mRNA_H-paniculata_contig331.8882.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig331.8882.1
Unique NamemRNA_H-paniculata_contig331.8882.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: D8LN12_ECTSI (Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN12_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 2.770e-104
Identity = 161/195 (82.56%), Postives = 173/195 (88.72%), Query Frame = 1 
Query:    1 GMPSDERTPQSMMNTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            GM + ERTPQSMMNTLDEPV ET+MRDLRSVG+KLKIVL+PRGDQ+GVL KLKDWDLWGPLMVCL LSI+LS SA  DQG+LVFAAVFVVVWCGAALVTLNAQLLGG ISFFQSVCVLGYCVFPLLVSAV+CL+L      ++  RV  VL GFVWATRASKVFISEIISDERKMLAVYPV FFYTFISWMIV+ 
Sbjct:   15 GMQTAERTPQSMMNTLDEPVSETIMRDLRSVGAKLKIVLNPRGDQDGVLTKLKDWDLWGPLMVCLTLSIVLSVSAPADQGALVFAAVFVVVWCGAALVTLNAQLLGGTISFFQSVCVLGYCVFPLLVSAVVCLILSLFNFMNVFVRVAVVLVGFVWATRASKVFISEIISDERKMLAVYPVFFFYTFISWMIVIH 209
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: A0A7S1UDR8_9STRA (Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDR8_9STRA)

HSP 1 Score: 267 bits (682), Expect = 2.430e-86
Identity = 132/185 (71.35%), Postives = 156/185 (84.32%), Query Frame = 1 
Query:   31 SMMNTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            +M  TLDEPV ET+MRDLR V  KLK+VL PR DQEGV++KLKDWDLWGPL+VCL LS+LLS +A E Q +LVFA+VF V+WCGAA+VTLNAQLLGG ISFFQSVCVLGYCVFPL ++A++C+ L   GLGHI  R + V+ GFVWATRAS VFI++II  ERK+LAVYPV FFYTF+SWMI+LQ
Sbjct:    8 AMPTTLDEPVSETIMRDLRQVADKLKVVLLPREDQEGVVQKLKDWDLWGPLLVCLTLSLLLSVTAPESQKALVFASVFFVIWCGAAVVTLNAQLLGGTISFFQSVCVLGYCVFPLTIAAIVCVFLSLIGLGHIAVRCIVVVLGFVWATRASVVFIAKIIKAERKILAVYPVFFFYTFLSWMILLQ 192
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: A0A836CPM4_9STRA (Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPM4_9STRA)

HSP 1 Score: 258 bits (660), Expect = 7.320e-83
Identity = 130/182 (71.43%), Postives = 155/182 (85.16%), Query Frame = 1 
Query:   40 NTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            NTLDEPV ET+MRDLR VGSKLKIVL P+GDQEGVLKKLK+WDLWGPL+VCL LSI+LS +A  +QG+LVFA+VFVVVWCGAA+VT+NAQLLGG ISFFQSVCVLGYCVFPL++++  CL+ K    G    R + V+ GF+W+TRAS VFI +IIS ERK+LAVYPV FFY F+SWM++LQ
Sbjct:   22 NTLDEPVSETIMRDLRQVGSKLKIVLMPKGDQEGVLKKLKEWDLWGPLLVCLVLSIMLSSTAPANQGALVFASVFVVVWCGAAMVTVNAQLLGGGISFFQSVCVLGYCVFPLVLASAACLIAKALT-GLFFIRALLVVVGFMWSTRASVVFIKQIISPERKVLAVYPVFFFYAFLSWMVLLQ 202
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: A0A7S2V1N2_9STRA (Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1N2_9STRA)

HSP 1 Score: 244 bits (623), Expect = 2.620e-77
Identity = 127/181 (70.17%), Postives = 149/181 (82.32%), Query Frame = 1 
