mRNA_H-paniculata_contig331.8883.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig331.8883.1
Unique NamemRNA_H-paniculata_contig331.8883.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: D8LN08_ECTSI (Cilia- and flagella-associated protein 418 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN08_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 3.730e-51
Identity = 74/106 (69.81%), Postives = 84/106 (79.25%), Query Frame = 1
Query:    4 RCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            RCG VF+ G    RG+ ASS+SQRACD LRCTDCNF+V+CF G+AWD  TDY+FLRNN PD DKL ARL P SD CAYACQCSWQNV ++ +LSPT RP W CGGH
Sbjct:  193 RCGTVFVGGVATDRGFCASSLSQRACDKLRCTDCNFEVLCFHGRAWDDQTDYMFLRNNVPDTDKLSARLTPCSDSCAYACQCSWQNVKDVRALSPTERPRWACGGH 298          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: A0A1L8FZM7_XENLA (Cilia- and flagella-associated protein 418 n=1 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8FZM7_XENLA)

HSP 1 Score: 114 bits (286), Expect = 7.330e-30
Identity = 51/107 (47.66%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            ++CG V++AG+  P G   +SIS+RACD LRCT C+F VM F  + WD + DY+F RN+ PDL KL  +L+      AYACQCSW++V EL +++   +  W CG H
Sbjct:   92 KKCGPVYVAGSSIPFGIG-TSISERACDQLRCTACDFTVMIFDDRQWDESCDYLFFRNSMPDLSKLQPKLKRKKGARAYACQCSWKSVQELTNITTYSQLRWVCGKH 197          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: UPI0010A84C0C (protein C8orf37 homolog isoform X2 n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A84C0C)

HSP 1 Score: 113 bits (283), Expect = 1.820e-29
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            +RC  V+L G+ AP G   ++ISQR CD LRCT C+F+V+ F    WD + DY+F RNN P+L KL ARL       AYACQCSW++V EL  L    R  W CG H
Sbjct:   87 KRCCPVYLGGSSAPWGIG-TNISQRTCDQLRCTACDFRVLSFDDYLWDKSCDYLFFRNNMPELGKLKARLVKKKGTRAYACQCSWRSVEELIDLQTAQRLHWVCGQH 192          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: A0A6I8NGA9_ORNAN (Cilia- and flagella-associated protein 418 n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8NGA9_ORNAN)

HSP 1 Score: 113 bits (283), Expect = 2.240e-29
Identity = 54/107 (50.47%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            +RC  V+L G+ AP G   ++ISQR CD LRCT C+F+V+ F    WD + DY+F RNN P+L KL ARL       AYACQCSW++V EL  L    R  W CG H
Sbjct:   95 KRCCPVYLGGSSAPWGIG-TNISQRTCDQLRCTACDFRVLSFDDYLWDKSCDYLFFRNNMPELGKLKARLVKKKGTRAYACQCSWRSVEELIDLQTAQRLHWVCGQH 200          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: A0A6I8RHQ8_XENTR (Cilia- and flagella-associated protein 418 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A6I8RHQ8_XENTR)

HSP 1 Score: 112 bits (280), Expect = 5.880e-29
Identity = 51/107 (47.66%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            ++CG V++AG+  P G   +SIS+RACD LRCT C+F VM F    WD + DY+F RN+ PDL KL  +L       AYACQCSW++V EL +++   +  W CG H
Sbjct:   92 KKCGPVYVAGSSVPFGIG-TSISERACDQLRCTACDFNVMVFDNSQWDASCDYLFFRNSMPDLSKLRPKLIRKKGSRAYACQCSWRSVQELTNITVYPQLRWVCGKH 197          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: UPI0018F45712 (protein C8orf37 homolog n=1 Tax=Tachyglossus aculeatus TaxID=9261 RepID=UPI0018F45712)

