RNA helicase n=1 Tax=Attheya septentrionalis TaxID... [more]
A0A7S2PMU9_9STRA2.990e-23767.58RNA helicase n=1 Tax=Skeletonema marinoi TaxID=267... [more]
A0A329RG91_9STRA1.320e-23666.47RNA helicase n=10 Tax=Peronosporaceae TaxID=4777 R... [more]
A0A7S2KTK2_9STRA1.500e-23667.50RNA helicase n=1 Tax=Leptocylindrus danicus TaxID=... [more]
M4C3A2_HYAAE3.020e-23467.06RNA helicase n=1 Tax=Hyaloperonospora arabidopsidi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3312contigH-paniculata_contig3312:6614..16672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score887.1
Seed ortholog evalue5e-255
Seed eggNOG ortholog2880.D7FJL1
Preferred nameDDX18
KEGG koko:K03254,ko:K13179
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000462,GO:0000463,GO:0000470,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0006996,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0008283,GO:0009056,GO:0009057,GO:0009889,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010501,GO:0010556,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0016032,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016074,GO:0016442,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019058,GO:0019068,GO:0019072,GO:0019074,GO:0019222,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0030490,GO:0030684,GO:0030686,GO:0030687,GO:0031323,GO:0031326,GO:0031332,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032991,GO:0033962,GO:0034248,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0042273,GO:0042274,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0051704,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070035,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1990417,GO:1990904,GO:2000112
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0342@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-04_006510.1
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03009,ko03012,ko03041
Exons15
Model size2809
Cds size1977
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.96757-UTR-H-paniculata_contig3312:6613..66891622930024.96757-UTR-H-paniculata_contig3312:6613..6689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3312 6614..6689 +
1691481115.2725759-UTR-H-paniculata_contig3312:6613..66891691481115.2725759-UTR-H-paniculata_contig3312:6613..6689Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3312 6614..6689 +
1622930025.2865126-UTR-H-paniculata_contig3312:15916..166721622930025.2865126-UTR-H-paniculata_contig3312:15916..16672Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3312 15917..16672 +
1691481115.4381561-UTR-H-paniculata_contig3312:15916..166721691481115.4381561-UTR-H-paniculata_contig3312:15916..16672Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3312 15917..16672 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.983077-CDS-H-paniculata_contig3312:6689..68091622930024.983077-CDS-H-paniculata_contig3312:6689..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 6690..6809 +
1691481115.2854192-CDS-H-paniculata_contig3312:6689..68091691481115.2854192-CDS-H-paniculata_contig3312:6689..6809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 6690..6809 +