Query:   43 TLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            TLDEPV ET+MRDL+ V  KLK+VL PR +Q+GVL KLK+WDLWGPLMVCL LS+LL  +A  DQ +LVFAAVFVVVW GAA+VTLNAQLLGG ISFFQSVCVLGYCVFPL V A++ LL++     +I  ++V V  GF WATRAS VFI++IIS +RK+LAVYPV FFYTFISWMIV+Q
Sbjct:   19 TLDEPVSETIMRDLKQVYGKLKVVLLPRENQQGVLHKLKEWDLWGPLMVCLTLSMLLCATAPADQTALVFAAVFVVVWVGAAIVTLNAQLLGGTISFFQSVCVLGYCVFPLTVVALVLLLVRLLIFNNIFVKLVLVAIGFAWATRASVVFIAQIISPQRKILAVYPVFFFYTFISWMIVIQ 199
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: I2CPI6_NANGC (Protein YIPF n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPI6_NANGC)

HSP 1 Score: 233 bits (595), Expect = 5.810e-73
Identity = 117/181 (64.64%), Postives = 149/181 (82.32%), Query Frame = 1 
Query:   43 TLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            TLDEPV +TV RDL  VGSKL++VL PR +Q+GVLKKLKDWDLWGPL+VCL LSILLS +A E+QG+LVFAAVF VVW GAA+VT+NAQLLGG ISFFQS+C+LGYCVFPL ++A+  LL+       ++ + V V  GF WATRAS VFI ++I+ ERK+LA++PV FFYTF++W++++Q
Sbjct:   28 TLDEPVWQTVKRDLTQVGSKLQVVLLPRENQDGVLKKLKDWDLWGPLLVCLTLSILLSITAPEEQGALVFAAVFFVVWFGAAVVTMNAQLLGGTISFFQSLCILGYCVFPLDIAALANLLIGL-AFQSLVVKAVVVAVGFAWATRASVVFIGQVIAPERKVLALFPVFFFYTFLAWLVLIQ 207
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: A0A1V9Z1I2_9STRA (Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z1I2_9STRA)

HSP 1 Score: 226 bits (576), Expect = 2.890e-70
Identity = 109/184 (59.24%), Postives = 145/184 (78.80%), Query Frame = 1 
Query:   34 MMNTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            ++NTLDEPV ET+MRD+R VGSKLK+VL P+   +  L+ L+DWDLWGPLMVCL LSI+LS +A  +Q ++VF +VFVVVW GAA+VT+NAQLLG  ISFFQS+CVLGYCVFPL+++ + C L +     H+  R+V V  GF+W+TRAS VF+S+++  ++K L VYPV+ FY FISWMI++Q
Sbjct:   13 VVNTLDEPVSETIMRDVRLVGSKLKVVLAPKNTSDETLQALRDWDLWGPLMVCLTLSIMLSMTAPTNQSAMVFTSVFVVVWVGAAVVTINAQLLGSTISFFQSICVLGYCVFPLVIATIACFLTRVVS-SHVAIRLVFVGIGFIWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILIQ 195
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: A0A067CCZ0_SAPPC (Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CCZ0_SAPPC)

HSP 1 Score: 225 bits (573), Expect = 8.200e-70
Identity = 110/182 (60.44%), Postives = 143/182 (78.57%), Query Frame = 1 
Query:   40 NTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            NTLDEPV ET++RD+R VGSKLK+VL PR   +  L+ L+DWDLWGPLMVCL LSILLS +A  +Q ++VF +VFVVVW GAA+VT+NAQLLG  ISFFQS+CVLGYCVFPL+++ + C L +     H+  R++ V  GFVW+TRAS VF+S+++  ++K L VYPV+ FY FISWMI++Q
Sbjct:   15 NTLDEPVSETILRDVRLVGSKLKVVLMPRNTSDETLQALRDWDLWGPLMVCLMLSILLSLTAPANQSAMVFTSVFVVVWVGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLACFLTRVVS-SHVTIRLILVGVGFVWSTRASVVFMSQLVPPKKKALTVYPVLLFYIFISWMILIQ 195
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BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: F0Y2B8_AURAN (Protein YIPF n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y2B8_AURAN)

