mRNA_H-paniculata_contig330.8854.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig330.8854.1
Unique NamemRNA_H-paniculata_contig330.8854.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: D8LK47_ECTSI (PolyA_pol domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK47_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.610e-14
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   85 LRDENSEDRIMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLKAVL 333
             R+   E  ++ KYA   +AV  MGL  AW +  L  GN+++ EL + +GP++G+ M KQ  WQLEHP+GTRE C+ +L+A L
Sbjct:  625 FREGGKERAVIYKYAGLRKAVAGMGLERAWDMVPLARGNELMAELQLPKGPEIGKQMAKQASWQLEHPEGTREQCVAFLRATL 707
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: A0A7S2S954_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S954_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 8.230e-12
Identity = 29/78 (37.18%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:  112 IMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLKAVLEQEA 345
            ++ +Y  F  AV+ +GL   W +  L+ G  +   LG+ +GP++G++M  QVHWQ++HP GT   C+ +LK+  +Q A
Sbjct:  578 VLERYRTFVTAVQELGLDQVWMLKPLLNGKQLSDALGLPKGPEIGKVMEAQVHWQIQHPQGTAPDCVEFLKSTSQQGA 655
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: A0A5M3N4P2_CONPW (Uncharacterized protein n=1 Tax=Coniophora puteana (strain RWD-64-598) TaxID=741705 RepID=A0A5M3N4P2_CONPW)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-6
Identity = 30/99 (30.30%), Postives = 50/99 (50.51%), Query Frame = 1 
Query:  124 YANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLK--------AVLEQEA*GNGYKANCNGRT*AAP 396
            + +F + V+ +GL  A   P LV G +V+  +  + GP    ++ + V WQLEHPDG++  C+++L         AV + +  G G K   N     +P
Sbjct:   96 FNHFIQRVQELGLDKAVDAPPLVNGREVLAVMNAKPGPWTRTVLDRVVEWQLEHPDGSKNECIKWLAEERDAGRLAVGDHQGAGMGSKRGKNNAEEGSP 194
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: A0A1Y2IXC8_PYCCO (PolyA_pol domain-containing protein n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2IXC8_PYCCO)

HSP 1 Score: 58.9 bits (141), Expect = 5.070e-6
Identity = 27/79 (34.18%), Postives = 44/79 (55.70%), Query Frame = 1 
Query:   91 DENSEDRIMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLKA 327
            D ++  + +A Y   A  +  + L  A     ++ G +V+  L    GP  GQ++T+ V WQLEHP+GT+E C  +L+A
Sbjct:  449 DVDAASKRIAAYNKLASRIEELNLPPAVDAKPILDGREVVEVLNASPGPWTGQVLTRVVEWQLEHPEGTKEECEAWLQA 527
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: A0A8H5I0I5_9AGAR (PolyA_pol domain-containing protein n=1 Tax=Gymnopus confluens TaxID=206315 RepID=A0A8H5I0I5_9AGAR)

HSP 1 Score: 58.9 bits (141), Expect = 5.220e-6
Identity = 29/81 (35.80%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:   82 GLRDENSEDRIMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLK 324
            GL +  + ++I A Y  F E V  + L  A     L+ G  V+  L  + GP  G ++ + + WQLEHP+G++E CL +LK
Sbjct:  488 GLNESAASEKI-ALYNKFVERVEELDLTAAADAKPLLDGGQVVTALNAKAGPWTGAVLARVIEWQLEHPNGSKEECLSWLK 567
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: A0A7H9HY43_9SACH (Uncharacterized protein n=2 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HY43_9SACH)

HSP 1 Score: 58.2 bits (139), Expect = 8.830e-6
Identity = 26/76 (34.21%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:  112 IMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLKAVLEQ 339
            IM +YA+F + V    L     +  L+ G D++  L ++ GP +G++  + + WQL+HP GT E  L Y+K++L +
Sbjct:  457 IMEQYASFYDYVYAEQLENCHDMKPLINGKDMVNMLKMKGGPWLGKINDRAIMWQLDHPSGTSEELLDYVKSILPE 532
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: A0A8H5G0V4_9AGAR (Uncharacterized protein n=1 Tax=Leucoagaricus leucothites TaxID=201217 RepID=A0A8H5G0V4_9AGAR)

HSP 1 Score: 57.8 bits (138), Expect = 1.200e-5
Identity = 27/77 (35.06%), Postives = 44/77 (57.14%), Query Frame = 1 
Query:  112 IMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQE-GPKVGQLMTKQVHWQLEHPDGTRESCLRYLKAVLEQ 339
            I+ KY NFA+ V  M L     +  ++ G++ +  L  +  GP +G++  K + WQLEHP+GT+  C+ +LK    Q
Sbjct:  460 IIEKYNNFAQEVEDMKLQEVGEMGYILDGHETVATLEAKSPGPWLGEVRNKLIEWQLEHPEGTKNDCIDWLKDQRRQ 536
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BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Match: UPI002008005C (uncharacterized protein n=1 Tax=Antrodia serialis TaxID=139415 RepID=UPI002008005C)

