mRNA_H-paniculata_contig3310.8885.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3310.8885.1
Unique NamemRNA_H-paniculata_contig3310.8885.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A6H5KBK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBK5_9PHAE)

HSP 1 Score: 311 bits (798), Expect = 7.110e-101
Identity = 154/184 (83.70%), Postives = 167/184 (90.76%), Query Frame = 1 
Query:   94 AMFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRPIKTFRTSVIKGEGYPDAFRWLGTQL 645
            ++FAW+RE+ LRLLSTLGLY+K  TVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGG+SFKAWDLGGHEAVRYLWFDFL+ S AIVFMVD AD +RLEEAHWELSEMLSDA+L+GVPVAVLYNKSDLP A   +KL  MLDL + EARRPIKTF TSV+KGEGYPDAFRWLGT L
Sbjct:    2 SLFAWLREIGLRLLSTLGLYNKTGTVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGVSFKAWDLGGHEAVRYLWFDFLSDSHAIVFMVDSADGERLEEAHWELSEMLSDANLDGVPVAVLYNKSDLPDAWPAEKLEGMLDLARFEARRPIKTFVTSVLKGEGYPDAFRWLGTHL 185
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A6V1JLK0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1JLK0_HETAK)

HSP 1 Score: 206 bits (525), Expect = 3.890e-60
Identity = 100/180 (55.56%), Postives = 129/180 (71.67%), Query Frame = 1 
Query:  106 WVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRPIKTFRTSVIKGEGYPDAFRWLGTQL 645
            W RE+ + +LS+LGLY++NAT+V LGLDN+GKSTLLHRL+ G V++L PTERPH + FQ G   FKAWDLGGHE VRYLW DF   SQ ++FMVD AD +R EEA  EL  +L + +L   PVAVL NKSDLP AV E+++   LD E       ++ F++SV++  GYP+AF+WL   L
Sbjct:    8 WFREIIVSVLSSLGLYNRNATIVFLGLDNAGKSTLLHRLTAGAVSSLPPTERPHQEVFQFGTTKFKAWDLGGHETVRYLWDDFSADSQGVIFMVDSADFERFEEAKEELQRLLEEPALAEAPVAVLLNKSDLPNAVDEEEIKRQLDWELTTENNLVECFQSSVVRETGYPEAFQWLCQHL 187
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A7S2GGR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GGR7_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.810e-54
Identity = 93/184 (50.54%), Postives = 129/184 (70.11%), Query Frame = 1 
Query:   97 MFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARR-PIKTFRTSVIKGEGYPDAFRWLGTQL 645
            +F W++EL    L +LG+  K AT++L+GLDN+GK+TLLH+LS+G   +  PTE+ H D+F++GG+ F+AWDLGGHEAVRYLW D+L  +  IVFMVDGAD DRL E   EL+ +  +  L GVP+ VL+NK DL  A+S+++L + L+ E+L  R  PI +FRTS+  G GY    +WL   L
Sbjct:    3 VFQWLQELIASFLLSLGIVDKEATIILIGLDNAGKTTLLHKLSKGVFGSFPPTEKRHQDKFKVGGVQFQAWDLGGHEAVRYLWDDWLPSAGGIVFMVDGADSDRLAECEEELAALAKNEELFGVPIVVLFNKVDLSYALSDEELYVALNWEELRDREGPIMSFRTSIRDGTGYTQGIQWLAQNL 186
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A7R9ZCR7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZCR7_9STRA)

HSP 1 Score: 180 bits (456), Expect = 5.460e-50
Identity = 89/187 (47.59%), Postives = 127/187 (67.91%), Query Frame = 1 
Query:   91 DAMFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGG--ISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRPIKT---FRTSVIKGEGYPDAFRWLG 636
              +FAW+  L   LL++LGL SK  T++LLGLDN+GK+TLLHRL  G V    PT+RPH++ FQ+ G  ++F AWDLGGHEAVR+LW D+   + A++F+VD +D  R +E   EL  ++S+ +LEG P+AV+ NK DLP+A     ++  +  E+L  R   +    FR SV++GEGY +AF+WLG