1622930025.0129933-CDS-H-paniculata_contig3312:7473..76351622930025.0129933-CDS-H-paniculata_contig3312:7473..7635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 7474..7635 +
1691481115.296702-CDS-H-paniculata_contig3312:7473..76351691481115.296702-CDS-H-paniculata_contig3312:7473..7635Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 7474..7635 +
1622930025.0436041-CDS-H-paniculata_contig3312:9015..92941622930025.0436041-CDS-H-paniculata_contig3312:9015..9294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 9016..9294 +
1691481115.3101468-CDS-H-paniculata_contig3312:9015..92941691481115.3101468-CDS-H-paniculata_contig3312:9015..9294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 9016..9294 +
1622930025.0609717-CDS-H-paniculata_contig3312:9622..97211622930025.0609717-CDS-H-paniculata_contig3312:9622..9721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 9623..9721 +
1691481115.3201144-CDS-H-paniculata_contig3312:9622..97211691481115.3201144-CDS-H-paniculata_contig3312:9622..9721Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 9623..9721 +
1622930025.080807-CDS-H-paniculata_contig3312:10355..105211622930025.080807-CDS-H-paniculata_contig3312:10355..10521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 10356..10521 +
1691481115.3339472-CDS-H-paniculata_contig3312:10355..105211691481115.3339472-CDS-H-paniculata_contig3312:10355..10521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 10356..10521 +
1622930025.0957494-CDS-H-paniculata_contig3312:11399..114731622930025.0957494-CDS-H-paniculata_contig3312:11399..11473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 11400..11473 +
1691481115.3477826-CDS-H-paniculata_contig3312:11399..114731691481115.3477826-CDS-H-paniculata_contig3312:11399..11473Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 11400..11473 +
1622930025.114448-CDS-H-paniculata_contig3312:11759..119181622930025.114448-CDS-H-paniculata_contig3312:11759..11918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 11760..11918 +
1691481115.3578985-CDS-H-paniculata_contig3312:11759..119181691481115.3578985-CDS-H-paniculata_contig3312:11759..11918Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 11760..11918 +
1622930025.1271408-CDS-H-paniculata_contig3312:12353..124491622930025.1271408-CDS-H-paniculata_contig3312:12353..12449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 12354..12449 +
1691481115.3655553-CDS-H-paniculata_contig3312:12353..124491691481115.3655553-CDS-H-paniculata_contig3312:12353..12449Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 12354..12449 +
1622930025.1395636-CDS-H-paniculata_contig3312:13023..131041622930025.1395636-CDS-H-paniculata_contig3312:13023..13104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 13024..13104 +
1691481115.3731165-CDS-H-paniculata_contig3312:13023..131041691481115.3731165-CDS-H-paniculata_contig3312:13023..13104Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 13024..13104 +