HSP 1 Score: 57.4 bits (137), Expect = 1.570e-5
Identity = 27/81 (33.33%), Postives = 42/81 (51.85%), Query Frame = 1 
Query:   85 LRDENSEDRIMAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQVHWQLEHPDGTRESCLRYLKA 327
            L DE      +A Y      V  +GL        ++ G +V+G L    GP V  +++  + WQL+HP+GT++ CL +LKA
Sbjct:  419 LLDETKASERIAVYNALVTKVEALGLTAMVDAKPMLNGREVLGALNAPPGPWVAPVLSSVMEWQLDHPEGTKDECLEWLKA 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig330.8854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LK47_ECTSI5.610e-1444.58PolyA_pol domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S2S954_9STRA8.230e-1237.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5M3N4P2_CONPW1.050e-630.30Uncharacterized protein n=1 Tax=Coniophora puteana... [more]
A0A1Y2IXC8_PYCCO5.070e-634.18PolyA_pol domain-containing protein n=1 Tax=Tramet... [more]
A0A8H5I0I5_9AGAR5.220e-635.80PolyA_pol domain-containing protein n=1 Tax=Gymnop... [more]
A0A7H9HY43_9SACH8.830e-634.21Uncharacterized protein n=2 Tax=Torulaspora TaxID=... [more]
A0A8H5G0V4_9AGAR1.200e-535.06Uncharacterized protein n=1 Tax=Leucoagaricus leuc... [more]
UPI002008005C1.570e-533.33uncharacterized protein n=1 Tax=Antrodia serialis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig330contigH-paniculata_contig330:39241..40889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue6.6e-13
Seed eggNOG ortholog2880.D8LK47
KEGG rclassRC00078
KEGG koko:K00974
KEGG ReactionR09382,R09383,R09384,R09386
KEGG Pathwayko03013,map03013
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CTP:tRNA cytidylyltransferase activity
EggNOG OGsCOG0617@1,KOG2159@2759
Ec32 ortholog descriptionPoly A polymerase, head domain
Ec32 orthologEc-06_008160.1
EC2.7.7.72
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons3
Model size953
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig330.8854.1prot_H-paniculata_contig330.8854.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig330 39846..40775 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.3362277-UTR-H-paniculata_contig330:39240..398451622930020.3362277-UTR-H-paniculata_contig330:39240..39845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 39241..39845 -
1691481113.1342475-UTR-H-paniculata_contig330:39240..398451691481113.1342475-UTR-H-paniculata_contig330:39240..39845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 39241..39845 -
1622930020.392991-UTR-H-paniculata_contig330:40775..408891622930020.392991-UTR-H-paniculata_contig330:40775..40889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 40776..40889 -
1691481113.1770766-UTR-H-paniculata_contig330:40775..408891691481113.1770766-UTR-H-paniculata_contig330:40775..40889Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig330 40776..40889 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.3511941-CDS-H-paniculata_contig330:39845..399291622930020.3511941-CDS-H-paniculata_contig330:39845..39929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 39846..39929 -
1691481113.1477394-CDS-H-paniculata_contig330:39845..399291691481113.1477394-CDS-H-paniculata_contig330:39845..39929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 39846..39929 -
1622930020.3648412-CDS-H-paniculata_contig330:40520..405891622930020.3648412-CDS-H-paniculata_contig330:40520..40589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 40521..40589 -
1691481113.1574628-CDS-H-paniculata_contig330:40520..405891691481113.1574628-CDS-H-paniculata_contig330:40520..40589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 40521..40589 -
1622930020.3800676-CDS-H-paniculata_contig330:40694..407751622930020.3800676-CDS-H-paniculata_contig330:40694..40775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 40695..40775 -
1691481113.1687446-CDS-H-paniculata_contig330:40694..407751691481113.1687446-CDS-H-paniculata_contig330:40694..40775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig330 40695..40775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig330.8854.1