Sbjct:    1 SGVFAWISSLVNSLLTSLGLVSKKGTILLLGLDNAGKTTLLHRLRTGSVQTFPPTDRPHLETFQVEGTGVTFAAWDLGGHEAVRHLWEDYAPDASAVMFLVDASDAARFDEVRDELDALVSEGTLEGAPLAVVLNKCDLPEARRSADVAASVGYEELAMRHGEERAAMFRISVLRGEGYQEAFQWLG 187
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A7S2WCK7_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WCK7_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.190e-46
Identity = 86/180 (47.78%), Postives = 125/180 (69.44%), Query Frame = 1 
Query:  130 LLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVS-----EDKLSIMLDLEQLEARR---PIKTFRTSVIKGEGYPDAFRWLGTQL 645
            LLS LGL SK+ +++LLGLDNSGK+TLLHRL  G + A  PTERP+++ F+  G+ F  WDLGGHEAVR++W D+L  + A+VF++D  DE R EEA  EL  ++++  + GVP+A+L NK DL  + +     E +++  +DLE+L+       IK ++ SV+KGEGY +AFRW+ + L
Sbjct:   55 LLSALGLSSKSGSILLLGLDNSGKTTLLHRLRTGSILAHAPTERPYVESFRCEGVKFSGWDLGGHEAVRHIWEDYLCEASAVVFLIDITDETRFEEARNELDALVAEGVIAGVPLAILINKCDLMTSWTALEDVEQRIADEIDLEELKRMHGEDKIKMWKMSVLKGEGYQEAFRWIASFL 234
[Close]
BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A7S2UBI2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBI2_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.720e-46
Identity = 88/187 (47.06%), Postives = 127/187 (67.91%), Query Frame = 1 
Query:   97 MFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLT-GSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRP---IKTFRTSVIKGEGYPDAFRWLGTQL 645
            M +WV  L    +  LGL +K  T++LLGLDN+GK+TLLHRL    + +  PTERP+++ F + GI+F  WDLGGHEAVR+LW +++  GS A+VF++D AD  RL E   EL  +++D ++EGVP+A+L NK DL +A+S + +S  +  E+L  R     +  FR SV++GEGY +AFRW+ T L
Sbjct:    9 MQSWVTTL----MMALGLLNKKGTILLLGLDNAGKTTLLHRLRTNSLLSFPPTERPNLERFTVHGITFVGWDLGGHEAVRHLWDEYVCDGSNAVVFVIDVADAQRLGEVRDELDALVNDGAIEGVPLAILLNKCDLEQALSSNDISQGIGYEELVMRHGEDLVGMFRISVLRGEGYDEAFRWIATFL 191
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A7S1CWU4_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CWU4_CYCTE)

HSP 1 Score: 169 bits (428), Expect = 8.580e-46
Identity = 83/172 (48.26%), Postives = 121/172 (70.35%), Query Frame = 1 
Query:  142 LGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDE-FQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIML---DLEQLEARRPIKTFRTSVIKGEGYPDAFRWLGTQL 645
            +GL  K  T++LLGLDN+GKSTL+HRL  G V    PT+RP + E F   GI+F+AWDLGGHEAVR+LW D++   +A++F++D AD++RLEEA +EL  ++++  +E +PVAVL NK DLP+A S  ++   +   D+  +     I+ FR SV++GEGY +AF+W+ T L
Sbjct:   29 IGLKGKEGTLLLLGLDNAGKSTLVHRLRTGSVRNFPPTDRPALTEKFTYRGITFQAWDLGGHEAVRHLWGDYVCECKAMLFLIDAADKERLEEAGYELDALVAEGVVEDLPVAVLLNKCDLPEATSSGEVCAKIQYHDIVNMHGEDKIQVFRISVLRGEGYEEAFKWISTFL 200
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A7S0DZG7_9CRYP (Hypothetical protein n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0DZG7_9CRYP)

HSP 1 Score: 164 bits (415), Expect = 3.730e-44
Identity = 83/179 (46.37%), Postives = 115/179 (64.25%), Query Frame = 1 
Query:  106 WVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRPIKTFRTSVIKGEGYPDAFRWLGTQ 642