1622930025.159377-CDS-H-paniculata_contig3312:13363..134981622930025.159377-CDS-H-paniculata_contig3312:13363..13498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 13364..13498 +
1691481115.3812122-CDS-H-paniculata_contig3312:13363..134981691481115.3812122-CDS-H-paniculata_contig3312:13363..13498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 13364..13498 +
1622930025.1824608-CDS-H-paniculata_contig3312:14016..141681622930025.1824608-CDS-H-paniculata_contig3312:14016..14168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 14017..14168 +
1691481115.38931-CDS-H-paniculata_contig3312:14016..141681691481115.38931-CDS-H-paniculata_contig3312:14016..14168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 14017..14168 +
1622930025.2055202-CDS-H-paniculata_contig3312:14459..145201622930025.2055202-CDS-H-paniculata_contig3312:14459..14520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 14460..14520 +
1691481115.3976555-CDS-H-paniculata_contig3312:14459..145201691481115.3976555-CDS-H-paniculata_contig3312:14459..14520Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 14460..14520 +
1622930025.2400336-CDS-H-paniculata_contig3312:14762..148701622930025.2400336-CDS-H-paniculata_contig3312:14762..14870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 14763..14870 +
1691481115.4111414-CDS-H-paniculata_contig3312:14762..148701691481115.4111414-CDS-H-paniculata_contig3312:14762..14870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 14763..14870 +
1622930025.2549486-CDS-H-paniculata_contig3312:15299..154161622930025.2549486-CDS-H-paniculata_contig3312:15299..15416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 15300..15416 +
1691481115.4199488-CDS-H-paniculata_contig3312:15299..154161691481115.4199488-CDS-H-paniculata_contig3312:15299..15416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 15300..15416 +
1622930025.2713017-CDS-H-paniculata_contig3312:15748..159161622930025.2713017-CDS-H-paniculata_contig3312:15748..15916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 15749..15916 +
1691481115.4282572-CDS-H-paniculata_contig3312:15748..159161691481115.4282572-CDS-H-paniculata_contig3312:15748..15916Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3312 15749..15916 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3312.8891.1prot_H-paniculata_contig3312.8891.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3312 6690..15916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3312.8891.1

>prot_H-paniculata_contig3312.8891.1 ID=prot_H-paniculata_contig3312.8891.1|Name=mRNA_H-paniculata_contig3312.8891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=659bp
MKKKSARKKSAKVVGRVGGGKGVAVGVKQELNGDQKAIAKRLAQSQRGSE
ECERDGADDDGGGGEEEGREGDGAGDDHDDQVNTVEQQKEPAPKGKVKHV
IQKRDRDDAAEAVVPGSKKVKKGDGVSPKMEKTAEGDKEKITIAVNEGPE
LVKTGFFSGEKFADLPLSDCMRTALTKLEFTTTTKIQAQAIPPLLSGEDL
VGAAKTGSGKTLAFLVPVLELLHKVKWSHRNGTACIIISPTRELSLQTYG
VLRDFVEAGDMKQTHGLLIGGANRRAEAERLVKGVNVLVVTPGRLLDHLQ
NTRGFLFRNMQMLVIDEADRILEQGFEEEMHQIIKLLPKERQTMLFSATQ
TKKVEDLARLSIKKKPVYVGVDDAEQESTVDGLEQGYVVCPSEKRFLLLF
TFLKKNRNKKIMVFFSSCNSVKFHSELLNYIDIPVMDIHGRQKQQKRTTS
