mRNA_H-paniculata_contig11382.884.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11382.884.1
Unique NamemRNA_H-paniculata_contig11382.884.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: D7FLT1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT1_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 1.290e-106
Identity = 161/224 (71.88%), Postives = 189/224 (84.38%), Query Frame = 3 
Query:   57 MACLNPPIADTLPHLTLPRHAVVLGLSGVANGREVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETST--YHATATPVINSTWRLSFRSGGFGTFLRAFYVALGRRRLVNPAVSAVAFGGSDEEWASLQATQVIQAVAVDPTDDTVLLSAAPVRATAPPVSLG 722
            MA LNPPIAD L  L LPRHAV++G S  + GREVL+ARR GMHLD++VPTVGRFR+ GD FLT+DR+VFCA +PH  QNGM+FKGFDIPL ++SGEKFEQPILFGANNLSG+VETN+AYAG  T  +   +HATATPVINS+WRLSFR+GGFGTFL AFY AL RRR V+P+V+AV F GS++EWASLQAT+V QAVA+DPTD TVLL+AAPV A+APP   G
Sbjct:    1 MASLNPPIADDLSQLALPRHAVIVGFSAGSGGREVLLARRDGMHLDLTVPTVGRFRTTGDAFLTTDRVVFCARKPHGSQNGMLFKGFDIPLQVLSGEKFEQPILFGANNLSGVVETNVAYAGSTTGATAPGFHATATPVINSSWRLSFRNGGFGTFLHAFYSALQRRRSVDPSVTAVTFAGSEDEWASLQATEVAQAVALDPTDGTVLLTAAPVAASAPPRPYG 224
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: A0A455AZA5_PHYMC (WW domain-binding protein 2-like n=1 Tax=Physeter macrocephalus TaxID=9755 RepID=A0A455AZA5_PHYMC)

HSP 1 Score: 68.2 bits (165), Expect = 4.240e-10
Identity = 47/127 (37.01%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:  156 EVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINST-WRLSFRSGGFGTFLRAFY 533
            EV   +R  +   ++ P     +  G  FL+S R+VF      K      F  F++PLH+IS  KFEQPI FGAN + G VE N                 TPV  +  WRL+F +GG GTFL  F+
Sbjct:   14 EVFFLKRDHVDFSLNGPGGSNMKGGGVFFLSSKRIVFLKKGDIKKH--AQFSSFEMPLHLISDAKFEQPI-FGANYMRGKVEPNAL-------------AETPVQGTCIWRLTFNAGGCGTFLNIFF 124
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: S8EWD4_TOXGM (Arabinogalactan protein, putative n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=S8EWD4_TOXGM)

HSP 1 Score: 64.7 bits (156), Expect = 4.690e-8
Identity = 61/188 (32.45%), Postives = 85/188 (45.21%), Query Frame = 3 
Query:  156 EVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGGFGTFLRAFYVALGRRRLVNPAVSAVAFGGSDEEWASLQATQVIQ----AVAVDPTDDTVLLSAAPVRATAP 707
            EV   +R  +   ++ PT  +    G+ FL+S R+VF   +   +     F  F+IPLH+IS  KFEQPI FGAN + G VE   +    I+ TS             W L+F +GG GTFL  F+      +L   AV          +  S +  Q +Q    A  VDP D + +    PV  T P
Sbjct:   24 EVFFLKRAHIDFKLTGPTTLKANG-GEFFLSSRRIVFV--KKGDVNKHKDFSSFEIPLHLISEPKFEQPI-FGANYMRGKVEPLESSENPISGTSK------------WFLTFNAGGCGTFLNVFF------KLWQYAVK--------HQPPSQELVQQLQLGNGAAFVDPNDPSTIYVTQPVPTTPP 181
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: A0A2D4C0E1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C0E1_PYTIN)

HSP 1 Score: 64.7 bits (156), Expect = 7.000e-8
Identity = 57/186 (30.65%), Postives = 87/186 (46.77%), Query Frame = 3 
