mRNA_H-paniculata_contig3304.8869.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3304.8869.1
Unique NamemRNA_H-paniculata_contig3304.8869.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3304.8869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3304contigH-paniculata_contig3304:3337..5389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog2880.D8LJD7
Preferred nameDZIP1
KEGG koko:K16470
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
EggNOG free text desc.Zinc finger protein
EggNOG OGs28IYV@1,2QRAI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons4
Model size550
Cds size549
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3304.8869.1prot_H-paniculata_contig3304.8869.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3304 3337..5388 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.1893036-CDS-H-paniculata_contig3304:3336..33691622930022.1893036-CDS-H-paniculata_contig3304:3336..3369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 3337..3369 +
1691481113.9455974-CDS-H-paniculata_contig3304:3336..33691691481113.9455974-CDS-H-paniculata_contig3304:3336..3369Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 3337..3369 +
1622930022.204174-CDS-H-paniculata_contig3304:4171..44351622930022.204174-CDS-H-paniculata_contig3304:4171..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 4172..4435 +
1691481113.9562285-CDS-H-paniculata_contig3304:4171..44351691481113.9562285-CDS-H-paniculata_contig3304:4171..4435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 4172..4435 +
1622930022.2217708-CDS-H-paniculata_contig3304:4868..49631622930022.2217708-CDS-H-paniculata_contig3304:4868..4963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 4869..4963 +
1691481113.9653807-CDS-H-paniculata_contig3304:4868..49631691481113.9653807-CDS-H-paniculata_contig3304:4868..4963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 4869..4963 +
1622930022.234337-CDS-H-paniculata_contig3304:5231..53881622930022.234337-CDS-H-paniculata_contig3304:5231..5388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 5232..5388 +
1691481113.9744272-CDS-H-paniculata_contig3304:5231..53881691481113.9744272-CDS-H-paniculata_contig3304:5231..5388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 5232..5388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3304.8869.1

>prot_H-paniculata_contig3304.8869.1 ID=prot_H-paniculata_contig3304.8869.1|Name=mRNA_H-paniculata_contig3304.8869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
GEDAVQHAANQVETIRAELASTLTGKRVADIDMGKSISRTPLGGVGLGFK
AGSANGDIPSEAIFGTGSGDEAEEGPGLAELRRVVKERQQTRPEGIERQM
ANVSQSMEKQLSQLLEEAEEELDHLEQDSIGSDTYSSKDNETNDVHEESN
RRDSGSPSTRRTRQRDVGMATGFNEAVIQDKQG
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mRNA from alignment at H-paniculata_contig3304:3337..5389+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3304.8869.1 ID=mRNA_H-paniculata_contig3304.8869.1|Name=mRNA_H-paniculata_contig3304.8869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2053bp|location=Sequence derived from alignment at H-paniculata_contig3304:3337..5389+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAAGATGCTGTTCAACACGCAGCAAATCAGGTAACAAACATCACATG
AGTATTCTTATATCATCGTTGTCATGGGCGGGTCCAAGATATTGGCGACA
GCCGGATGCGTATTCGGAGGCACACACCATAAAATGATCTCAACGGTTCG
AATGGTAGAGCTCTCTACATAGCCACGTATGTGACGCATTTTAGTCACTT
TTGCAGGGGCAGGGGTGTTCGGAAAGCTGAAGTTAGCATTAGTTAGCTTG