HSP 1 Score: 224 bits (570), Expect = 2.110e-69
Identity = 119/181 (65.75%), Postives = 143/181 (79.01%), Query Frame = 1 
Query:   43 TLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            TLDEPV ET+MRDLR VG+KLK+V+ PR  QEGVL +LK+WDLWGPL VCLALSI+LS SA E Q +LVFAAVFVVVW GAA+VTLNAQLLGG+ISFFQSVC+LGY +FPL V A+LCL+L       +L R + V   F W+TR S VF  EII  +R+ LA+YPV  FY+FI+WMI++Q
Sbjct:   12 TLDEPVRETIMRDLREVGAKLKLVILPRVSQEGVLDRLKEWDLWGPLAVCLALSIVLSVSAPEAQRALVFAAVFVVVWVGAAIVTLNAQLLGGRISFFQSVCILGYSIFPLNVGALLCLVLHPVT-KSLLLRALVVGVCFAWSTRVSVVFFGEIIEAKRRALAIYPVFGFYSFIAWMILIQ 191
[Close]
BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: A0A485KII9_9STRA (Protein YIPF n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485KII9_9STRA)

HSP 1 Score: 223 bits (568), Expect = 5.490e-69
Identity = 105/186 (56.45%), Postives = 143/186 (76.88%), Query Frame = 1 
Query:   28 QSMMNTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            Q    TLDEPV ET++RD+R VGSKLK+VL P+   +  L+ L+DWDLWGPL+VCL LSI+LS +A  +Q ++VF  VFVVVW GAA+VT+NAQLLG  ISFFQS+CVLGYCVFPL+++ ++  + +   LGH+  R+V V  GF+W+TRAS VF+S+++  +R+ L VYPV+ FY FI+WMI++ 
Sbjct:   15 QKKETTLDEPVSETILRDVRLVGSKLKVVLMPKNTSDQTLQALRDWDLWGPLLVCLVLSIMLSITAPTNQSAMVFTGVFVVVWAGAAVVTVNAQLLGSTISFFQSICVLGYCVFPLVIATLVNTVFRLASLGHVAVRIVIVAVGFIWSTRASVVFMSQLVPPKRQALTVYPVLLFYLFIAWMILIS 200
[Close]
BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Match: M4BIG2_HYAAE (Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIG2_HYAAE)

HSP 1 Score: 220 bits (561), Expect = 7.850e-68
Identity = 108/187 (57.75%), Postives = 142/187 (75.94%), Query Frame = 1 
Query:   25 PQSMMNTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKKLKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLNAQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVLAGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ 585
            P +  NTLDEPV +T++RDLR VG KL++VL P    E  LK L+DWDLWGPL++CL LSI+LS +A   Q ++VF  VFVV+W GAA+VT+NAQLLG  ISFFQSVCVLGYCVFPL ++ ++C+L +   + HIL RV  V  GF+W+TRAS VF+S+++  +RK L VYPV+ FY  ISWM+++Q
Sbjct:   22 PSTATNTLDEPVSDTILRDLRLVGGKLRVVLMPSNTSEETLKALRDWDLWGPLLLCLTLSIMLSVTAPAAQSAMVFTGVFVVIWMGAAIVTVNAQLLGSSISFFQSVCVLGYCVFPLNIATLVCMLTRV-AISHILLRVFVVGVGFLWSTRASVVFMSKLVPPKRKALTVYPVLLFYLVISWMVLIQ 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig331.8882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN12_ECTSI2.770e-10482.56Protein YIPF n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A7S1UDR8_9STRA2.430e-8671.35Protein YIPF n=1 Tax=Phaeomonas parva TaxID=124430... [more]
A0A836CPM4_9STRA7.320e-8371.43Protein YIPF n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2V1N2_9STRA2.620e-7770.17Protein YIPF n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