Query:  141 VANGREVLMARRVGMHLDVSVPTVGR-FRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGGFGTFLRAFYVALGRRRLVNPAVSAVAFGGSDEEWASLQATQVIQAVAVDPTDDTVLLSAAPVR 695
            +AN  E+ +  R    +   V T+   F+  G V+ T+ R++F A +   +Q+G+ F+ F++PLH +  EKF QPI FGA ++SGLV      A    + S             W++ F +GG G  L  F   L +R+     V  +AF  S  +              VDP D TV+  A PV+
Sbjct:  192 LANDDELFILERA--KISFQVKTLDHTFKGKGRVYCTTQRIIFVAEKG-SLQHGLFFEAFEVPLHNMMDEKFNQPI-FGACSISGLVIPVDREAADDAKFS-------------WKIIFDNGGTGIVLPVFLRLLEKRK--RQEVIDMAFVQSQNK------------AFVDPNDPTVIYIAQPVK 346
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: A0A1R2CDA6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CDA6_9CILI)

HSP 1 Score: 63.9 bits (154), Expect = 9.020e-8
Identity = 65/212 (30.66%), Postives = 100/212 (47.17%), Query Frame = 3 
Query:   66 LNPPI-ADTLPHLTLPRHAVVLGLSGVANGREVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGGFGTFLRAFYVALG--RRRLVNPAVSAVAFGGSDEEWASLQATQVIQAVA-VDPTDDTVLLSAAP 689
            LNPP+ A+ +P       A V+G        E ++  R  +  ++++    +++  G ++LT+ RLVF   +   + +      FDIP+ ++S EKF QPI FGAN +SG V+              Y+       N+ ++  F SGG GTFL  FY  +   RRR  N +       G D  +    A+  IQ VA VDP D +V+    P
Sbjct:    3 LNPPVMANNMP-------APVIG--------EFMVLVRKDIEAEIALENGTKYKGKGRLYLTTIRLVFVNEKRSNISS------FDIPIDLMSHEKFNQPI-FGANYISGSVKP------------LYNLIP---CNAKFKFWFMSGGTGTFLPMFYGIVDQIRRRRANGS------NGPDPRFVESVASGNIQNVAYVDPNDPSVIFVLQP 171
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: A0A2A9MK49_9APIC (Putative arabinogalactan protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MK49_9APIC)

HSP 1 Score: 62.4 bits (150), Expect = 2.830e-7
Identity = 58/192 (30.21%), Postives = 84/192 (43.75%), Query Frame = 3 
Query:  156 EVLMARRVGMHLDVSVPTVGRFRSMGDVF-LTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGGFGTFLRAFY----VALGRRRLVNPAVSAVAFGGSDEEWASLQATQVIQAVAVDPTDDTVLLSAAPVRATAPPVS 716
            EV   +R   H+D  +      ++ G VF L+S R+VF   +   +     F  F++PLH++S  KFEQPI FGAN + G V+   +    ++ TS             W L+F +GG GTFL  FY     A+  +      V  +  G S              A  VDP D + +    PV A A P +
Sbjct:   24 EVFFLKRA--HIDFKLTGPTNLKASGGVFFLSSRRIVFV--KKGDVSKHKDFSSFELPLHLVSEPKFEQPI-FGANYMRGKVQPLESAENPLSGTSK------------WSLTFNAGGCGTFLNVFYKLWQYAIKHQPPSPELVQQLQLGNS--------------AAFVDPNDPSTIYVTQPVPAGASPAA 184
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: A0A2C6KJC8_9APIC (Arabinogalactan protein n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6KJC8_9APIC)

HSP 1 Score: 61.6 bits (148), Expect = 7.260e-7
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 3 
Query:  156 EVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGGFGTFLRAFY 533
            EV   +R  +   ++ PT  +  S G+ FL+S R+VF   +   +     F  F++PLH+++  KFEQPI FGAN + G V+   +    I+ TS             W L+F +GG GTFL  FY
Sbjct:   24 EVFFLKRGHIDFKLTGPTNLK-ASGGEFFLSSRRIVFV--RKGDVSKHKDFSSFELPLHLVTEPKFEQPI-FGANYMRGKVQPLESSENPISGTSK------------WSLTFNAGGCGTFLNVFY 133