            W+R L    L  LGL+ K+AT++LLGLDN+GKSTLLH+L   ++    PT + H   F LG I F AWDLGGHE VR LW ++ +G+ AIVFMVD AD  R  EA  E+ ++L+   +  VP+ VL NK DL  ++ +D+L+  L L+ LE  R ++ F  S++ G GY D F+WL  +
Sbjct:    7 WLRGL----LRLLGLWKKDATILLLGLDNAGKSTLLHKLCSNELRPFVPTTKAHSKTFSLGNIKFTAWDLGGHEQVRDLWEEYYSGADAIVFMVDSADRSRFGEAKKEIQQILAVEDIAEVPILVLGNKIDLEGSIDKDQLADELGLDDLEKDREVEVFSCSLVSGAGYYDGFKWLSQK 181
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BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A1Z5KJS0_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJS0_FISSO)

HSP 1 Score: 167 bits (422), Expect = 1.500e-43
Identity = 95/194 (48.97%), Postives = 122/194 (62.89%), Query Frame = 1 
Query:   91 DAMFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERP--HIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRPIKT-------FRTSVIKGEGYPDAFRWLGTQL 645
             A+++ V  L  RLL TLGL  K  ++VLLGLDN+GK+TLLHRL    + +  PT+RP       QLGGI F+  DLGGHEAVR+LW D+LT + A++F+VD AD  RLEEA +EL  +L       + V VL NK DLP+A+S   +   L+ E+LE  R  K        FR SV KGEGY +AFRW+G  L
Sbjct:  120 SALWSSVSALVSRLLETLGLQGKEGSIVLLGLDNAGKTTLLHRLQTDTIRSFPPTDRPTESAAAIQLGGIQFRVTDLGGHEAVRHLWSDYLTENAAVLFVVDAADAVRLEEAAYELDALLHTLDT-NIAVCVLLNKCDLPEAMSTAAILQKLEWERLEQERKSKDAESAMAIFRISVFKGEGYSEAFRWVGKYL 312
[Close]
BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Match: A0A1Z5JUE1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JUE1_FISSO)

HSP 1 Score: 163 bits (412), Expect = 1.640e-43
Identity = 94/194 (48.45%), Postives = 120/194 (61.86%), Query Frame = 1 
Query:   91 DAMFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTALQPTERPHIDE--FQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGADEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDLEQLEARRPIKT-------FRTSVIKGEGYPDAFRWLGTQL 645
             A ++ V  L  RLL TLGL  K  ++VLLGLDN+GK+TLLHRL    + +  PT+RP       QLGGI F+  DLGGHEAVR+LW D+LT + A++F+VD AD  RLEEA +EL  +L       + V VL NK DLP A+S   +  +L+  +LE  R  K        FR SV KGEGY +AFRW+G  L
Sbjct:    6 SAFWSSVSALVSRLLETLGLQGKEGSIVLLGLDNAGKTTLLHRLQTDTIRSFPPTDRPTESAVAIQLGGIQFRVTDLGGHEAVRHLWSDYLTENAAVLFVVDAADAVRLEEAAYELDALLHTLDT-NIAVCVLLNKCDLPVAMSTATILQILEWGRLEQERKSKDADSAMAIFRISVFKGEGYSEAFRWIGKYL 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3310.8885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBK5_9PHAE7.110e-10183.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6V1JLK0_HETAK3.890e-6055.56Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2GGR7_9STRA2.810e-5450.54Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9ZCR7_9STRA5.460e-5047.59Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2WCK7_9STRA1.190e-4647.78Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2UBI2_9STRA1.720e-4647.06Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S1CWU4_CYCTE8.580e-4648.26Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S0DZG7_9CRYP3.730e-4446.37Hypothetical protein n=2 Tax=Geminigeraceae TaxID=... [more]