I2CPI6_NANGC5.810e-7364.64Protein YIPF n=1 Tax=Nannochloropsis gaditana (str... [more]
A0A1V9Z1I2_9STRA2.890e-7059.24Protein YIPF n=1 Tax=Thraustotheca clavata TaxID=7... [more]
A0A067CCZ0_SAPPC8.200e-7060.44Protein YIPF n=3 Tax=Saprolegniaceae TaxID=4764 Re... [more]
F0Y2B8_AURAN2.110e-6965.75Protein YIPF n=1 Tax=Aureococcus anophagefferens T... [more]
A0A485KII9_9STRA5.490e-6956.45Protein YIPF n=2 Tax=Aphanomyces TaxID=100860 RepI... [more]
M4BIG2_HYAAE7.850e-6857.75Protein YIPF n=1 Tax=Hyaloperonospora arabidopsidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig331contigH-paniculata_contig331:22272..26235 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score309.7
Seed ortholog evalue9.8e-82
Seed eggNOG ortholog2880.D8LN12
Preferred nameYIPF6
Hectar predicted targeting categoryother localisation
GOsGO:0000138,GO:0002064,GO:0002065,GO:0002066,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005795,GO:0005797,GO:0005798,GO:0005801,GO:0005802,GO:0007275,GO:0008150,GO:0009888,GO:0009987,GO:0012505,GO:0030134,GO:0030135,GO:0030154,GO:0030855,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0035295,GO:0042802,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048565,GO:0048731,GO:0048856,GO:0048869,GO:0055123,GO:0060429,GO:0060575,GO:0060576,GO:0097708,GO:0098791
EggNOG free text desc.intestinal epithelial cell development
EggNOG OGsCOG5080@1,KOG2946@2759
Ec32 ortholog descriptionterbinafine resistance locus protein (yip1)
Ec32 orthologEc-27_000980.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1008
Cds size585
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.8937337-UTR-H-paniculata_contig331:22271..226911622930023.8937337-UTR-H-paniculata_contig331:22271..22691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 22272..22691 -
1691481114.8175664-UTR-H-paniculata_contig331:22271..226911691481114.8175664-UTR-H-paniculata_contig331:22271..22691Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 22272..22691 -
1622930024.0259604-UTR-H-paniculata_contig331:26232..262351622930024.0259604-UTR-H-paniculata_contig331:26232..26235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 26233..26235 -
1691481114.8799636-UTR-H-paniculata_contig331:26232..262351691481114.8799636-UTR-H-paniculata_contig331:26232..26235Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig331 26233..26235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930023.9122534-CDS-H-paniculata_contig331:22691..228011622930023.9122534-CDS-H-paniculata_contig331:22691..22801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 22692..22801 -
1691481114.8392584-CDS-H-paniculata_contig331:22691..228011691481114.8392584-CDS-H-paniculata_contig331:22691..22801Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 22692..22801 -