FFQFCRQNSGVLLCTDVAARGLDIPSVDWIIQYDPPDQTAEYIHRVGRTA
RGQSGQGRALLFLLPEEVGFLRYLRAAKAKLNEYEFPVKKVANVQAQLSR
LIEKNYYLNKSAREAYRSYLLAYSSHSLKNIYDVHELDLQAVSRAFGFTV
PPRVDLKLSARGQKGRGGGKEKDQGKRKSSGSGGGGHAFSATNPYGRKAA
GDQRQFTH*
back to top

mRNA from alignment at H-paniculata_contig3312:6614..16672+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3312.8891.1 ID=mRNA_H-paniculata_contig3312.8891.1|Name=mRNA_H-paniculata_contig3312.8891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10059bp|location=Sequence derived from alignment at H-paniculata_contig3312:6614..16672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCTGCTCGTGGATGTACCACCAGCCAGACGCGCCCTTTTCCTCTACCAG CATCTCTTGTTGTGACATCAAGCACAATGAAGAAGAAATCTGCAAGGAAG AAGTCGGCTAAGGTTGTAGGCAGGGTAGGGGGTGGTAAGGGTGTTGCTGT CGGAGTCAAGCAGGAACTAAATGGAGATCAGAAGGCTATCGCCAAGGTCA GTGGCTACATCACCACCATAACCGGTTACTGCGTTCCTGTACGACAGTGC GGTCTGTGTGGTTGAGACTGTTGAAAGTGTTAAAAGTGCTGCTCCTGGCG GGATAGTTAGACACCGTAAACATGGCTATTCCCGTTGCCTGATTCTCTCG CCCTCAAAGTCTTGATAGTCAATGGCCAGCCATACGTGGATGGGTCATGA ATGCCAACGTGAACACAGTGGTCTGTTGTTGTGTGAAGCTTCTGCTATTT AGATGTGGATACCTCGATACGCACCAGTCAACAGCCATGCATGATGACTG ACTAATTCAACCCAATCCACAGCACAACTCGCTCGTGCTGGGGCTTGCGG AAAACCCTTACTTCTCTTGCTGTCAATACGTGGCGATATGATCAATCTCT TGTATAATTATTTTTCGGTGTGTAACTGTGGTAGTGTTAATGTCTCTACT GTATCTCTCTGTCCACACTATCCGCTTGTCTTTTCTCGTGTGTTGTACAA CTGTTGTATCCTTCATAATGAAGACAGCACAGTAAACATATATCTAAATC TGAGCACACAAGCCATGAGGTGTGGCCGTTCAACACGACGGCCACTTTTC TGATTACGAGCTGCAACGAGGTTTCATTACCTGGCCCCTGTCTTTGTTTG GAACGGCCAGAGGCTCGCTCAGAGTCAGCGCGGCAGTGAAGAGTGTGAGC GTGATGGCGCCGATGATGATGGTGGTGGCGGTGAAGAGGAAGGGAGGGAA GGAGACGGAGCTGGTGATGATCATGATGACCAAGTGAACACTGTGGAACA GCAAAAAGAGCCAGCCCCCAAGGTTCGTCACACCATCTCCAAACCCCTAC CATGTTTCCGGGATGTAGCCTGTTTTCTGCTGGGTTGATGAAACCTATAG ACGGTCACCAGGATGTTGGATGTTGTGGTGCACAGCACCGTAGCTCGGTC AACATGAGATACGAATACCTAACTTGACAACTACGTACTTGGTACTGTAT AGATTTATCAGGGTTCTACGCCTGTCTGCCAGTTGAACCTGTCCGGCACA TTTGTTAATGGCAAATCGTTGACGGTGGGAATTTTCAACAGCCATCATGT TCGATTCCTCCGTTGTACGCTGACACGGCTTCCCCCTTTGACTCGCAGTC GCAGGCGTGCCGCAGAAACAAGTAGACGCTGTTATTTATTACTGTTACCT CTCAGTCCGCCCTCTCTGGTAACCACGTCTGCTGTAGTCCGACTGATGAA CTCACTAGATAGAAACCTTACATTGGTTGGCAGAGGATAAAAGTGAATTA GGTGGGGCTTTCCCTCTTCTATCTCCAGACATATAGAAATTCTTACTTTA TTCCGCTGTATATGTCTTGGTATCGTAGTCCGATACCTCTCTTCTGCTAC TGTAACTGATTTGTAGAGCATCGAACAACGCAAACATATCATGGTGGCTG GTTGATTTGCACTCGACGGCCTCGTGGTAAGTCAGTGTCCCGGACCCCAG ACCGCAACCATAATATCCCGAACAGTACCAGCATTTTACCGAACCGGAAC AAATATATGCTCAACAGCAACATATCAAAGTATTGGTGGAACGGAACTCT CATTTTCCAACATGGTCAACCGGTCGGTTGCTCATGAGCAAGTCATCAGC CACAGCGTTGGCTGGTTGACCCAACGAGATTTTCGCCGATGGCAGGTTGG TGAGCTGGATGGTATTTTGCCGTTGGCAAGGCAGGCTAGGTCAACGAGCC ACCATCATAAATATTAGAGAGCGGATAGACGTAAGATGTAGCTCGTTTTT CAGTCTGCAAATAATTGATTACCTCCTGATTGATCCAGGTAGTGCCGCTT TGCTTATGCATCGCCAACAATGACTAGGCTCCAATGTGCAGATGATGCGA TAGGCAGGATCACGATGTGCTGATTGTTGTCGAATATGGCCTTTTCGTTC CGCAGTTTCAAACATTGAAGCCTTGGAGGTATGCCCCCAAATTCAGTATA CAGGACAGTCACTCAAGGCATGTTGTGCGATGTGGTCCCGTTTGCTTCAA AGGGGACTATTGAACTATTGTTGCCCCATTGTGTCATGCAAGCTGCGGTC GTTCCCCACCGTGATGCTAGTACTCAGTTTCTGTACTGATTCCAGTATTG TTGTTGCTGTTTGGAGAACACCCTGTATTTTGTGTACATCTGTGTTCGAC