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: F0VBG2_NEOCL (Arabinogalactan protein, putative n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VBG2_NEOCL)

HSP 1 Score: 56.2 bits (134), Expect = 3.680e-5
Identity = 62/202 (30.69%), Postives = 93/202 (46.04%), Query Frame = 3 
Query:  156 EVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHAT---------ATPVINS--TWRLSFRSGGFGTFLRAFYVALGRRRLVNPAVSAVAFGGSDEEWASLQATQVIQ----AVAVDPTDDTVLLSAAPVRATAPPVS 716
            EV   +R  +   ++ PT  +  S G+ FL+S R+VF   +   +     F  F++PLH+IS  KFEQPI FGAN + G V+   +    I  TS +  T         ++P+  S  +  ++  SGG GTFL  F+      +L   AV          +  S +  Q +Q    A  VDP D + +    PV A  PP +
Sbjct:   24 EVFFLKRAHIDFKLTGPTNLK-ASGGEFFLSSRRIVFV--KKGDVNKHKDFSSFELPLHLISEPKFEQPI-FGANYMRGKVQPLESAENPINGTSKWFLTFNAGNASSLSSPLYPSPASAPVAKLSGGCGTFLNVFF------KLWQYAVK--------HQPPSQELVQQLQLGNGAAFVDPNDPSTIYVTQPVPAGPPPAA 207
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BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Match: A0A059LIW5_9CHLO (Uncharacterized protein n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LIW5_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 4.310e-5
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 3 
Query:  156 EVLMARRVGMHLDVSVPTVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFEQPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGGFGTFLRAF 530
            E + A R G+ + VS      +R  G VFL++ R+VF + +P   + G+     ++PL  +    F QPI FG NN++G  +  ++              A+P+    W+LSF +GG GTFL  F
Sbjct:   22 EWIAAERKGVEVSVSGLAGSEWRQKGSVFLSNFRMVFVSERPDT-KTGL--HAVELPLVYLMHVSFNQPI-FGCNNMTGECKILLSNGDE----------ASPM---RWKLSFMTGGAGTFLSLF 129
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11382.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FLT1_ECTSI1.290e-10671.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A455AZA5_PHYMC4.240e-1037.01WW domain-binding protein 2-like n=1 Tax=Physeter ... [more]
S8EWD4_TOXGM4.690e-832.45Arabinogalactan protein, putative n=15 Tax=Toxopla... [more]
A0A2D4C0E1_PYTIN7.000e-830.65Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1R2CDA6_9CILI9.020e-830.66Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A2A9MK49_9APIC2.830e-730.21Putative arabinogalactan protein n=1 Tax=Besnoitia... [more]
A0A2C6KJC8_9APIC7.260e-734.92Arabinogalactan protein n=1 Tax=Cystoisospora suis... [more]
F0VBG2_NEOCL3.680e-530.69Arabinogalactan protein, putative n=1 Tax=Neospora... [more]
A0A059LIW5_9CHLO4.310e-532.00Uncharacterized protein n=1 Tax=Helicosporidium sp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11382contigH-paniculata_contig11382:859..7260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue2.7e-11
Seed eggNOG ortholog112098.XP_008617740.1
Preferred nameWBP2