1622930023.9262798-CDS-H-paniculata_contig331:23153..233051622930023.9262798-CDS-H-paniculata_contig331:23153..23305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 23154..23305 -
1691481114.848487-CDS-H-paniculata_contig331:23153..233051691481114.848487-CDS-H-paniculata_contig331:23153..23305Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 23154..23305 -
1622930023.9857538-CDS-H-paniculata_contig331:24944..251071622930023.9857538-CDS-H-paniculata_contig331:24944..25107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 24945..25107 -
1691481114.8557749-CDS-H-paniculata_contig331:24944..251071691481114.8557749-CDS-H-paniculata_contig331:24944..25107Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 24945..25107 -
1622930024.0014198-CDS-H-paniculata_contig331:25626..257171622930024.0014198-CDS-H-paniculata_contig331:25626..25717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 25627..25717 -
1691481114.864952-CDS-H-paniculata_contig331:25626..257171691481114.864952-CDS-H-paniculata_contig331:25626..25717Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 25627..25717 -
1622930024.0129569-CDS-H-paniculata_contig331:26163..262321622930024.0129569-CDS-H-paniculata_contig331:26163..26232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 26164..26232 -
1691481114.872528-CDS-H-paniculata_contig331:26163..262321691481114.872528-CDS-H-paniculata_contig331:26163..26232Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig331 26164..26232 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig331.8882.1prot_H-paniculata_contig331.8882.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig331 22692..26232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig331.8882.1

>prot_H-paniculata_contig331.8882.1 ID=prot_H-paniculata_contig331.8882.1|Name=mRNA_H-paniculata_contig331.8882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=195bp
MPSDERTPQSMMNTLDEPVLETVMRDLRSVGSKLKIVLDPRGDQEGVLKK
LKDWDLWGPLMVCLALSILLSFSAHEDQGSLVFAAVFVVVWCGAALVTLN
AQLLGGKISFFQSVCVLGYCVFPLLVSAVLCLLLKFCGLGHILYRVVCVL
AGFVWATRASKVFISEIISDERKMLAVYPVIFFYTFISWMIVLQ*
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mRNA from alignment at H-paniculata_contig331:22272..26235-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig331.8882.1 ID=mRNA_H-paniculata_contig331.8882.1|Name=mRNA_H-paniculata_contig331.8882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3964bp|location=Sequence derived from alignment at H-paniculata_contig331:22272..26235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGATGCCATCAGACGAACGAACACCGCAAAGCATGATGAATACGCTGGA
CGAGCCAGTCTTGGAAACTGTGGTGAGCACTTTGAATGTACACAAGGGAG
GTGCCACGTTACGTTCAACCGATGTACCATACAAACTGTGGACTTACAAT