AGGGCAAAGTAAAGCATGTTATACAAAAGCGCGACCGAGATGATGCAGCA GAAGCTGTAGTTCCTGGTTCAAAGAAGGTCAAGAAAGGGGATGGCGTCTC TCCTAAGATGGAGAAAACGGCTGAGGGAGACAAGGAGAAGATCACAATAG CCGTGAACGAAGGGCCAGAGCTTGTCAAAACAGGCTTTTTCTCGGGCGAA AAATTCGCCGATCTCCCGCTGTCAGACTGCATGCGCACAGCACTCACCAA ATTGGAATTTACCACGACTACGAAAATCCAGGCGAGAGTCAGCGCAGTTT TATGTGACTGGAATCCCCAGGGTGGGTAGGATAGGCTCTCGCTTTCTCTT ATTTTTCGTATTTCTTATATCAGCACCACTGCTCTGCTTGTTCAAATGTC ATTTTCCACTGATTTAAGCGGGTCGAAATTTAGGACGAAAAGTAGATGAA AAGGTGTATTTTCGCCAAAGTCTGGTTTACATCGAGTGAATACTAGGTAT TGCAATGCTGAGAAAGTACGGGAGTCAATAGTGTCCATTGTATGGTAAGG TTGAAGTCTTCCCGGCTGTTTGATATGTTGTTTTATATATCCTGCACCGT GTTCTGCAGGCCCAGGCGATCCCTCCTTTGCTGTCGGGAGAAGATTTGGT CGGTGCTGCTAAGACGGGATCAGGGAAAACGCTCGCCTTCCTTGTGCCAG TTCTTGAGGTACGTCAACGTTGCTTTACCCAGGGATCGACTTTATCTGCG GTGTATAGTCTGTGTAAGCGGGGTTGAGCAATGCAGTCATACAACAATAC ATGGCCTAAACCTGTAGGATGGTTCATGATTCGTGGTTAATGATCGATTC GGAGGGTCCCAGGCGGCTCGAGGGCTTGAGTAGATCACATCCTCAACTTC GTAGTTATGGTTATTCATATCGATTCTGTAATAATATTCATCAACTGTAG CACTGATGATGCCGTCCAGCTTGGAACAGAACTCGCTGTGGGCTGTGAGA GGGAAAGGGAGAATACTCTTGTTTTGCATGCCGCAGTTGTTATTGTTATT GTTGGACTGTTGACCACGCGTTCTCGAGAGGACGGCTTCTTCCCGCTTGT CGAGAGTCCGACGATAAGAGACAACTTGCGTGCATACGTCCAGTTTGGAC CCTCGACTCGACTTGGCTTGGCTTGACTTGACTGGATTTGACATGCCATG TCAAGAGTCGCGGCGGCAGGGCAGCGCATCCAGCGGTGAGAGAGTAAGAC ATATACACCACCACCAGCAGTATCAGCACCCACTGATACGCGTCAAATTT ATTTTTGCCCCCCTTCGGTTGTTGACTCATGCTGTGCTATAGCTACTCCA TAAGGTGAAATGGTCTCACCGGAACGGGACAGCCTGTATAATCATCAGTC CCACGCGAGAGCTGTCGCTGCAGACGTATGGAGTGCTCAGGGACTTCGTT GAGGCGGGTGACATGAAGCAAACTCATGGCCTACTCATTGGAGGAGCGAA CCGCAGAGGTGAGCGAACGTATTATGACGATGCAATGTACCTTTTTTGGT TGCGCTCCGTGGGCCTTGATCGAGTCCTCATCTCCTCGTGTATTTGCGAG GCTGCGTGGGGTACACTTTTTGTCGATTCTGCGCCCGGGGGTTGTTGATT GTCAGATTTAGTATGCCTCATGCTCTCACGCAGTTTGTTGTTTTTGTAGT CCTTAACGAGTAGGTCGTAAAATATTCGTTGGGCATAGGGTATCCTGGGC AAGCTTTGTTCTCATGTGCGTAGTGGAGTCCACGTGACAGAATCTGGCGC GTGTGCAATTATGTATAATCAGGTCAAAATCCTTACAGAATCCGCGCACA CGGAACTGAGTTATGACTAGATGTGGTCCAAGTGGACTTCAATCAACCCT TTCAGCGTAGGTTTCCATCTAGTACGTATCTGTCCAGTTCTACCTCAAAA CAGGGGAAAACGGCGCCTATGACATGATTGCGGGGATAGAGAGCTGGTGC TGTTCAGGTATACAGTTGTGTACACACAGAGATCGTCGTCATGGCTTGCC CGCAACGCCTGCAGCACTCTACAGTTGTTTTCAGATGCCTTTTTTGTTTC TAAATAGCCTCCAGCGCTAGGAGGGCCAACAGTGCCTGACGGTGTTACCT ACGCTGAAGCGTGTATATCCACGCTACCGACCCTCAATTGCAACAATATC TCATCCACTGCAATAGTGTAACATCCTTGCTCGATCTCCCACACACAACA TGACCAACACAATCTGCAGACCGCTCCGGGCCCACGTCCCGCTGTTTTGA AAAGTTGAAAGGTTGGTTTGTCGACGCGCGTGCTTCCTGGTCGATCACGT TTGCCGCGTTGCCCTGTTTTGCTTCTCTGATTCCAGCCGAGGCAGAGCGA CTGGTGAAGGGAGTGAATGTCCTGGTCGTCACGCCGGGTCGTCTTCTTGA CCACCTACAGGTGATGAACGTTTCGACTTCATACAACTATGTCGCACTTC CATGTTTACGTAGTGCATGCAGCAATACACGTGTGTAGGACACAAGCCAT CTGCTACTTTTGACAGTTTTTTTGCTAGTGTTAATTTCACCAGTAGCGGT ACCGTTGGAAATTTTTGCTCTCGTTCACAATATGCACGTGTTTACAAACG AGCAACATTCGCAACTTCTTGGCGTGTGGTGACTTTGGTTGTTGGCCTGT CGTTGGTAACCTTTGTCCATGCCCCGGCGGATCTAATTTCGTGCAGAATA CCAGGGGCTTCCTCTTCCGCAACATGCAGATGCTGGTCATTGATGAAGCC GATCGCATCTTGGAGCAAGGATTTGAGGAAGAGATGCACCAAATTATCAA GCTGCTGCCGAAGGAGAGGCAAACCATGCTTTTCAGTGCCACGCAGACCA AAAAGGTAAGAAACTGTTTCTCGTACACCCTGCAATACCATCGAACCCAG ACAGCACTAGGTAGCTAGAAAATTCGTAACTCCGCTGACTGGCGTACACC