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000785,GO:0000790,GO:0000976,GO:0000977,GO:0000978,GO:0000979,GO:0000987,GO:0001012,GO:0001046,GO:0001047,GO:0001067,GO:0001775,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006996,GO:0006997,GO:0007154,GO:0007165,GO:0007338,GO:0007343,GO:0008104,GO:0008134,GO:0008150,GO:0009566,GO:0009719,GO:0009725,GO:0009755,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0014070,GO:0016043,GO:0019219,GO:0019222,GO:0019904,GO:0019953,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0030331,GO:0030518,GO:0030522,GO:0031056,GO:0031058,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031490,GO:0031514,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032570,GO:0032870,GO:0033011,GO:0033036,GO:0033043,GO:0033044,GO:0033143,GO:0033145,GO:0033146,GO:0033148,GO:0033993,GO:0035038,GO:0035039,GO:0035065,GO:0035066,GO:0035257,GO:0035258,GO:0036126,GO:0040008,GO:0040029,GO:0042221,GO:0042493,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043401,GO:0043565,GO:0043627,GO:0044085,GO:0044212,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044703,GO:0045184,GO:0045570,GO:0045572,GO:0045815,GO:0045893,GO:0045927,GO:0045935,GO:0045944,GO:0046620,GO:0046622,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048584,GO:0048638,GO:0048639,GO:0050699,GO:0050789,GO:0050793,GO:0050794,GO:0050847,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0061827,GO:0065007,GO:0070013,GO:0070887,GO:0070925,GO:0071310,GO:0071383,GO:0071391,GO:0071396,GO:0071407,GO:0071440,GO:0071442,GO:0071495,GO:0071840,GO:0080090,GO:0097159,GO:0097223,GO:0097729,GO:0120025,GO:0140110,GO:1901363,GO:1901654,GO:1901700,GO:1901983,GO:1901985,GO:1902275,GO:1902680,GO:1903506,GO:1903508,GO:1905269,GO:1990837,GO:2000026,GO:2000112,GO:2000756,GO:2000758,GO:2001141,GO:2001252
EggNOG free text desc.female pronucleus assembly
EggNOG OGsKOG3294@1,KOG3294@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001370.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size1128
Cds size675
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11382.884.1prot_H-paniculata_contig11382.884.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11382 915..6863 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.8926125-UTR-H-paniculata_contig11382:858..9141622928844.8926125-UTR-H-paniculata_contig11382:858..914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11382 859..914 +
1691480642.158303-UTR-H-paniculata_contig11382:858..9141691480642.158303-UTR-H-paniculata_contig11382:858..914Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11382 859..914 +
1622928844.9990075-UTR-H-paniculata_contig11382:6863..72601622928844.9990075-UTR-H-paniculata_contig11382:6863..7260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11382 6864..7260 +