HSP 1 Score: 111 bits (278), Expect = 1.240e-28
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            +RC  V+L G+ AP G   ++ISQR CD LRCT C+F+V+ F    WD + DY+F RNN P+L KL ARL       AYACQCSW++V EL  L    +  W CG H
Sbjct:   94 KRCCPVYLGGSSAPLGIG-TNISQRTCDQLRCTACDFRVLSFDDCLWDKSCDYLFFRNNMPELSKLKARLVEKKGSRAYACQCSWRSVEELIDLQTAPQLHWVCGQH 199          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: A0A6P6R137_CARAU (Cilia- and flagella-associated protein 418 n=7 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6R137_CARAU)

HSP 1 Score: 110 bits (275), Expect = 3.770e-28
Identity = 50/107 (46.73%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            ++C  VFL G+  P G   +S+SQRAC+ LRCT C+F V+ F  + WD + DY+F RNN PD  KL A+L+   +  AYACQCSW + V L+ L    +  W CG H
Sbjct:   97 KKCCPVFLGGSSVPHGIG-TSVSQRACNRLRCTSCDFSVIMFEDQEWDSSCDYLFFRNNMPDHHKLKAKLRRKKNGRAYACQCSWHSAVSLSDLREQQQLKWVCGKH 202          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: A0A663DTM3_AQUCH (Cilia- and flagella-associated protein 418 n=4 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663DTM3_AQUCH)

HSP 1 Score: 108 bits (269), Expect = 9.050e-28
Identity = 49/107 (45.79%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            +RC  VFL G+ +P G   ++IS+R CD LRCT C+F+V  F+   WD + DY+F RNN P+L KL A++       AYACQCSW+++ EL  L    +  W CG H
Sbjct:   51 KRCCPVFLGGSSSPYGIG-TNISKRTCDQLRCTACDFRVSLFNDYIWDQSCDYLFFRNNMPELSKLRAKMIKKKGARAYACQCSWRSIDELTDLQTDQQLRWVCGKH 156          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: A0A4X2K8C9_VOMUR (Cilia- and flagella-associated protein 418 n=3 Tax=Diprotodontia TaxID=38609 RepID=A0A4X2K8C9_VOMUR)

HSP 1 Score: 109 bits (272), Expect = 1.860e-27
Identity = 48/107 (44.86%), Postives = 67/107 (62.62%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            +RC  V++ G+ AP G   ++ SQR CD LRCT C+F+V+ F    WD + DY+F RNN P+ +KL A++     + AYACQCSW++V EL  L    +  W CG H
Sbjct:  120 KRCSPVYVGGSSAPCGIGTNT-SQRTCDQLRCTACDFRVLSFDDYKWDKSCDYLFFRNNMPEFNKLKAKMTKRKGIRAYACQCSWRDVEELTDLRTDQQLRWVCGKH 225          
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Match: UPI0004433CE9 (protein C8orf37 homolog isoform X3 n=1 Tax=Monodelphis domestica TaxID=13616 RepID=UPI0004433CE9)