GTTATGTTTGATTCTTAAACTGCCGAAATACGTGCCCGTTGCATCAGCCT CGGTATACTGTATCCACATGAGAGCTTCGTACGTGTCATTTTTTTTGTCT CGTGTGATAGGATAAATACGTCTGTTTCTACTTGTATAGGAATATAAAGT TGTCCTATTATGCTTGTTTCTGTCGTGGGAGCAGCCACCTGGAAGCTGTA TTCCGTAGGCACTTATGAACGTAGTACGTTGCCAGTATCTATCTTTGATG AAATGGCGTCTAGCCAACGATATCGCCGTGATTTGCAACCATCGTGAATC TGACTATTTATACATGTACGTATAATTGAATTGAAACCAGGTGGAGGATC TTGCTCGACTGTCGATCAAGAAGAAACCTGTATACGTGGGAGTTGACGAC GCTGAACAAGAAAGTACAGTAGACGGACTCGAGCAGGTAATTTACCTCTC TAACACGGTACGGAGAATATTTTGTAGCGTAGTATAATTAGTCCACTGTG TTTCGCTTTTGAACGATTGCGAATTCCGTTGTGAAGCGCCGTTCCACCTG CAGAGCCCACATTTTTGTGTTGGATTAGGTAAAACAGTGTGCGAGGAAAG TCTCGAATGATTCATGTATCTGCTAAACTGATGGCCACGTTGAGTGTTTT TTCGGCGCGGCTTGGGGTGAAAACGCAGATATTTTGACTTGTAGTGTTTT GCATTTCTATAATGAAGGGAATCACGTACAGTGTTGACCCCGTCATTCTC ATTAGTTTCGGATGCAACGAGCGCCTTAACTTAACATGATGGAACCCTTC TTACTTGTCCTTGTTTCGTACTAAACGGCCTTGCTCTACTAATATACCAC GCAACTTGATATATGTGCTACCTAGCAACGTCCCGCTGTTTGTATCCGAG GGTTACAGGGTATTACCAACCGGTGCCCTGTATGGAACATCGTACACAGT GTTGCCACATTGCCACCTTACCATCCACATAACTGTTTTTGCCTGTGCCA AACGTGAAAGGGTTACGTGGTGTGTCCCAGCGAGAAGCGATTCCTGCTCC TCTTCACGTTTCTGAAGAAAAACCGTAACAAGAAGATCATGGTGAGAATC GTATCATGTTTACGTATCACCGTATCGCCGTCTGTTTCCAAGTTATTCTG AATTGAATGGACTGAATTTGGAGACAACAATTGAATGCCTACCTATGCGC GGCAAAGATTGCCGTGACTTTTTTTCTTTTTTTTCCTGCATACTTGGACT CATGGACCACTTTGTTTTCACTTAACGTGTCCTCGTCCTTCCTGTTGCCA ATGTTTCGGGGCAACTACAACTAACGAATCATTTGACTATTGCCCATCAG GTGTTCTTCTCGTCATGTAACTCCGTCAAGTTTCACTCCGAGCTTCTAAA TTACATCGACATTCCAGTCATGGACATCCACGGTCGACAAAAGCAACAGA AGCGCACGACTTCATTCTTTCAGTTTTGCCGACAGGTATTGTTATTATTA TTATTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAAG AAATCCTGCGTTGTCTTACTTGAATCCAAAACATAAAGTCATATGGATAC TGAACAACTAATGGTGTGAGCAACTTTGATGGTATGTGACCTGATGGAAA ATGTTGGCTTCCATGATGAAAAATTAACTTTGTACTGGGTACTCCTGCTG AGGTGAAAAAATCAAGTGTCGTGTTGTGCGCGGGGTGATGAATCTTCGGC CAGATACCTGAGTCACATAAGCCGGCGTGGAATAGCCAGGTTGGTATGGA ACAAACATGACTGGGGAGTTGGATTGATAATTTTCGTGTGTCCGCGCTGA ACGCTTGACTGTGTCATCGTAAAGGCGCATTCTTCGTTTTCCACACACTG GCGGCAAAAGTGCTTCGCTACTGGAGGGTTGTATGTACTGAGATTCCCAG TATTAGTGATGTATTGCCTAAACTATGTATCTGTGGTTTTCAACTGATTG CAGAACTCGGGAGTTCTGCTGTGTACAGACGTGGCGGCGCGTGGGCTCGA CATTCCCTCGGTGGACTGGATCATTCAGTACGACCCTCCTGATCAAACTG CTGAATACATCCATAGGGTCGGACGAACAGCCAGGGGACAAAGCGGCCAG GGAAGGTGAACGAACATCACATACCTGGTCGACGTCATTTAGTTTCAGTG CAGGGTGGTTTCACGTGCCATGTTCACAGTTACAGAGTGGTCGGAGCAGC GCCAGAAAAGCCAAAGGGTATCGCGCGCATTACACTGTAGATGATGTCGA ACACATGATGTTTATTTATATTATTGTCTTCGCACCGCCTGCTGCACGCA CTGCACCCGTTATCACCTGGGCGTCACGCGTCCTCAAGTGCCACGTGCTT TCATGTCGCGTCGCGTCCGTGCTGCCTTCCGTTCCTCGTTTTCCAGGGCC CTCCTGTTCCTTCTCCCGGAAGAGGTGGGCTTCTTGCGGTACCTTAGGGC GGCGAAGGTGAGGATTATCTGTCCATCTTTTTATTATCATTTTGGCATAG CAATGTTCAAGAAGCGAACGCGACCCTTAATTTAGTCAAGAGCAAGCTAA GCAAACAAACGTTACGTTCTCTGTGTCCATGTTTGCTGCAGCAACGGGAG TGCTATGTGCACCACTCGAGGTAGGGATAGCTTGTACAACGGTAGCCTAA TTTTCAGCGTGCCGTCCTTTTGTTCTTGTTGAAAAACTTATTCATCCAGG CGAAGTTGAACGAGTACGAGTTTCCGGTCAAGAAGGTGGCAAACGTGCAG GCACAGCTTTCCCGTCTTATCGAAAAGAACTACTACCTCAACAAGTCCGC AAGAGAGGTAAGGGAGTATGATCATGTCATATAATTTGCCAGGTGCTGTG CTTTGGTAACGCAGCTGACACTTGATGTGCAATGTAATGCGACGTCATGT AAGATTTAATGCGATGCCATGTAGGATGGTCATACAGAATTCTCGTACCG