A0A1Z5KJS0_FISSO1.500e-4348.97Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5JUE1_FISSO1.640e-4348.45Uncharacterized protein n=1 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3310contigH-paniculata_contig3310:2613..11837 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score315.5
Seed ortholog evalue1.7e-83
Seed eggNOG ortholog2880.D7FIL1
Preferred namesarB
KEGG koko:K07953
KEGG Pathwayko04141,ko05134,map04141,map05134
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG0077@1,KOG0077@2759
Ec32 ortholog descriptionSar1B, Ras superfamily GTPase
Ec32 orthologEc-27_000150.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04031,ko04131
Exons5
Model size1685
Cds size552
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.414774-UTR-H-paniculata_contig3310:2612..27081622930024.414774-UTR-H-paniculata_contig3310:2612..2708Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3310 2613..2708 +
1691481115.0385976-UTR-H-paniculata_contig3310:2612..27081691481115.0385976-UTR-H-paniculata_contig3310:2612..2708Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3310 2613..2708 +
1622930024.499061-UTR-H-paniculata_contig3310:10800..118371622930024.499061-UTR-H-paniculata_contig3310:10800..11837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3310 10801..11837 +
1691481115.091815-UTR-H-paniculata_contig3310:10800..118371691481115.091815-UTR-H-paniculata_contig3310:10800..11837Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3310 10801..11837 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.4272482-CDS-H-paniculata_contig3310:2708..27931622930024.4272482-CDS-H-paniculata_contig3310:2708..2793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 2709..2793 +
1691481115.0517116-CDS-H-paniculata_contig3310:2708..27931691481115.0517116-CDS-H-paniculata_contig3310:2708..2793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 2709..2793 +
1622930024.4399216-CDS-H-paniculata_contig3310:5968..60901622930024.4399216-CDS-H-paniculata_contig3310:5968..6090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 5969..6090 +
1691481115.0611625-CDS-H-paniculata_contig3310:5968..60901691481115.0611625-CDS-H-paniculata_contig3310:5968..6090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 5969..6090 +
1622930024.4542997-CDS-H-paniculata_contig3310:7717..78641622930024.4542997-CDS-H-paniculata_contig3310:7717..7864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 7718..7864 +
1691481115.0687416-CDS-H-paniculata_contig3310:7717..78641691481115.0687416-CDS-H-paniculata_contig3310:7717..7864Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 7718..7864 +
1622930024.4690907-CDS-H-paniculata_contig3310:9638..97251622930024.4690907-CDS-H-paniculata_contig3310:9638..9725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 9639..9725 +
1691481115.076828-CDS-H-paniculata_contig3310:9638..97251691481115.076828-CDS-H-paniculata_contig3310:9638..9725Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 9639..9725 +
1622930024.4838917-CDS-H-paniculata_contig3310:10689..108001622930024.4838917-CDS-H-paniculata_contig3310:10689..10800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 10690..10800 +