CCTCTGCACCATGTACCTACTCAAGCATTTGGCAAAGCCTCAAAACTCGA
GTCAATTCTTTGTGGATCCAGTGCAGAACAAAGGATAAACATCCAATGAA
CGAACCTCTCTTCCTACGATCAGGTAGGATATCTGCTATACTAGGTATGT
GCTATCAGTGCGTGCGCCAACTACGTTCTTCTCAGTCCTTGCACGCGTCA
CAGAAGCAACCCAACCGCTCGACACATCGCAGTATGTAGGGTGACATCTC
TCAGAGGATCATTTTCAGGTGGTGCATTTGGTTCACTGAGGCACACGCTA
CCACCTATCTCTCGTGGTCTTGAAGTGCATTGCTGGGTAGTAGGGTATTT
TCAGGCAATCTACATCGCCCAATACCCATTCTTGATTCAACCGTTCACGG
AGGGAGTCCAAGGTTTACCGGGTGGCATCCATACAGCCCAAGTCTAATTA
CCGGAAACAGCATCCTTGAGATAGCGGACCCCCCTTCTACAGTCGTCAAA
AGCACAGCAACACAACAGGGCCAAATCATGAATTCCGCAGCTCAACTCGC
TGCTGCACTCAACACTCGGGATGCGATCTTTGTAGGTGGAAACGATCCGC
GCAGAGCTTGCGTCAACCCTCACAGGAAAGCGTGTAGCAGATATTGATAT
GGGCAAGAGCATTAGCAGGACGCCGCTCGGCGGCGTCGGGCTAGGTTTCA
AAGCTGGTTCAGCCAATGGCGACATACCTTCCGAGGCTATCTTCGGTACG
GGAAGTGGAGATGAAGCTGAGGAAGGTCCAGGCTTGGCGGAGTTAAGGCG
GGTAGTTAAGGAAAGACAGCAGACAAGGCCCGAGGGGATTGAACGGCAGG
TGAAACTGAAATGTTCTACTCGCTCCTGTCTTGCTCTAGTCCCGCACTTA
TCTGTACAATATTCCAGGGAGCCTTTCGTACCCTACTCCAGGCTTCCACT
CGAGACCCATACTTGCTGACGTAATCGAAGGGTGTATACGTATCCCGACC
ATTATCCTCATTCTTGTGATAGTTCTCTGAGTTAAGGTGGGTGTTAACGG
GAGTTGGTTTGACATAGTATGGTGATCAATGTAAGGTCGACTGCTATATT
TGTACACTGTAATTTCTCTGATTGGCAGCGACGGAGAATACCATCGACCT
TTCAAGTACAACCGTGGCATCTGAGTTGAGGACATTCCTCTTCAAGTAGT
GTAGATTCCTTGTGCTTGATTCATCTTAATAACTGAGCTACTAGTGAGCT
ACTAGTGACCAATCATTATACATTTCCCGCAGATGGCGAACGTGTCCCAG
TCGATGGAGAAGCAGTTGAGCCAATTATTAGAAGAAGCCGAAGAGGAGCT
AGATCATCTCGAGCAAGATTCGATTGGGTGCGTATTGTGGGCAGACCTGA
TCTCTGCTTCGTGTTACAAAAAAACTTGGTTCTGTTCGCGCTGCGCCATA
TTCCCTGGTTGATGTAGGGTGTATTATCGAGATCCACACTGCTGCTAGTA
GTATGCCGAGCTCGTTTGAATTCTTCTCCAAACCTTTTGCGTCACCAACG
ACCACTGGGGCAACTGTACGGTTCTTTTAGAAACAGCGCAACGATTTCCG
ACGAAACTCTTTGGCTGCCCCTTGTCGCCCGCTGTGGATGACCAGGAGCG
ACACGTACAGCTCAAAGGATAATGAAACAAATGATGTACACGAAGAAAGT
AACCGCAGGGACTCTGGCTCTCCCTCTACTCGAAGAACACGCCAACGCGA
CGTCGGCATGGCTACCGGCTTCAACGAGGCAGTTATCCAGGACAAACAGG
GCG
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Coding sequence (CDS) from alignment at H-paniculata_contig3304:3337..5389+

>mRNA_H-paniculata_contig3304.8869.1 ID=mRNA_H-paniculata_contig3304.8869.1|Name=mRNA_H-paniculata_contig3304.8869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig3304:3337..5389+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGAAGATGCTGTTCAACACGCAGCAAATCAGGGAGAAGATGCTGTTCA
ACACGCAGCAAATCAGGTGGAAACGATCCGCGCAGAGCTTGCGTCAACCC
TCACAGGAAAGCGTGTAGCAGATATTGATATGGGCAAGAGCATTAGCAGG
ACGCCGCTCGGCGGCGTCGGGCTAGGTTTCAAAGCTGGTTCAGCCAATGG
CGACATACCTTCCGAGGCTATCTTCGGTACGGGAAGTGGAGATGAAGCTG
AGGAAGGTCCAGGCTTGGCGGAGTTAAGGCGGGTAGTTAAGGAAAGACAG
CAGACAAGGCCCGAGGGGATTGAACGGCAGGTGGAAACGATCCGCGCAGA
GCTTGCGTCAACCCTCACAGGAAAGCGTGTAGCAGATATTGATATGGGCA
AGAGCATTAGCAGGACGCCGCTCGGCGGCGTCGGGCTAGGTTTCAAAGCT
GGTTCAGCCAATGGCGACATACCTTCCGAGGCTATCTTCGGTACGGGAAG
TGGAGATGAAGCTGAGGAAGGTCCAGGCTTGGCGGAGTTAAGGCGGGTAG
TTAAGGAAAGACAGCAGACAAGGCCCGAGGGGATTGAACGGCAGATGGCG
AACGTGTCCCAGTCGATGGAGAAGCAGTTGAGCCAATTATTAGAAGAAGC
CGAAGAGGAGCTAGATCATCTCGAGCAAGATTCGATTGGATGGCGAACGT
GTCCCAGTCGATGGAGAAGCAGTTGAGCCAATTATTAGAAGAAGCCGAAG
AGGAGCTAGATCATCTCGAGCAAGATTCGATTGGGAGCGACACGTACAGC
TCAAAGGATAATGAAACAAATGATGTACACGAAGAAAGTAACCGCAGGGA
CTCTGGCTCTCCCTCTACTCGAAGAACACGCCAACGCGACGTCGGCATGG
CTACCGGCTTCAACGAGGCAGTTATCCAGGACAAACAGGGCGAGCGACAC
GTACAGCTCAAAGGATAATGAAACAAATGATGTACACGAAGAAAGTAACC
GCAGGGACTCTGGCTCTCCCTCTACTCGAAGAACACGCCAACGCGACGTC
GGCATGGCTACCGGCTTCAACGAGGCAGTTATCCAGGACAAACAGGGC
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