CCCGCAGTCTTCTCCTCGGGGACTTCTCTCTGCATTGGCCCGAAATATGT
AATCCAGTATGCGTTATTAGTTCGCCCAAACCCCAAACGAAAGTGCCAAG
CACTTTCCAGGAAGTCGATCATTGGGACACAACTAGATGCAAATTCCCGT
AAATCTGTCACATACATCGTAGTATGATTAGTGACCTTCTCTGACCCATG
CGACTGTACCTACGCTACAGTACCATATGATTTTTGGCAGCACAGCAAGA
CCCAAAGTGAGGTGTGGCCCTTCCTCCATAAAAGTGTCGTCTTGAGAAGG
AGATGCAAATTTGTCCCTCAAGTCATCGATACTGACGCCTCCATTGTGTT
TTGGGTGCGATGGTTCAGATGCGAGACCTGCGCTCCGTGGGATCAAAGCT
CAAGATTGTACTCGACCCACGGGGAGACCAAGAAGGAGTGCTGAAGAAGC
TCAAAGATTGTAAGGAAAACGCTTTCATCCTGGCAAGAGCACGCGCTATT
GTTTCTTTTTTGAGATGATATTGTCCCGATGTTGATGGTTGGCTTCCTAG
TGGGCCTTCGGCTGTACTGATATTTCCTTCAGTAATGAGCCGTTTACATG
ACTGCGCGGATGAAACGCATGTGGTGCCAAATGGAAAGCATGACACAGGG
CGAATATCGGTTTTGTTGTTAAAAAAACAGTCCACCCGTGGCGAACAAGT
GCAGCCCCGTACCCGTGCTCGGTGGACTATTGCAAAGCCTCTACCCAGGC
AAGCTGCCGATCGACGCCCTGGGGCATGAGCGTTGTAGTGGTATGTGACG
GGATCAAGACCCAATTGATGCCCCCCCCCTTCCCCCTGCCCCCCTTGCCC
TTGCCCTCTTTACGCGTGGTCGCAGATATAATAACTACGGCATGACAAAA
CATGAATACGCGCCCCCCCCCCCATCCCCCGCTTCCCTTCTTCCGCCCCT
TCGTCTCCGTTTCCGCTTGCCTCAATAGGGGATTTGTGGGGACCGCTCAT
GGTCTGTCTGGCCTTATCCATCTTACTGAGTTTCTCCGCTCACGAGGACC
AGGGATCGTTGGTGTTTGCGGCGGTGTTCGTCGTGGTCTGGTGTGGGGCA
GCCCTCGTGACACTAAACGCGCAGCTCTTGGGCGGAAAGATGTAAGTCGA
CTGTAAAACGGTAGGCAGCTGTTTCACATGTACATACGGTACCGTACTGC
GTTTCAGGGGGCCATAACGCGGGAATAAGTGCGGGTCATGGTGCTGAAAT
TTTCTTGCATCATGCTCAAAACGTCTGTTTTCGACGGCGGCAAGTTGGAA
CATCACATCAATGGCGGTGCTTTGGTGAAGTGGAGAAAATGACCTCTATG
GAAAAATATGCACCATTTGTAACTTGTGATAGGATTGACGAAAAAACGAC
GTATCTATGCATGTACATATATAGACAGAATCCTCCTGAAGCAAAAAGTG
TGTATGCAAACTAAAAAAAATAGAAAAAGAGGTCTCCATGTAGGCAAATT
TTCGCAACAAATTTGTTTTTCGTTTTTTTTCATCAAATTTTAGAAATTTT
TGATGTTGTAGCTCTGGAGTTATTGTGCTTTTTTTAGAGTCCAAAACTTA
AAAGGACGCTAATATTGTATATATCATGTGCCTTTCGCCAATCAAGAGGT
CAACAACCACGTTATAGGAAATTTACTGTAAATACTGGATGCAACACTAC
AACTAACTATTATTTCATGTTGAGATGGTACGCTGTACCTACACCAGCGC
CCGAAAGTCGCGCTATGACCGATGACCCCAGATCAGGCCTGCCATTTTCA
TTACCGTGAAATATACCTCTCACTCGATACAGCACATACATATGCCGGAG
AATGTCCCGCAAGCAGGTCGCAACCCCTTTTACAGAATACAAACCTCACG
TAACACAATCTAAATTTACAACTTACTATTTACATCTCATCGCACGCAAG
AACACTCCGCAAACAACGATCTGCATGTAACAACCTCCTCTCTTCAGCAC
CATTAATGTACTAGTGGCAATATATATGCGTTTCAGAAAAATAATGACTA
AATCGTCGCGTCATCTTGAATTTTGTAGACCTGGTTGGCATGCAAATCAC
AGCCCATGCCAGATAAAGTTTGGGAGCGGACATAACAGGCTCCTCGAATC
TCTTCGTATGTTTTTGCATTCATGGTTGGTGACGAGATAAAACACGAAAA
ACTCGCTTCCAGAACAGTGCGATTTGTAAAAAGGCGTATTGTCGGCGAAG
AACCGAAAATGCATAAAATCTGGTAATCACATCGGAAAGCTGGTGTAGAG
AGCTTGCACGCAGTATAGGTTTCGACCTCAGAGGCGTGTGTTTACCACAC
AAAAGCCCCCTCCAAAGCGCCACAAAATAGGATTCATTTCCGCCATTTTA
CACAGTTCTTGTTCTTTTCTGAGGTCCTGACCAAGCTCGTACGCTGTGCA
AAGAGGCCGGTAGTTTTGATGAGGATCAATTTTCACTTTTGTTGCACGGA
GAACTGCAATTATAGCTTGGAATTCTCTAGGGGACCAGTTGTCCAGATGT
TGTCAACTTCCGTTGCCTGTTATGATTCAAGTGTTCAGTTGGGCGTCGTT
CAACTTTTTCTGCCGGTCTACGAAGACATGCTTTCGTATTCCGAATAGAT
GAGGTTAGGCAAACAGGAAGACTTCGTATTATTCACTCAGTTATCACTAA