1691481115.0843308-CDS-H-paniculata_contig3310:10689..108001691481115.0843308-CDS-H-paniculata_contig3310:10689..10800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3310 10690..10800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3310.8885.1prot_H-paniculata_contig3310.8885.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3310 2709..10800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3310.8885.1

>prot_H-paniculata_contig3310.8885.1 ID=prot_H-paniculata_contig3310.8885.1|Name=mRNA_H-paniculata_contig3310.8885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MFAWVRELTLRLLSTLGLYSKNATVVLLGLDNSGKSTLLHRLSQGQVTAL
QPTERPHIDEFQLGGISFKAWDLGGHEAVRYLWFDFLTGSQAIVFMVDGA
DEDRLEEAHWELSEMLSDASLEGVPVAVLYNKSDLPKAVSEDKLSIMLDL
EQLEARRPIKTFRTSVIKGEGYPDAFRWLGTQL*
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mRNA from alignment at H-paniculata_contig3310:2613..11837+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3310.8885.1 ID=mRNA_H-paniculata_contig3310.8885.1|Name=mRNA_H-paniculata_contig3310.8885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=9225bp|location=Sequence derived from alignment at H-paniculata_contig3310:2613..11837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATCACTTTCACCACAAGACCCCTTGCATTGTCTCTGTCATCATCCATTT
TCCCGTGTTCCAGTACACTGTCTGTTTCTCACCACAAGAAGATGCCATGT
TTGCATGGGTACGGGAGTTAACACTGAGACTGCTCTCCACGCTTGGCCTT
TACAGCAAAAATGCCACGGTAGTACTTCTCGGTGAGTGACAGCGCAGTCA
TCAATCGGAGTTGGGAGAAGTTTGAATTTGGCGACGTTATGGCATATCAA
TCGTGCATCCAGCGAGAGTGATCCATTGTTCCAAATTCCTTGCAGTTCCA
GTTTCAGAAACGAGTCACAATAAGTCATGCTGGTGCCGTTGCTGTTGCTA
TTGCTGCGTCTGTTCCAGAGTAAGGCAGATGGGGTTCAGGCGTATTATCT
TTCCATAAGCACAGTGGTACTTTTTCTGGCTGAAGTTATCTCTGTTGTCG
ATTATAGACGACACCAATTAAATCAGGCTGATTTAGATTGGGTGCATGAG
ACTAGATGTGTATTATGGGACGGTACCGGTACAGCACAGTCCATATAAAA
AGTGAAAAGCACTAGAGTGCTTCTGGTAGTTTCCATGCATCGGACAGCCA
GAGCATTGCGGTGGCCAGAGAAAAGTCAACTTTACTCGACTGTGCTTCCA
GCGTCGTTCAGCTGTAGTCCTCGTTATGGTATGCTCGGAAAAATGGGAAG
CTACTGCACTCTAGGCGATGGAATGCGAGTGGGCTCTATCTCTACGGTGG
GGTTTAAACCTGTTTTTAAAATCGTGTATCCCTCACAAACGAATTTGTCA
ACACTTGTAGTTACATTTACAATACGATACACACCTGTCTAACAGTCTTG
TCTTGTCGAAAAATACTTTGCACACCCTTGTACAACAAGCGTTCCGTTCC
TCAAGGTATTCTACACACTATACACACGGATAGTTTTTCAAGTTCAACTC
ACAGCTGGGGACAAGCAATTGGTCGAGACACTCGTTGTCGACTGTGATTC
TCATAGTACCGGGTCATTCTCCATTTCCCCACAATGACGGGTCATGCACG
CATGCGTCGAAAAAGTACGGAGGTTATACAAAGTAAACCAAACTATCGGG
AACTGTTATCTAGGCGGATGAACCTGTTCCAGATGTGAACGGCATCCAAG
AATAGATGCTACGAAAGTCCCGAGAGTACAGAATTTGTCCGTTGAGGGTT
GTTTGACGAACGGGATACGACCAAAATATGTGAAGCTCACGTTACAAACG
CCAGGAAAGGCTAGAAAAGAAGACACAACCCATAGACAGTCAGTACTGAT
ATCAGGGTCAGATTGTCACCAGTGCGGAGCGTGTTGCTCAGTGTGGCGCT
CGAAATGTCGGAGGTCATTGTTGTCATAGAGCAAGGCTAGTTAGCTTGCA
GCTTCTTCCTCAATAAATTCGAGTACTCAACAAAAGGTCAATGTTGGACT
TCCATGTTCAGGCCGTCGCCACGACACGCACACAGCAGGCACGAATTAGG
AAAATAGAGTGCTGTAACAACAGTGCAGATGCTAGGCATAGGTGAAAGAT
TGATTCAATTAGTCACGTATCTGGCATAGTCAACACGTACTCCTTTGCAG
CCTCTCATGGACTAATTTCAAATAACTCATTGGTGGATTCTGGTCTTCGG
TTACTGCCACAGTATGTAGCATCTTCTAGCGTAGGATGCAATAGTTTCCC
TCCCTCGTCTATTTACCGCGATTTTCGTATGACCGAACCAGAACCTTGTA