1691480642.2424498-UTR-H-paniculata_contig11382:6863..72601691480642.2424498-UTR-H-paniculata_contig11382:6863..7260Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig11382 6864..7260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.9050639-CDS-H-paniculata_contig11382:914..10521622928844.9050639-CDS-H-paniculata_contig11382:914..1052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 915..1052 +
1691480642.1737456-CDS-H-paniculata_contig11382:914..10521691480642.1737456-CDS-H-paniculata_contig11382:914..1052Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 915..1052 +
1622928844.9222054-CDS-H-paniculata_contig11382:2644..27471622928844.9222054-CDS-H-paniculata_contig11382:2644..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 2645..2747 +
1691480642.1867182-CDS-H-paniculata_contig11382:2644..27471691480642.1867182-CDS-H-paniculata_contig11382:2644..2747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 2645..2747 +
1622928844.9390848-CDS-H-paniculata_contig11382:3456..35791622928844.9390848-CDS-H-paniculata_contig11382:3456..3579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 3457..3579 +
1691480642.1969345-CDS-H-paniculata_contig11382:3456..35791691480642.1969345-CDS-H-paniculata_contig11382:3456..3579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 3457..3579 +
1622928844.9513834-CDS-H-paniculata_contig11382:5123..51991622928844.9513834-CDS-H-paniculata_contig11382:5123..5199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 5124..5199 +
1691480642.206032-CDS-H-paniculata_contig11382:5123..51991691480642.206032-CDS-H-paniculata_contig11382:5123..5199Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 5124..5199 +
1622928844.9677896-CDS-H-paniculata_contig11382:5644..57681622928844.9677896-CDS-H-paniculata_contig11382:5644..5768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 5645..5768 +
1691480642.2200935-CDS-H-paniculata_contig11382:5644..57681691480642.2200935-CDS-H-paniculata_contig11382:5644..5768Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 5645..5768 +
1622928844.981335-CDS-H-paniculata_contig11382:6752..68631622928844.981335-CDS-H-paniculata_contig11382:6752..6863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 6753..6863 +
1691480642.2331347-CDS-H-paniculata_contig11382:6752..68631691480642.2331347-CDS-H-paniculata_contig11382:6752..6863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11382 6753..6863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11382.884.1

>prot_H-paniculata_contig11382.884.1 ID=prot_H-paniculata_contig11382.884.1|Name=mRNA_H-paniculata_contig11382.884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=225bp
MACLNPPIADTLPHLTLPRHAVVLGLSGVANGREVLMARRVGMHLDVSVP
TVGRFRSMGDVFLTSDRLVFCASQPHKMQNGMMFKGFDIPLHMISGEKFE
QPILFGANNLSGLVETNIAYAGHITETSTYHATATPVINSTWRLSFRSGG
FGTFLRAFYVALGRRRLVNPAVSAVAFGGSDEEWASLQATQVIQAVAVDP
TDDTVLLSAAPVRATAPPVSLGTF*