CTATCGCCAAAGTTAAACGAAGATCCATGGACGGGTAGCGTACATATACC TGGAGCAACGTGCTGATGGGTTGTACTGTTCTTGTATGTTTGCTGCTGTT TTACCCCCTATTATTTTAGTGCAGCCCTCTGTCGCGATGTCTCTGTTCAC GGTTGTATTGTAAGAATATTCGTGATGACAACTGAATCGAAGTTATATTT TATCGAGGTAATAACGCCATGTACTCTGGATGTGGGCTAACAGTTGACCC TCCCTGCACACACGTTTTTCCCTTGAATATGAACAGGCGTACCGATCATA CCTACTGGCGTACTCGTCTCATTCTCTCAAGAATATCTATGACGTGCACG AGCTCGATTTACAGGCGGTATCGAGGGCATTTGGATTTACCGTTCCGCCA AGGGTGAGTGACTGGGGAATGATGAAAAAATTGGTGCCAGGGTGACCCAC ATGCTGTTGTTGAGCTGCTTCAGTCGTGTGGGATGGGTTTAACGGTACAA ACGAGTCGTAAACGCCATCGACACTTCCTTCTCATAATCGTAAGTATGCA AGTATGTGCGGAATGCATTAGTGTGTCGCAATGTCATTTTTTCTATCATG GCAGTAAAAGGTTGGCGTATGTCGTCATCTGATACTAATATTGTTGACCT GGTACGGTATTGGGCCACGGTGACGTTACGATGAGCTCGTTCACTTTCAC GCGTACTCTTGGCTGATGTTTTGTTTACAAATCAGGTGGACCTCAAACTG AGCGCCAGGGGGCAGAAAGGACGAGGTGGGGGCAAGGAAAAAGATCAAGG CAAAAGGAAAAGCTCAGGGAGCGGAGGAGGGGGCCACGCCTTCAGCGCCA CTAACCCATACGGACGAAAGGCGGCAGGGGATCAACGGCAGTTCACTCAC TGAACAGTTGGTTTTTCGGAGCGCAATGAGTAATAGATGACTATAGGTGG AGCACAGGGCCTGGGCGATTTTCAGGCTGTTCAGATGTACACGTAAACCT GAGTTTGTAGCCTCTAATTTCGAGATGGTGAGACAATCCAGCAGCCCCAT TTTCCCCCTTTGTATGTACATATATGCGGCATGTGTCCTCTGATTTACCA TGTGGATGTTTGGCCCCTTTCGATGTTTGCTCTCTTTTACCTTGCGCGTG GCATGGAGGTTTTCCCTCTGCCGGCAACAAACCATGCGCTCGGAGCAAAA TGGCTGCGACACATGGTAATCTGTATCTAGGGTAGTATATCGGCACCATT TATATAATATGAGATAGCTTGCCGGTGAGTAATCATCTACAAGCTTGTCC CGTAGCAAATGAAATTTTCGGAGTGACGTCTGATCTGTGTAATGATGGGT TGGAATTACATAGTGCTTGAAATCCGGCGTGTACGCATCTGGGCGGTAGT AGTTTCCGTCCTGCCTACGCTCAACGACAAGCTGTTGTATACATTCTATC TAAAGCCAACAACGTACGTTTTTGTGTAACTTTGGCCGCTTATAACTTAG CTCATTTCAGTGCCCAGGATTTGTATAAGCGATGCCTTGTATCGGAGAGA GAAACAGTCATCTCCATATATGACCAACGGGTCTGCGGAGTCAGATGGGG CATTTAAACGAAAGAATCCAAAGTGTATCATCTAGCCTAAGTAGAAGTAT GACGGACAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3312:6614..16672+

>mRNA_H-paniculata_contig3312.8891.1 ID=mRNA_H-paniculata_contig3312.8891.1|Name=mRNA_H-paniculata_contig3312.8891.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3954bp|location=Sequence derived from alignment at H-paniculata_contig3312:6614..16672+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGAAGAAATCTGCAAGGAAGAAGTCGGCTAAGGTTGTAGGCAGGGT
AGGGGGTGGTAAGGGTGTTGCTGTCGGAGTCAAGCAGGAACTAAATGGAG
ATCAGAAGGCTATCGCCAAGATGAAGAAGAAATCTGCAAGGAAGAAGTCG
GCTAAGGTTGTAGGCAGGGTAGGGGGTGGTAAGGGTGTTGCTGTCGGAGT
CAAGCAGGAACTAAATGGAGATCAGAAGGCTATCGCCAAGAGGCTCGCTC
AGAGTCAGCGCGGCAGTGAAGAGTGTGAGCGTGATGGCGCCGATGATGAT
GGTGGTGGCGGTGAAGAGGAAGGGAGGGAAGGAGACGGAGCTGGTGATGA
TCATGATGACCAAGTGAACACTGTGGAACAGCAAAAAGAGCCAGCCCCCA
AGAGGCTCGCTCAGAGTCAGCGCGGCAGTGAAGAGTGTGAGCGTGATGGC
GCCGATGATGATGGTGGTGGCGGTGAAGAGGAAGGGAGGGAAGGAGACGG
AGCTGGTGATGATCATGATGACCAAGTGAACACTGTGGAACAGCAAAAAG
AGCCAGCCCCCAAGGGCAAAGTAAAGCATGTTATACAAAAGCGCGACCGA
GATGATGCAGCAGAAGCTGTAGTTCCTGGTTCAAAGAAGGTCAAGAAAGG
GGATGGCGTCTCTCCTAAGATGGAGAAAACGGCTGAGGGAGACAAGGAGA
AGATCACAATAGCCGTGAACGAAGGGCCAGAGCTTGTCAAAACAGGCTTT
TTCTCGGGCGAAAAATTCGCCGATCTCCCGCTGTCAGACTGCATGCGCAC
AGCACTCACCAAATTGGAATTTACCACGACTACGAAAATCCAGGGCAAAG
TAAAGCATGTTATACAAAAGCGCGACCGAGATGATGCAGCAGAAGCTGTA
GTTCCTGGTTCAAAGAAGGTCAAGAAAGGGGATGGCGTCTCTCCTAAGAT