AATTGTCGAGGTGGAACCGAAGATCTCGTCATCGTCGGGCTCAACTGGTT
CTCGTCGTCGAATCAAACAGACTATGGTTCTAGTGAACGGATGTGTGTGA
AACGTTTTGTGTGTTGCCGTCGTCGAAACATGGAAAACCAGCCCGTTGAA
CACAGTAAAAATAACACCGAAAACACCCTTTAATTTTTATTACTTCCCCA
TCGCGTTAATACCGCTTCTTATCGTGACTTAAGCTTTGGAGGGAAGGTGG
TTCTGTGGCCACTTTTGACTGGAACCAAAAAACTCGAAAGCGTTCAACGC
GCCAGTGATCGACGGGTCTGTGAGAAATGTGACAATCATTTATAAATGCG
ACCGTCAATTATGGAAAAAATATATGTATATAAATGTGTCAGGGATATCC
CACCATGAGTCACAATAGTACGCGGACTATCATTCGTTGTTGCGGGTGGG
CTTCGGCCTAGACTGGTCATTCTCCATATCAAACATAATATAATGATGTC
ATCGCCAGCTTGGCCGAAGCGTAGTTCGAGGTGTATGCGGGATAGATCAT
ATCAGCCACCGTCATCGGACAATAGCGGCAACATTTGAGGTCATCCCAGT
AGCGAGCTTAAGGTCGCCATGACTGTCCAGCGACGGAGACGTCTAGCGTC
TGCTGCAAGGCTGAAACCCCACAATTTTCGCCTCTGTATCATCCATCTCG
CTCGGCTGTGTCGGTGGCGTAAGATGTGCACCCCCTGGACAAATACGAAT
GGAGCAATTGCAAGTATCTCGAACTATCATTTTTTGTCTTGGGTAAACAC
GTATTTATTCGTTTACAAGTCTTTCAATGGTCACTCTACAGATGGTCACC
AGGTGGTCGTATACCCGGCGAACAGTCACCCATGTAAGTCCTGTTTGTTT
TCCGGATGGTACTGTACAAAGCGAATACTCTATCTGCCCAAGCTTTTCGA
TGCTCCATAGTATAACGAGTACACTGCATATTATTCGCGTCACATGGACA
TTTTCCCCAGCTCACACAGATACAGTGCTCATTCCAGATTTCTCGTATTA
TTCGTGTCTTATATACTCGTATTTGTTCGGGGGTTGAAGTTTGTGACAAC
TCTAACAACGTTGTTATATGCGAAGGGTAACGGGTACGTGCTGCATGTAT
GGTGGTGGATATCATCATTATGAGACCCTCCGTATGCGTGCGGCAACCGG
AACAACGAAATACACGTGTTTCGGCACTTTCGCCCTCCTCACACAAACAA
GTCAAAAGACCCTCACTTTTGCCCACTCCAACCATTTGAGGGGGTGTCGT
GAAACTGGGGGTCACTTCGCCAGGAAAATCCTCGACAACACGTACAGCGA
CTTTTTGGGGTGGGCGAAATTGGCCAGGGAAAAAAAAATGCCGTGCAAAA
ACGCCCCGACGAGAAGCAATCTACGAGGTGTTTTCCCACGTTTTATTTTT
TCAGTCGTCAATCTCTGATTTTTTTTTTTTTTCATATCTTCTCATCTCTC
TTTCATATCTTCTTGCTTCTTGCTCACCCCCATTTCAGAACCAACACTAT
GTTTTTCTCCACTTTTTTATTTTATTTTATTTTATTTGTCGTCCTCCATT
CTTCAGGGTTGGATAACTCGGGAAAGTCGACTCTGCTGCACAGGTTATCT
CAGGGCCAGGTGACCGCCCTGCAGCCAACAGAACGGCCTCATATCGACGA
GTTTCAGCTTGGGGGCATAAGTTTCAAGGTAAGCGATGGTTGCTTTCGCT
CACATTTACGACTATCAGGACCCGCACACCATCGAACAATTGAGTTACAA
GTATTAGATGCAGGAAGAGGCACGTCATAGCATCGTCCTACAATGGAAAA
AAAATATATCGTCCCATTTTCACACAAGGGTCCACTCCTAGGGGGTGGCT
ATATCTATCTCACTCTATTTTGAATCGAAGAGAAGACGCTTTTGAAAGCC
AGAAAAAGAGCCCTATTTCCCCTCAGTTCGTAACTAAAGTTTTACGTACT
GGATAAAGTTGCCACACCTAACCCCTAACCCTACCCGTAATCCTTGCACT
GGTCCTCCGCGTAGCAAACGTGGGCCCTGTAGCTTCGGAAGTCGGCTATA
CGCTGCGCCGCTCCGCGGTGTGGCAACCGCCAAAACCGACTGTCCTCGAG
GCAGGTTGCAGGTTCGGGTAATGCATTACACTATAATAAAAAAAAAAGCA
TAATATATATATACATATATATTTACGACCAACTGGGATAAACTTTACTG
CAGAAAACGGTCCCATATCTATATCGAAAGGAAGTCGTTCGATCCGTTTT
GGACAGGCCTCATCTCATCAACTCACTCCATGAATTCAGCAGTTCTCGCC
AATTCGCCTTCTAACGGCTGCCTATGGAAACTTTCAAGTTGCCGGTGATT
TCAGGTTTCTAGTACTGTACCTCTTCGTATTTTCTCGGAAATTTCCCGAC
AATGACATTAGCACATGCCTTTGCCTGTCTTTTATTACACTTGATGTACT
GCGGCTGGCACCATGCAGATGTAGTCGTAGATACTCTAAAATGCAGACAT
CCCGGTCCGACCTTCGAGTCAGAGTACACGCTTTCCGAAAAGAAATTCCA
CACAGTACAGACGAGCGGAATATACGAAAGGTGTGCTTCAAATGGGAATG
ATGACACCGGCATATTTATAGGAAAAATACATGTGGAGGAATGGGGATTT
GAACCCCAGACATTTCGCATGCGAAGCGAACACTCTACCCCTGAGCTATA
CCCCCATTACGTTCGGGGATAAACCTTGAGAAGCGACAATTTCAACTACA
AAATCAAACTTTCAGGCGGGTCAGAGATATCTGGCACCAAATTAGTAAGT
AGCAAAACCAATGGTTGATGTCTACAGTATACACATGAAGATATTATAAA
CAAGATATCAAGCGGAACAAAATGCTTTGCACAATTTTTTCCGATACAAT
GGGCGATTCACTATTTCTGCATTAATGTACGAGGCCCTTGCAGCTACCAA