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mRNA from alignment at H-paniculata_contig11382:859..7260+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11382.884.1 ID=mRNA_H-paniculata_contig11382.884.1|Name=mRNA_H-paniculata_contig11382.884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6402bp|location=Sequence derived from alignment at H-paniculata_contig11382:859..7260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTTAGTTGGAGGCGCTAGGGTTGTAATCAGTACTCCATACAATCACG
CGAGAAATGGCGTGTTTGAACCCACCGATAGCTGACACTCTGCCTCATCT
CACGCTCCCGAGGCATGCGGTGGTGTTGGGCTTATCTGGAGTTGCGAATG
GAAGAGAAGTACTGATGGCTAGAAGAGTTGGGATGCATCTGGATGTGAGC
TAAATCGCCGACTGTCGTTACCCTTTCTGGTTCGAAGTGTGTTGTAGTGC
AGTTTACCTCTTGAGCCTTTCAATGCGTACATCTTGCATAGCTGACAGAC
AAACTCGACTACGGTGAAATACCTCTTGGTGGATCATTCCAGAAGGCCGT
GCTGCACCAGAGCTGCCTTGCCTTACCAGGCCTGGATATTCACGCGAGCC
TTGTGATTTCCATGTGTAAATAGGGCTGACTTGTTACTCTTTTGTTCTAG
ATTCAACTGCACAGTCACATTGTTCCATAGTTGAAGCGCATTGTTGCCTC
TATTTGCTCAGGTAGGCCAAAGTCACAAATTGCTGCACTTGTGGCTGCAG
TGTCCAGAGTAGGTATCTCGTGCGAAAGGGTGTTGCGCTCCGTTGTGGAT
TGGCGCTGGCTACTGGTCAGATGTCAATGATCCAATCTTCCTTTTAGTTT
CAACCGTAGGGCGGCAGAGGGTATTTCGGAATAATAAATGATTTGACATT
ACATGTCGCGCGGGTCTCGCTGAATATTGTGCGCGGAACGATGCCAAATT
ATCTCTCTGCGCCAAATATGCCAAAGTTAGTAGTCAGTACGAATACATAC
CAAGTAGACTGGGCCAACTCTATGAACAGCGGCGCCCCCCTATCCCCGTA
ATCGTTCCATAGGTGTTCTCGTTTCACGTCTTTCAAGTCGGGAATACCTG
CTGGGGTTTCTGCAAATAGAAAACAAGCTTGAAAGAATATCGGCAGCGCT
CACAACTCCTTCTCTCGAGTAGTCATCTGACCTAAATCATTGTTAGTACA
GTGCTGTGTATACCTTAAGAAATATTTTTTGTCATCCGCAGACGCCACGA
GATACCTCTCATTCCACCTGTAATTGTATCTACAACTTGCAAAAGTTGCG
CGTGGGCCCATCCATCCACCGGACATTAAGCCACGGATCTGCAGAACTGA
CTCAAACGGACAACATGCAACATCAGCTGGCTAGGGCGGAGCTCGCAGTG
CCATGATAGACGGCAAAATAGAGCGTAGCGCTTGGAGGTCAACTTCCTAA
CTGTTTCGTGACGAATGACCTCCCGAATTGAGAAACAACTTTTTACCAAC
ATTCAAGCATTCGGCTTGCCGGCGGGCATGAGTTTGAACGCACGGACACG
AATCATTTCGCCCGCATTCACGCTAGAGTTGCGTTCGTGGAGTTGTGTTG
CAGGAGCGGGGGACTGGTATACAGCAAGAGTCTGACGTAGCTATGAAGGG
TGGCCGCCAAGTGTGAATCTCAAAATTGAACAATCATATCTCAGATATAT
TCAGATTGTGTCATGGCTTCCAGCATTTAGCCAGATGGCAACGCCAACCC
CGAGAGCGTGGAGAACCTTCATCGAACCAAACTCCACCAGGTCGTCGCTA
ATACTGCAGAAAGATACCCGCCGTGTTAGCGAAGCCCCAAAATCATCTAC
TTCTGCTACGCATTGTACGGAAACGTGTGCCGTGGTTTTTGCTCCGCAAC
CGGGCACGCCCTGGCCTCACTGAACTGCAGTAATTTTACTCAGAGTCCAG
TTCACCTTCATTTTCGATACGCCTTTCAACAAGCAGGTCAGTGTGCCCAC
GGTAGGGCGGTTCCGCAGCATGGGCGATGTATTTTTGACATCGGATCGGC
TGGTGTTCTGTGCAAGCCAGCCTCACAAGATGCAAAATGGTGAGCTCCCG
CGGTCGTGCCCTGCAGTCAGCTGCCACAGCAAACTCAGGCGTAGCACGTC
GGGCTACCTCAGCGAGCTCCGCTATCGTTTGTAGTCTACGCACTCATTTG
GGCTATCCTTTCTATCTCGCTTTGGTGCGAATCTATCCATCCCTTGTCCC
ACTTGTACGGCAATGACTAGGTGAACGGGATGTGTTGAATAATCAACAAC
ACTACCGTCAATTATTGTCGCAAATTCAACCCCCCCCCCACACACACACA
CGAATACGAGTACTGGAGCATTCGCGACGAAAATTGAAAACGATTCGCCT
GAAGATGCAGCATGAGCACATTCATCTTTGTTTCGTATGACTACTCCGAG
TGATGGCAATGCGAATAAACAAACAGGGATTAAGAATATTTTCTATGTGA
CCGCACATTCTGAACCTTCAGGCGAGTACGTGTTCGTTTTCGCTGTGAAT
GCCCATAGTGTTCATTCGTCTTCGTCTTCGTCCAGGGCGTGCAATCCATA
CGAGCTAGGCGTTAGTTATATTTTGCGTCAATCATACCGTACACTTATGT
ACGATCATACATATCGCTCGGCCCAAGAGATGCGAAGCACTGCCAATTCT
CCGCTTTTCGCCATTCGAAACGTCGAGAGCCTACGCCAACACTTGATGGC