ACTCTTCTCCGTTTTCCTCACCCCAACATTTTGCTGTTGTTTCCCCTTGA
ATCCCCGATCGCAAATAATGTGGAGCGCAGTTCCTTCTTTCAGAGCGTGT
GCGTACTTGGATATTGCGTGTTCCCGCTTCTCGTATCTGCGGTGCTCTGT
CTGTTGCTCAAGTTCTGCGGACTTGGTCATATCCTCTACCGTGTGGTGTG
TGTGCTCGCGGGATTTGTGTGGGCAACAAGAGGTACGATATCTTAGGCGG
ACGAACTTGGCTTGGTTGCCGTGATGGGCTGATGTTTATCAGAGAAAATG
CCCTTGTGTTGAATGAGCTCGAGTTGGGGTCGCCGTCGCAATGTCGCATC
TTGGCGCAGTGAATGAAAGAGGTTTGTGGCGATTCTTACTTTGTTGTCGA
ATTCGTTTCGTAAGTGCTGTGTACGCTTGTGAAAAAAATTGTGATCAGCG
TGAGGGCCTTCGCGTATTTTCGACCTGTTGTACCTTTCGTCAAAATGTGT
TGTCTTGGCTCCTTCTCACCTTGATGCCCCTCCCCCCTCTGTTCTGTTGC
TGCCCGCGCTTCTCAAACACGCGAACGAAATCAGCTTCTAAGGTATTCAT
CTCGGAGATCATATCGGACGAACGCAAGATGCTGGCGGTTTACCCTGTCA
TATTCTTCTACACTTTCATCAGCTGGATGATTGTCCTGCAATAGTAATAG
AGTGATCTGTTAAAGCGCTTCGCAACGATGACAGCACACGTCTTACTATT
CTCGTTGACCCTTGTGTCCCCCAGTCCCGTAAGCTCGCGAATTGAAGTGT
CTTCGCGGCCGCTTGGCAGAAAAGTGGCATGTAAATGTGTCGTGTACCAG
ACTTGTTTCGTGTTTTTTTTTCTCCTGTATGGGAGCGTAGTCCCTGTTGC
GCGGTCGAAGCTTATTTTTCTGCTGCATGCTCCATGTGTAATCTGTGAGG
GTTCCGTTTCGCGTCCCATTGCGTACTGTAGGGAGAGCTTTAGATGGACA
CGGTTTATTTATGTAGTAATAATTTGCATGTGCTGCGATGGAAGCTTGGT
TGCCCCATACAACAAGGGCTAAATACATAAGTAACTATTTCTTTTCTGAT
TGCTGTAGTGTTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig331:22272..26235-

>mRNA_H-paniculata_contig331.8882.1 ID=mRNA_H-paniculata_contig331.8882.1|Name=mRNA_H-paniculata_contig331.8882.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1170bp|location=Sequence derived from alignment at H-paniculata_contig331:22272..26235- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCATCAGACGAACGAACACCGCAAAGCATGATGAATACGCTGGACGA
GCCAGTCTTGGAAACTGTGATGCCATCAGACGAACGAACACCGCAAAGCA
TGATGAATACGCTGGACGAGCCAGTCTTGGAAACTGTGATGCGAGACCTG
CGCTCCGTGGGATCAAAGCTCAAGATTGTACTCGACCCACGGGGAGACCA
AGAAGGAGTGCTGAAGAAGCTCAAAGATTATGCGAGACCTGCGCTCCGTG
GGATCAAAGCTCAAGATTGTACTCGACCCACGGGGAGACCAAGAAGGAGT
GCTGAAGAAGCTCAAAGATTGGGATTTGTGGGGACCGCTCATGGTCTGTC
TGGCCTTATCCATCTTACTGAGTTTCTCCGCTCACGAGGACCAGGGATCG
TTGGTGTTTGCGGCGGTGTTCGTCGTGGTCTGGTGTGGGGCAGCCCTCGT
GACACTAAACGCGCAGCTCTTGGGCGGAAAGATGGGATTTGTGGGGACCG
CTCATGGTCTGTCTGGCCTTATCCATCTTACTGAGTTTCTCCGCTCACGA
GGACCAGGGATCGTTGGTGTTTGCGGCGGTGTTCGTCGTGGTCTGGTGTG
GGGCAGCCCTCGTGACACTAAACGCGCAGCTCTTGGGCGGAAAGATTTCC
TTCTTTCAGAGCGTGTGCGTACTTGGATATTGCGTGTTCCCGCTTCTCGT
ATCTGCGGTGCTCTGTCTGTTGCTCAAGTTCTGCGGACTTGGTCATATCC
TCTACCGTGTGGTGTGTGTGCTCGCGGGATTTGTGTGGGCAACAAGAGTT
CCTTCTTTCAGAGCGTGTGCGTACTTGGATATTGCGTGTTCCCGCTTCTC
GTATCTGCGGTGCTCTGTCTGTTGCTCAAGTTCTGCGGACTTGGTCATAT
CCTCTACCGTGTGGTGTGTGTGCTCGCGGGATTTGTGTGGGCAACAAGAG
CTTCTAAGGTATTCATCTCGGAGATCATATCGGACGAACGCAAGATGCTG
GCGGTTTACCCTGTCATATTCTTCTACACTTTCATCAGCTGGATGATTGT
CCTGCAATAGCTTCTAAGGTATTCATCTCGGAGATCATATCGGACGAACG
CAAGATGCTGGCGGTTTACCCTGTCATATTCTTCTACACTTTCATCAGCT
GGATGATTGTCCTGCAATAG
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