TCCCACCAGCCAGCGGCTCAATTGGTGTTCGACAGCGCTGTGGCAATCAC
GATCCGAGGTCTAGTAAGGAGGATGGCAGTAGCACTAATGTATTGACCAA
ATAGAGCCGTTTCCCTACTGACCAATGTACGCTCATTGAACAGGTACTTA
CTCATAAAAACACAACAGCCTCTAAAAGGAAGAGCTAAAAATGGTGGTAA
AATATTTGTAGAGATGAAAGTTTGGACTCTAGCTTTTGGAGTTGTGCATA
CACACGAACAGTTTGTTCAGTAAATAGCACATGTTGCAACCATAGCCTCT
GACTTGCAACACATCACCAACTAACTGCGCAACTTGATTGATTTTTGTCG
TTCAGGCGTGGGATTTGGGAGGACACGAAGCGGTGCGGTATCTGTGGTTT
GATTTTTTGACGGGGAGTCAAGCGATAGTATTCATGGTGGACGGCGCGGA
CGAAGATCGGCTGGAGGAAGCCCACTGGGAACTGTCAGAAATGTTGAGCG
ACGTGAGTTTTTGTGTGATGTCGCCGGATATAAGCGTGCGTAGACGAAAG
GCGCCGGATTATTCTTTCGGAGATTTCGAGCGACATGAGCATTGTGGAAT
GTAGTCGGCCTCATGAGTGTGTAGTGGAATGACGTCGGATCAAAGTGTCG
GAGATGTTCTAGCAGTGTGGGTGGATGATATGTAGCCGGATGAAAAGATT
AGAGGCGTTGAGCGACGTGATGTTCGTTGCGTATGTAGCCAGATTCGATG
ATGTGCAGTCAGAGTAAACTGTCGGAGATGTCGAGTGACGTGAGTGTATG
TTGTGTAGTAGCCGGATTTAAGCAATTGTGTGATAATTGGATGAAGCGCG
TATGACGGAATTTAGCTCGCTTTTCAATGTCGCGTTCTTTTGCCTACTCA
TTAGTATCGGGTCGTTTTGCCCAAGGTAAAACAACTCGCGGTGGAGTCGT
ATTTAGTGTCAAGTTTAACATGCTAACCACTGTCTCACCAATAATTCCAC
GAGATTCATGTCAAGGATCCTTGTCACTCGCCAGGACATGCTATTTATTT
AGAGTCTCGTTGTTGATTCGTAACATATTTTCCAGTTTTGTACTAGAGTA
ATTTCTGGAAAATGATTGTAGGTTCGAGCGTAGCGAGCCGTTGCGGGAGT
GCCGAGGAGAAAAACACGTACAGCACGGCTGTAGCGTAGCCGTGGCTCTA
CCAGTATTGTGGGTATAATGGTGGAGAATTGAAAAATTGAAGTGCGAACT
TCGATTGTGGCGAATGAGAAGGAACCCGGAATTATGCAACAACGCGAAAT
TGCGGGTATGGCTATATTCCAGTGTTAAAAATAACCTCCGCTCGGTTTGG
CGCCCAGGGGCCACTAGAGGGCTCCCCCGGGAGGGTCCCTGTAGGGATTT
TCTTTTAGGAGTTAAAACCCCATTTGCGTCAGTTTCCCTTCGTATCTGGT
CCTATGAGTATATTTAGGAGTTCATATTTAATATGTATTTAACTGGTAAG
ACCCGTTTCAGGCTTGGACATATCTTGGGAGTTAGGAGAGATCCTGGCAC
CGGCGCGACACGTTGGTTTGCATTGAATCAACGGTTGCGCCGCCCTCTCT
GCGCGGTCTTCAAATGGCTTCGGCGACAAGCCCCTGAAGCTCGTAACATT
TTTCGGTGCTTCGCGCCGAAAAGTCGTGGGTGTGCCGCTCCTTCCTGAAT
TTGGTCGATTTCGGAAATCATCAGTCATTCCTGTTTGAAGAAGACGATCG
CGATTATAGAGTACAGAAAATGGCCGGAAACAGTCGGGGCGGACGTTGAC
AGGATAGGTGGAACCTTTTTGAGTCACCGTTGACAATTTAGGAAGGAGTG
CTTGGCGATCGGAGGTCGTTCTCCTGGCAATACAGCCCTACGCTTTTCGA
GGATGCATGGCCAATGTTTCCAACAGCTGCAGACATGAAAAAACAAGACT
ACTTGTCAAACCTATATATATATATTTAATTTATTCATTCTTGGGGTTTT
TTATCTCCATCTGTCCCGCCGCGCCCCCACATGGTTGGAGTTTCGTTGGA
AATCCCTATAAAGGTACACCTCGTGTTTTCATTCTTTTTTTGTGTGTTTG
AACTGTCGTACAACTCTTCTCAAAAATATTTTGTGTTCGCTTGTGGACTT
GTAGTGTCGTTCAAGGATGGTTGTCCAGCCGATGCTTGGAATTAATCTCA
TTGTCTATATGGTCTGGCCTGGCCTGGCCTTGCCTTGCCTTGCCTCTCCT
TTCCTTGCCTTTGTGTTTCATTTCAGGCGTCATTGGAAGGCGTGCCCGTG
GCAGTTTTGTACAACAAGAGCGATCTACCCAAGGCTGTGTCGGAAGACAA
GCTCAGTATAATGGTGAGTGGCAATGCAACAAGTAGGCAACGCGTCTACC
ATAGTTTCTTGTGTGTGCAGACAGCTACGTACGTTTGTGGTAGTTAGTTC
CTTGTGTTACCTACCATTGTAGGGGAGGGGTAACGTGTTCTCGCTCGTCA
GTATTGATTCGCTGCGTGCGTTTCTGGCTACTGGCTGGGTTTCACTGTGA
AATACAAATTCAACCCCTCCCCTGACCACAGGTTGTGAACACGATCTGTT
GGGGCATATAAGCACAGTGGCTGGCCAAAAGTAATGCAGCCCAAGCTCTG
TAGCTGTGCTATGCTACGTGAGTCACACGTGAACAATTGCGGTGGTATCT
ACGACTGGTATGTACGACTGATGTTTAAGAAGTCGTTTTGCGAGACTGTC
AGTAGAAAAATGAAGTCCCAATCGGAAATAGATGCTAACCTCTCGCCCAA
TCAAATGCCTACGTCGAGGAAGCACCGCCAATAGTCTTGGCAGCTCAGGT
ATTCAAAACATGAGCACCACGCTGTTGTTGGTCAAGGGTTATTGGGAAGC
CACCCCAGCTTGACCTCAGCGTGACGAATGCATTGCATTAGAAACATTTG