TGTGTCCACAAAGGAAGCCACGAGCTTGCACCCTTCCTATCCGCACAGGA
ATGATGTTCAAGGGCTTCGATATCCCACTACACATGATAAGTGGAGAGAA
GTTCGAGCAGCCTATTCTATTTGGCGCCAATAATCTATCTGGGCTCGTGG
AGACCAACATCGCTTATGCAGGTGCGCAAATCTGGAGCAAAGCGGCCAAC
ACCCCGAGGTCAATATGTCGCTTTGCCGGCCGGTGCCGGAGTTCAAGCGT
AGATAGACTGCTGTGTGGTTATATTCTCTGGATCGTATTGCATGTGGCGT
TAATTTCCAATTTACCTGTGCCTAATAGCAGTCTGGTGTCTCTGTACCGC
TCTAGTGTGGCGGGGTGGCATTGCCTTCGGAGTGAACCGTGGAGACTTGG
TAAGACGCTGATTCACGACTTGCGGGATACCAACAAATGGATGGTGGATT
TCATGTCCTTTACTGCAATCGTTGTGTGAAAGTAGCCCCCAACTGTACAC
CTGTGAGGCGGAAGGTAGTCGATTCAACAGGATCATGCTTCAGACAAGGG
GTTCGAATTTATGCCAAAAAACTGCAAATGAGAGTTGAGATTCAGCGCTT
GCCGTCGAACATGTTTTTAAGGTCCCCAGCGATCATCGCGGGGTGGGGGT
GGCCGCTGATTCGGTGCGGAGACCGATGATGCCCGGCTGATGTCGGCGCG
AGGATGGCAACAGTCCAAAGGGTTCATCCATGTCCAGTATAATTGTCAAA
AGGGAAATTGTCCGTCTCTCGGTTGGAACAGCCATCTCGTCCGTTTTCAA
CTGCAGTCAATATGGACACCAGACCGGGGCTGCACCCGCAGAAGCTGAGG
CTGCAGGGCAAAGGATACAATTATATAAATGTGAACCGCTGGTAAATGTG
TAATTTGTGTGAAAAAGAGAGGATGTTTATATCCAAGTATACATTACAAA
CGCGTGGCAGTACAGATTGGCGTTTGTCTCGGATATGGCGGGAGCCTCTA
GGGTGCCACGTGAAGTTGAAATAACCCTAAATGGTGGTTTATGCTCCCCC
ACAAACTTCCTCCGGCGGGGTGTTCCGATGGCTCGCGCCGATTCGGTTGG
GGGTCTAATTTGCACCCATACTGCACGCGGGTGCGCCATGGGACATATTA
TTGCGGACATAGTGTGACGCTCTTATAGGAATGTCGAAACTCCAGTTGCC
GGGTGGATTTACATCTACCAATTACCCCGTGACTCCAAATGAGAACACGA
TCCTCCCAGGAGACTGGCTCTCGAGGGGACATCGCCCGCTCTGCAGATTG
GTTCCAAGTTTTAGGGTGTAGTGCGGAGCACGCACTTGGGTTTTGTTCTT
CTTGATGAATGAACTAACTTGTTCTCCAGAGGTTAAAAGGCACCTGGCAA
AGCTATTCGGACAATCAAACGAATGTGACTGGTTGTTGTGTAGGGGGCTG
GGGTTCAGGAACCCCGGGAACGTGCTCTCTGTGAGTTTAAACACAAGAAT
GAACCTTTACAAAACAGATAGTGAACACAGGCTAGGCTGTAGATTGTAGC
TGAGCCAACAAGGAGGCAACGCAGCGGGTCCCTCGTGATGGTTCGATTTA
AACAAGATACCACATTGTATGGACTCTAGCCTGTTGTACCAGCGTCAGCC
GGCACGTATTTTCCCCAACATTAGCCGCCGGTTGTATCATGCGCATGGGT
CGTGTGTCTTCACAGGGCACATTACTGAAACATCGACCTATCATGCAACG
GCGACACCTGTCATCAACTCCACCTGGCGATTATCGTTTAGGTGAGTGAT
CGAGGACCCGAACTTAACCTAACTGGTGGTAGTGCGATGACCTCGACCTC
TCCGAACTGGGCCACTTCCGTTGCTGTGTGTTTGAGTTTGGAATCATAAC
GCACAGGGATCAGTCGTTGGAAGGGATCGACCGAAGAACGAGTGTTCATG
ATTTTTACCTGTCTTGCGGTCAGTAGTCAGTGGTTTGCGCAACGGAAACC
CCTCACAGAATGTACACGCGGGAAATAGAGACCGAGCACGACCATGAAGC
AGAGAGCCATTCTCGCCACGCTTGTACTGTAGACGGATTCATGATGTCCA
GTATAGGCATCAATTGTTGGTGTAGCTTGTGCAGGGAGATGCTGTAGTAC
TTTATACTTTGTACCGGTGACATGTATGTTGGGTTCGAGTGATGGCTTGC
TACATTCATGGTTTCGTCCACGCCCCGTCGTGACAGGAGTGGAGGGTTCG
GAACGTTTTTAAGGGCGTTTTACGTGGCTCTAGGGCGGCGGCGATTGGTC
AATCCGGCCGTTTCGGCCGTCGCTTTCGGAGGGTCTGACGAGGAATGGGC
TTCATTGCAGGTCAGAAAATAGAAGTAAGACATGTTCGATCGCTGTGTAT
ATTTTTGTTCATGCCCTCGTGATGAGTATTTTCGCTCGTGCTGCAGTAAA
CCGCGTCTACAGTATGCTGTTGGTGCTTTAATATCCGTAGCCACGTCTTT
GGCTATTTCATGCGCACCTTACAGCTCAATATTTTCCAGCACGATGCATT
ACATGGCGTGTTCTGTTTCACCTGTTTTGGACATTTGCCATGTTTTCCTT
TTCCTTATATTTTCATTAAATCTTGATCGGTGGGATCTTCCGCTCCACTC
AACCTCGCAGCTCCGTCTACCCCTTAGCTCAACCATTTATACTATTAACA
ATTTTGTAGCGATATTGAGAGTAGGGAGTGTTTGTCGATTTTGAGAGCAA
AGATCTGGCCGTCAGATGTGTTTTTTTGTCCGTTTGCACTTGCTTGTAAA
TATTTTGTCCTCCTCAAAGAAGCAAAAAGATTGAATCCATCAGTTCCGGG