GGAGAAAACGGCTGAGGGAGACAAGGAGAAGATCACAATAGCCGTGAACG
AAGGGCCAGAGCTTGTCAAAACAGGCTTTTTCTCGGGCGAAAAATTCGCC
GATCTCCCGCTGTCAGACTGCATGCGCACAGCACTCACCAAATTGGAATT
TACCACGACTACGAAAATCCAGGCCCAGGCGATCCCTCCTTTGCTGTCGG
GAGAAGATTTGGTCGGTGCTGCTAAGACGGGATCAGGGAAAACGCTCGCC
TTCCTTGTGCCAGTTCTTGAGGCCCAGGCGATCCCTCCTTTGCTGTCGGG
AGAAGATTTGGTCGGTGCTGCTAAGACGGGATCAGGGAAAACGCTCGCCT
TCCTTGTGCCAGTTCTTGAGCTACTCCATAAGGTGAAATGGTCTCACCGG
AACGGGACAGCCTGTATAATCATCAGTCCCACGCGAGAGCTGTCGCTGCA
GACGTATGGAGTGCTCAGGGACTTCGTTGAGGCGGGTGACATGAAGCAAA
CTCATGGCCTACTCATTGGAGGAGCGAACCGCAGAGCTACTCCATAAGGT
GAAATGGTCTCACCGGAACGGGACAGCCTGTATAATCATCAGTCCCACGC
GAGAGCTGTCGCTGCAGACGTATGGAGTGCTCAGGGACTTCGTTGAGGCG
GGTGACATGAAGCAAACTCATGGCCTACTCATTGGAGGAGCGAACCGCAG
AGCCGAGGCAGAGCGACTGGTGAAGGGAGTGAATGTCCTGGTCGTCACGC
CGGGTCGTCTTCTTGACCACCTACAGCCGAGGCAGAGCGACTGGTGAAGG
GAGTGAATGTCCTGGTCGTCACGCCGGGTCGTCTTCTTGACCACCTACAG
AATACCAGGGGCTTCCTCTTCCGCAACATGCAGATGCTGGTCATTGATGA
AGCCGATCGCATCTTGGAGCAAGGATTTGAGGAAGAGATGCACCAAATTA
TCAAGCTGCTGCCGAAGGAGAGGCAAACCATGCTTTTCAGTGCCACGCAG
ACCAAAAAGAATACCAGGGGCTTCCTCTTCCGCAACATGCAGATGCTGGT
CATTGATGAAGCCGATCGCATCTTGGAGCAAGGATTTGAGGAAGAGATGC
ACCAAATTATCAAGCTGCTGCCGAAGGAGAGGCAAACCATGCTTTTCAGT
GCCACGCAGACCAAAAAGGTGGAGGATCTTGCTCGACTGTCGATCAAGAA
GAAACCTGTATACGTGGGAGTTGACGACGCTGAACAAGAAAGTACAGTAG
ACGGACTCGAGCAGGTGGAGGATCTTGCTCGACTGTCGATCAAGAAGAAA
CCTGTATACGTGGGAGTTGACGACGCTGAACAAGAAAGTACAGTAGACGG
ACTCGAGCAGGGTTACGTGGTGTGTCCCAGCGAGAAGCGATTCCTGCTCC
TCTTCACGTTTCTGAAGAAAAACCGTAACAAGAAGATCATGGGTTACGTG
GTGTGTCCCAGCGAGAAGCGATTCCTGCTCCTCTTCACGTTTCTGAAGAA
AAACCGTAACAAGAAGATCATGGTGTTCTTCTCGTCATGTAACTCCGTCA
AGTTTCACTCCGAGCTTCTAAATTACATCGACATTCCAGTCATGGACATC
CACGGTCGACAAAAGCAACAGAAGCGCACGACTTCATTCTTTCAGTTTTG
CCGACAGGTGTTCTTCTCGTCATGTAACTCCGTCAAGTTTCACTCCGAGC
TTCTAAATTACATCGACATTCCAGTCATGGACATCCACGGTCGACAAAAG
CAACAGAAGCGCACGACTTCATTCTTTCAGTTTTGCCGACAGAACTCGGG
AGTTCTGCTGTGTACAGACGTGGCGGCGCGTGGGCTCGACATTCCCTCGG
TGGACTGGATCATTCAGTACGACCCTCCTGATCAAACTGCTGAATACATC
CATAGGGTCGGACGAACAGCCAGGGGACAAAGCGGCCAGGGAAGAACTCG
GGAGTTCTGCTGTGTACAGACGTGGCGGCGCGTGGGCTCGACATTCCCTC
GGTGGACTGGATCATTCAGTACGACCCTCCTGATCAAACTGCTGAATACA
TCCATAGGGTCGGACGAACAGCCAGGGGACAAAGCGGCCAGGGAAGGGCC
CTCCTGTTCCTTCTCCCGGAAGAGGTGGGCTTCTTGCGGTACCTTAGGGC
GGCGAAGGGCCCTCCTGTTCCTTCTCCCGGAAGAGGTGGGCTTCTTGCGG
TACCTTAGGGCGGCGAAGGCGAAGTTGAACGAGTACGAGTTTCCGGTCAA
GAAGGTGGCAAACGTGCAGGCACAGCTTTCCCGTCTTATCGAAAAGAACT
ACTACCTCAACAAGTCCGCAAGAGAGGCGAAGTTGAACGAGTACGAGTTT
CCGGTCAAGAAGGTGGCAAACGTGCAGGCACAGCTTTCCCGTCTTATCGA
AAAGAACTACTACCTCAACAAGTCCGCAAGAGAGGCGTACCGATCATACC
TACTGGCGTACTCGTCTCATTCTCTCAAGAATATCTATGACGTGCACGAG
CTCGATTTACAGGCGGTATCGAGGGCATTTGGATTTACCGTTCCGCCAAG
GGCGTACCGATCATACCTACTGGCGTACTCGTCTCATTCTCTCAAGAATA
TCTATGACGTGCACGAGCTCGATTTACAGGCGGTATCGAGGGCATTTGGA
TTTACCGTTCCGCCAAGGGTGGACCTCAAACTGAGCGCCAGGGGGCAGAA
AGGACGAGGTGGGGGCAAGGAAAAAGATCAAGGCAAAAGGAAAAGCTCAG
GGAGCGGAGGAGGGGGCCACGCCTTCAGCGCCACTAACCCATACGGACGA
AAGGCGGCAGGGGATCAACGGCAGTTCACTCACTGAGTGGACCTCAAACT
GAGCGCCAGGGGGCAGAAAGGACGAGGTGGGGGCAAGGAAAAAGATCAAG
GCAAAAGGAAAAGCTCAGGGAGCGGAGGAGGGGGCCACGCCTTCAGCGCC
ACTAACCCATACGGACGAAAGGCGGCAGGGGATCAACGGCAGTTCACTCA
CTGA
back to top