AGTGTAATTGTGCATTCCTACAATAGCGCTACACTCTTTCGGGATCGTTA
CTTCAGGAGCGATCGTATAGACGAATGCATCAATAATATAAAGTTTGAAA
GCCTTCAGTCACGGGTGACGACCAATGATGAATGATGACCAAGTGGCGGG
GTAGGTGCTGACGGATTTTTTTTTGCAGGTTTCGCTGCACGTGTTAACTA
TGGTGCCGTATAATGATCGTAACTAACTGATCTAGCGTCTAACCTTCCCC
CCGCTGAGTTTTTTCCAGTTTGTAGATGTGTAATCCAGCAACGTTGAGAT
GCTGAGCACTATATCTACCCTCTCCTCTCCCTCAAGGTGTGCGCGTCCCT
GCCCCCGTGCCTCACGTCTTTTGTTAGTTGGACCTGGAGCAACTGGAAGC
CAGGAGACCGATCAAAACTTTCCGCACTTCGGTGATCAAAGGAGAAGGGT
ATCCCGACGCGTTCCGATGGCTGGGAACGCAGTTGTGACATATTTTTTTC
TTCCTACGATGCATTTTTTTTTTTTTTTTTCCTTTTGTTGTAATTGTTGG
ACTAAAAACGAGGTATTTTTCACTTTCGTGTTGGAGTAATGGCGATTTTG
AGAGCACTTTTAACCTGAGGAGTAAATTACCGGTGCTTGCTTTTGTTGTT
CACGTGCGTGCGTACCTTCCGACCCCGTGCGACTGACGAACACAAGAAGG
CATCCGTATAATGGCACACCGCTTGAATTCCTTTGACCGCGAGGTGTGAC
ATAAGGATCAAATCATCGTCGGATCTTATGTAAACGATTGCTCCACCAGA
GTAGACCAGATAAATTATCTTGTGGCCGAACGATCAAGCTAACGCTTGAC
GCCCCCCTGCCCCCGCGTTAGCCGCCAGTCTTGCACAGTTCACGCATGAC
TTAGCGAAAGAGCGACGAGAAGGGAAAACGCGGCGAAATACGCAAGCAAA
ACCGAACATACCTGTTGGTTGCGGCATGACTGCATCTACCATTTGACTCA
ATGACCGGGTAATGTTCTTGGCGGTCCGTATCTGATGTTGAACGCGAAAT
GGCATTAGATTGTTTTTCGAAGAAAAGAAAGACGCATGCGTTTCGATACC
CTTTCATGATATCTGAAAGCGCAAATAATCAAGGGAAGACGGGTGGCGTT
GAACTTATACCTGGTGTTCTAGATTGTATGTATTGTGTATCCGTAACTGA
GAGCGGTGATTTTCACTTCGTGTTATTTCTAGTAGTATGTAATGTAGGTA
GGGCCCATCTCGTTTTTGCGAGTCGACAAAACCTATTTTACGCGTTCGAG
ATACAATGCAACAAACCGCACATGTGGTCGGGTGGTAGTCCATCTACTTC
GGTGCGAAAGAAGAAACTTTATCTCTATTCTGGGACTCATGTGTGACATG
GATATGAAGTACGATTAGGATCAAATTCGATGCGTAGTATGTATGGCTTG
GCGATTGAGGTGTAAAATAATCCGATTCTTATTTCGAGGATATTCGTGTC
GTGTCGCCCTGGAAACCCATGGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3310:2613..11837+

>mRNA_H-paniculata_contig3310.8885.1 ID=mRNA_H-paniculata_contig3310.8885.1|Name=mRNA_H-paniculata_contig3310.8885.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig3310:2613..11837+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTGCATGGGTACGGGAGTTAACACTGAGACTGCTCTCCACGCTTGG
CCTTTACAGCAAAAATGCCACGGTAGTACTTCTCGATGTTTGCATGGGTA
CGGGAGTTAACACTGAGACTGCTCTCCACGCTTGGCCTTTACAGCAAAAA
TGCCACGGTAGTACTTCTCGGGTTGGATAACTCGGGAAAGTCGACTCTGC
TGCACAGGTTATCTCAGGGCCAGGTGACCGCCCTGCAGCCAACAGAACGG
CCTCATATCGACGAGTTTCAGCTTGGGGGCATAAGTTTCAAGGGTTGGAT
AACTCGGGAAAGTCGACTCTGCTGCACAGGTTATCTCAGGGCCAGGTGAC
CGCCCTGCAGCCAACAGAACGGCCTCATATCGACGAGTTTCAGCTTGGGG
GCATAAGTTTCAAGGCGTGGGATTTGGGAGGACACGAAGCGGTGCGGTAT
CTGTGGTTTGATTTTTTGACGGGGAGTCAAGCGATAGTATTCATGGTGGA
CGGCGCGGACGAAGATCGGCTGGAGGAAGCCCACTGGGAACTGTCAGAAA
TGTTGAGCGACGCGTGGGATTTGGGAGGACACGAAGCGGTGCGGTATCTG
TGGTTTGATTTTTTGACGGGGAGTCAAGCGATAGTATTCATGGTGGACGG
CGCGGACGAAGATCGGCTGGAGGAAGCCCACTGGGAACTGTCAGAAATGT
TGAGCGACGCGTCATTGGAAGGCGTGCCCGTGGCAGTTTTGTACAACAAG
AGCGATCTACCCAAGGCTGTGTCGGAAGACAAGCTCAGTATAATGGCGTC
ATTGGAAGGCGTGCCCGTGGCAGTTTTGTACAACAAGAGCGATCTACCCA
AGGCTGTGTCGGAAGACAAGCTCAGTATAATGTTGGACCTGGAGCAACTG
GAAGCCAGGAGACCGATCAAAACTTTCCGCACTTCGGTGATCAAAGGAGA
AGGGTATCCCGACGCGTTCCGATGGCTGGGAACGCAGTTGTGATTGGACC
TGGAGCAACTGGAAGCCAGGAGACCGATCAAAACTTTCCGCACTTCGGTG
ATCAAAGGAGAAGGGTATCCCGACGCGTTCCGATGGCTGGGAACGCAGTT
GTGA
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