GATATCGTTGAAAATCACTATTCACTGTACAGTGGCCTCGATTGAAAGAT
TTTCGTCCGTTAATCAAACCTCGAATTTTTAATTTGTTCGTTTCGGACGC
TGGATACATCGCATTGACCGCCAGCTCGGCGCGTCATTTTTTGCCAAGGG
TGCGCAGGTCGAATCGTCGATCTTTGCTCTCAAAATCGACGATACCTTCC
ACTCTCAATCTCACAATTGATTCTCAATCTCGCCAAACATGGTTTATTCT
GTTAAGCCCGTTCCGTGAATCTTTTGGCATGATGTCTGCTTCGAGGTGCC
TAGTGCCTTCAGCTATATCGTACTCATTTACGTAACGCCGTCTGTTGAAC
AATATAGAGGATGGTATATAGTACTCAACCTTTATTTTTTAATGATAAGG
AATTATATTTGGCGCCCAAATCGATAGTGACCTCCCGTCCAATCGAATAA
TGACCTTTCCTGTCCGTCGTTTGTGCTTCTTGGACTTTGAGCAGGCTACA
CAAGTTATCCAAGCGGTGGCGGTTGATCCAACCGATGATACTGTGCTGCT
TTCTGCGGCTCCTGTGCGGGCGACGGCTCCGCCAGTATCTTTAGGCACGT
TTTGATCGTCACGTTATCTGAGTGGAATACACACTCAAGCGTAGTTGTCA
TGCAATGCTGTGTTCGTGTGTATTTACTGTAAAATAGATTAAAAAGAAGA
GAGGATGAAGTACTGCGTCCTACAGGAGTTTCCTTCTTATACTATAGTAT
ACATATATATATATATATATTTGTATTGAATGCTTAACAGCAGTGTAGAA
GCGCTGCCCTCTGTCAGGCTTTGATTGTGTGGGCTCAAGTGGATGCTGAT
ATCGAGAGCGGTAGTGTTTACTCGGAATTGGGTTCACGGCGTGTGTTATA
TTTCACCAAAAGAAATGCGTTGACCGTGAATTTTGGGCCATCCAAATCGC
TTTCTTCACCAGCGTTCATCAATAAAAAGACTACCGGCGCGTTTTTCCTT
TC
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Coding sequence (CDS) from alignment at H-paniculata_contig11382:859..7260+

>mRNA_H-paniculata_contig11382.884.1 ID=mRNA_H-paniculata_contig11382.884.1|Name=mRNA_H-paniculata_contig11382.884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1350bp|location=Sequence derived from alignment at H-paniculata_contig11382:859..7260+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGTGTTTGAACCCACCGATAGCTGACACTCTGCCTCATCTCACGCT
CCCGAGGCATGCGGTGGTGTTGGGCTTATCTGGAGTTGCGAATGGAAGAG
AAGTACTGATGGCTAGAAGAGTTGGGATGCATCTGGATATGGCGTGTTTG
AACCCACCGATAGCTGACACTCTGCCTCATCTCACGCTCCCGAGGCATGC
GGTGGTGTTGGGCTTATCTGGAGTTGCGAATGGAAGAGAAGTACTGATGG
CTAGAAGAGTTGGGATGCATCTGGATGTCAGTGTGCCCACGGTAGGGCGG
TTCCGCAGCATGGGCGATGTATTTTTGACATCGGATCGGCTGGTGTTCTG
TGCAAGCCAGCCTCACAAGATGCAAAATGGTCAGTGTGCCCACGGTAGGG
CGGTTCCGCAGCATGGGCGATGTATTTTTGACATCGGATCGGCTGGTGTT
CTGTGCAAGCCAGCCTCACAAGATGCAAAATGGAATGATGTTCAAGGGCT
TCGATATCCCACTACACATGATAAGTGGAGAGAAGTTCGAGCAGCCTATT
CTATTTGGCGCCAATAATCTATCTGGGCTCGTGGAGACCAACATCGCTTA
TGCAGGAATGATGTTCAAGGGCTTCGATATCCCACTACACATGATAAGTG
GAGAGAAGTTCGAGCAGCCTATTCTATTTGGCGCCAATAATCTATCTGGG
CTCGTGGAGACCAACATCGCTTATGCAGGGCACATTACTGAAACATCGAC
CTATCATGCAACGGCGACACCTGTCATCAACTCCACCTGGCGATTATCGT
TTAGGGCACATTACTGAAACATCGACCTATCATGCAACGGCGACACCTGT
CATCAACTCCACCTGGCGATTATCGTTTAGGAGTGGAGGGTTCGGAACGT
TTTTAAGGGCGTTTTACGTGGCTCTAGGGCGGCGGCGATTGGTCAATCCG
GCCGTTTCGGCCGTCGCTTTCGGAGGGTCTGACGAGGAATGGGCTTCATT
GCAGGAGTGGAGGGTTCGGAACGTTTTTAAGGGCGTTTTACGTGGCTCTA
GGGCGGCGGCGATTGGTCAATCCGGCCGTTTCGGCCGTCGCTTTCGGAGG
GTCTGACGAGGAATGGGCTTCATTGCAGGCTACACAAGTTATCCAAGCGG
TGGCGGTTGATCCAACCGATGATACTGTGCTGCTTTCTGCGGCTCCTGTG
CGGGCGACGGCTCCGCCAGTATCTTTAGGCACGTTTTGAGCTACACAAGT
TATCCAAGCGGTGGCGGTTGATCCAACCGATGATACTGTGCTGCTTTCTG
CGGCTCCTGTGCGGGCGACGGCTCCGCCAGTATCTTTAGGCACGTTTTGA
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