HSP 1 Score: 108 bits (269), Expect = 2.340e-27
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query:    1 RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVATDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRPPWTCGGH 321
            +RC  V+L G+ AP G   ++ SQR CD LRCT C+F+V+ F    WD + DY+F RNN P+  KL A++       AYACQCSW+++ EL  L    +  W CG H
Sbjct:   87 KRCSPVYLGGSSAPCGIGTNT-SQRTCDQLRCTACDFRVLSFDDYMWDKSCDYLFFRNNMPEFSKLKAKMIKQKGTRAYACQCSWRDIKELTDLRTDQQLRWVCGKH 192          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig331.8883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN08_ECTSI3.730e-5169.81Cilia- and flagella-associated protein 418 n=1 Tax... [more]
A0A1L8FZM7_XENLA7.330e-3047.66Cilia- and flagella-associated protein 418 n=1 Tax... [more]
UPI0010A84C0C1.820e-2950.47protein C8orf37 homolog isoform X2 n=1 Tax=Ornitho... [more]
A0A6I8NGA9_ORNAN2.240e-2950.47Cilia- and flagella-associated protein 418 n=2 Tax... [more]
A0A6I8RHQ8_XENTR5.880e-2947.66Cilia- and flagella-associated protein 418 n=1 Tax... [more]
UPI0018F457121.240e-2849.53protein C8orf37 homolog n=1 Tax=Tachyglossus acule... [more]
A0A6P6R137_CARAU3.770e-2846.73Cilia- and flagella-associated protein 418 n=7 Tax... [more]
A0A663DTM3_AQUCH9.050e-2845.79Cilia- and flagella-associated protein 418 n=4 Tax... [more]
A0A4X2K8C9_VOMUR1.860e-2744.86Cilia- and flagella-associated protein 418 n=3 Tax... [more]
UPI0004433CE92.340e-2744.86protein C8orf37 homolog isoform X3 n=1 Tax=Monodel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig331contigH-paniculata_contig331:29976..31256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue7.9e-41
Seed eggNOG ortholog2880.D8LN08
Preferred nameC8orf37
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0001917,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0005929,GO:0007275,GO:0007399,GO:0008150,GO:0008594,GO:0009653,GO:0009987,GO:0016020,GO:0016043,GO:0022008,GO:0030054,GO:0030154,GO:0030182,GO:0032501,GO:0032502,GO:0032989,GO:0042461,GO:0042995,GO:0043226,GO:0044422,GO:0044424,GO:0044441,GO:0044444,GO:0044463,GO:0044464,GO:0046530,GO:0048468,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0071840,GO:0071944,GO:0097458,GO:0097546,GO:0120025,GO:0120038
EggNOG free text desc.photoreceptor cell morphogenesis
EggNOG OGs2BMCE@1,2S1KM@2759
Ec32 ortholog descriptionC8orf37 protein
Ec32 orthologEc-27_000930.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size324
Cds size324
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig331.8883.1prot_H-paniculata_contig331.8883.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig331 29976..31256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930024.0789948-CDS-H-paniculata_contig331:29975..300491622930024.0789948-CDS-H-paniculata_contig331:29975..30049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 29976..30049 +
1691481114.8886027-CDS-H-paniculata_contig331:29975..300491691481114.8886027-CDS-H-paniculata_contig331:29975..30049Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 29976..30049 +
1622930024.0952415-CDS-H-paniculata_contig331:30250..303991622930024.0952415-CDS-H-paniculata_contig331:30250..30399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 30251..30399 +
1691481114.8993084-CDS-H-paniculata_contig331:30250..303991691481114.8993084-CDS-H-paniculata_contig331:30250..30399Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 30251..30399 +
1622930024.1107526-CDS-H-paniculata_contig331:31155..312561622930024.1107526-CDS-H-paniculata_contig331:31155..31256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 31156..31256 +
1691481114.9082983-CDS-H-paniculata_contig331:31155..312561691481114.9082983-CDS-H-paniculata_contig331:31155..31256Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 31156..31256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig331.8883.1

>prot_H-paniculata_contig331.8883.1 ID=prot_H-paniculata_contig331.8883.1|Name=mRNA_H-paniculata_contig331.8883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
RRCGRVFLAGADAPRGYAASSISQRACDNLRCTDCNFKVMCFSGKAWDVA
TDYIFLRNNAPDLDKLCARLQPSSDVCAYACQCSWQNVVELNSLSPTGRP
PWTCGGH*
back to top