>prot_H-paniculata_contig330.8854.1 ID=prot_H-paniculata_contig330.8854.1|Name=mRNA_H-paniculata_contig330.8854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MAKYANFAEAVRRMGLGTAWRIPTLVGGNDVIGELGVQEGPKVGQLMTKQ
VHWQLEHPDGTRESCLRYLKAVLEQEA*
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mRNA from alignment at H-paniculata_contig330:39241..40889-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig330.8854.1 ID=mRNA_H-paniculata_contig330.8854.1|Name=mRNA_H-paniculata_contig330.8854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1649bp|location=Sequence derived from alignment at H-paniculata_contig330:39241..40889- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTAGAAGCAGTTGCAAATACCAGTGGGGGGGGGGCGTCGCCAGGGGGGAA
ACGGGCGAGGGTCGAAGGAGACAGGAATGGCGGCCTTCGTGATGAGAATT
CGGAGGACAGGATCATGGCTAAATACGCAAATTTCGCAGAGGCTGTGCGA
CGCATGGGCTTGGGGACAGCGTGGCGCATCCCTACTCTCGTTGGCGTGAG
TTTTTGTTTACATTGAATCAGCGATGCTGTGTCTGGTGTTTGTCACGCGG
AAATTGTTGTCCTTGCCATTGTCTAATGTTTGTTTTTCGCTGTTTCGCAG
GGGAACGACGTGATCGGCGAACTTGGTGTCCAGGAGGGACCCAAGGTTGG
CCAACTCATGACCAAGCAGGTGTGTGTATCTGTGTGTCTGTGTGTGAAAC
GTGTGCGTAACAGGAGGTGGTTGTCGTATGCTGCCTACTCCATGTTGGTG
TTGTGTATTCACATGCGCACACTCCGAGAAATACTTTGGTAAAATACTCA
AGTATGGAAGCATCGGATAAAGGTTTTGGCCTTAGCTTTCCGGGGGTTAA
AAAAAATTAAAAAAATCGCACACTCCGTTGTAGGAAACAGATTTCTGATT
TGCTGTCAGATTTTGTACTGTCAACCTCAACTTGGAAGGACACGTCATGG
CTAACTTCCTGTTTTTTTCAGTATGGTGAGTATCGTGGTGACATGCATAG
GTATGTAGGTGCCGAGATAAAAATGTGCTGAGTACTCTTGGAACAACACC
ACGGGCACTTCGTGAATTACGTGAAATTGTGGAAACGAGCACTTGATGAA
GATTCCTCGAGGCATATGATACCTCGGTAGGTGTGCCATATAGATTTGCC
TTGGCATCTTTGCAACTCCATGATACGATTGCGCCCGTTGCATGCAAAGT
ACATTAGCTCCCCATTGGTTGCGGACTTGCCGTAATTTTGTTTCTTCCCT
TGTGTCCCAGGTTCACTGGCAGCTGGAACACCCCGACGGCACTAGAGAAT
CGTGCTTACGGTACCTCAAGGCTGTCTTGGAACAAGAGGCATAGGGGAAT
GGATACAAAGCAAACTGTAATGGAAGGACATGAGCAGCGCCTGGCAGATA
CCAATACTTAGAATTGTGGAGATAACCCTGTAAAAGGGGTAAAGTACCCG
ACAACACACAAAATTTGCGTTGGCGACATCGATAGATGACTTATTTACCT
CTCGTTCTGAAGGTCATGGGTTTCATTGACCCTGCTAGTAATGACCCAAC
GTCCGTCGAGGACAGGTACATGAATTTTTACAGAAAACGTGATATGTACG
CATCGGTAACGAAAGTCGAGATAAGATAAGAGATGTTGGTGAATCGACCA
CACGTGTGTACCATGTTTTTGTTCCAATGCTTACGTGGCAACCCTCGTCA
AACACGGCATTTTAAGGTCGTACCGCGCTGTACTGGAGGTCAATCTACCT
AATGTTGTCTCATACGAAGTTTTTTATTGGTTAAAAAGACCAGGATGGAT
TTCGTTGAGTTGTACCCAATGTTAGAACTGCTGGTTGCATAAGCTTTCTC
TTTTAGTAAGATGTTTCCACGCCCGCGCTCCTGTGTAGTCAAAAGTCTAC
CGTAGGCGCCGGAAAAGGGAAAAATCGAAGTAAAAACAGTGGTGTCACG
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Coding sequence (CDS) from alignment at H-paniculata_contig330:39241..40889-

>mRNA_H-paniculata_contig330.8854.1 ID=mRNA_H-paniculata_contig330.8854.1|Name=mRNA_H-paniculata_contig330.8854.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig330:39241..40889- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTAAATACGCAAATTTCGCAGAGGCTGTGCGACGCATGGGCTTGGG
GACAGCGTGGCGCATCCCTACTCTCGTTGGCATGGCTAAATACGCAAATT
TCGCAGAGGCTGTGCGACGCATGGGCTTGGGGACAGCGTGGCGCATCCCT
ACTCTCGTTGGCGGGAACGACGTGATCGGCGAACTTGGTGTCCAGGAGGG
ACCCAAGGTTGGCCAACTCATGACCAAGCAGGGGAACGACGTGATCGGCG
AACTTGGTGTCCAGGAGGGACCCAAGGTTGGCCAACTCATGACCAAGCAG
GTTCACTGGCAGCTGGAACACCCCGACGGCACTAGAGAATCGTGCTTACG
GTACCTCAAGGCTGTCTTGGAACAAGAGGCATAGGTTCACTGGCAGCTGG
AACACCCCGACGGCACTAGAGAATCGTGCTTACGGTACCTCAAGGCTGTC
TTGGAACAAGAGGCATAG
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