mRNA from alignment at H-paniculata_contig331:29976..31256+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig331.8883.1 ID=mRNA_H-paniculata_contig331.8883.1|Name=mRNA_H-paniculata_contig331.8883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1281bp|location=Sequence derived from alignment at H-paniculata_contig331:29976..31256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGATGCGGAAGGGTATTTTTAGCTGGAGCAGATGCGCCAAGAGGGTA TGCGGCATCATCTATATCGCAGCGGTGAGGAATTCCATCTCCCTTTGTGT CTTTCTCTCTGCCACTTTGTGAGGCCAGGCAGCCACTTACGCACAGCTTG CCCAACTCATAGCTCCTCGTTTTAGCGTCACTCTACGACGTCCGTAGCGC ATAATAAAAGCCGGCCGTGTTTGTGACTGTCTCCTCGCTTGGGCGCTCCT CGCCTTGGCACCGTGTGCTCAGCAGCGCGTGCGACAACTTACGGTGCACG GATTGCAATTTCAAAGTCATGTGCTTTTCCGGGAAAGCATGGGATGTCGC CACAGACTACATTTTCTTGAGAAACAATGCGCCAGACCTCGACAAGCTTT GCGCGAGGCTGCAGCCTTCTTCAGGTGGGCTTTACAACAGAAGTCCTCCG CCATAGTGAAACATGATACATACATAAATGTGAAATCACAGTTACCTTAA ATGGCGACAGCCGTAAAAGTCCACTTTCACATCTTGCTTTATATTTAGAC AGAGCTCTGAGAAAAAGCGCAATGATTCAACCAGCATGGACGGGTTCATT GGAAAGCTCTGCATAGCAGCTTTCCGATGGTCTTCGCTGTTTCCCAATCC AATGAAACGGTTCTCAGAAGATCCTTGAAAATCGCGGCGAGACTTCCGAA TTCTGATTGTTTCTTGATTTATGACGTGAAAATCGCTCGATGAGAAGAAA AACACGTCTACGAAGATTGTGTTATTAGCTTTTCTACGATACCCTGCACA CAACGCAGACCCCTACATCATGGGTTCCCACCGCCCAATATCCTTCAGCT GTATGACTGCGGGCACTTCAGCCCGTGGCTAGCCGCGCTAAGCCAGCATA AAGCCATACAATTTTGTCACTTGACACACCGTTGGAGCACAGAACTACAC TACAAGACTAGCATATGAATTGCTATCGAGAAACGTCACACCTATGTATC CACCTTTGTTAAACCTTTGGATGGTCGACACATTCTTCAGCTCTATACTG TTGTACACGGACGTTACATAGTACCGATACGGCAACCAGCATTATCCTCG ATGTCTCAACACTATGGTGTATCCCTCTCCCTTTTTTGCCCCCCTATTAC GCTCTGTATTCTTTTCTGCGCGTGTCCCAGACGTTTGCGCATATGCCTGT CAGTGCTCTTGGCAGAATGTGGTGGAACTAAATAGCCTTTCGCCGACGGG ACGCCCGCCGTGGACTTGTGGTGGCCATTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig331:29976..31256+

>mRNA_H-paniculata_contig331.8883.1 ID=mRNA_H-paniculata_contig331.8883.1|Name=mRNA_H-paniculata_contig331.8883.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig331:29976..31256+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGAGATGCGGAAGGGTATTTTTAGCTGGAGCAGATGCGCCAAGAGGGTA
TGCGGCATCATCTATATCGCAGCGAGGAGATGCGGAAGGGTATTTTTAGC
TGGAGCAGATGCGCCAAGAGGGTATGCGGCATCATCTATATCGCAGCGCG
CGTGCGACAACTTACGGTGCACGGATTGCAATTTCAAAGTCATGTGCTTT
TCCGGGAAAGCATGGGATGTCGCCACAGACTACATTTTCTTGAGAAACAA
TGCGCCAGACCTCGACAAGCTTTGCGCGAGGCTGCAGCCTTCTTCAGCGC
GTGCGACAACTTACGGTGCACGGATTGCAATTTCAAAGTCATGTGCTTTT
CCGGGAAAGCATGGGATGTCGCCACAGACTACATTTTCTTGAGAAACAAT
GCGCCAGACCTCGACAAGCTTTGCGCGAGGCTGCAGCCTTCTTCAGACGT
TTGCGCATATGCCTGTCAGTGCTCTTGGCAGAATGTGGTGGAACTAAATA
GCCTTTCGCCGACGGGACGCCCGCCGTGGACTTGTGGTGGCCATTAGACG
TTTGCGCATATGCCTGTCAGTGCTCTTGGCAGAATGTGGTGGAACTAAAT
AGCCTTTCGCCGACGGGACGCCCGCCGTGGACTTGTGGTGGCCATTAG
back to top