prot_H-paniculata_contig32903.8826.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig32903.8826.1
Unique Nameprot_H-paniculata_contig32903.8826.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length66
Homology
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A5A7TVE6_CUCME (Integrase catalytic domain-containing protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TVE6_CUCME)

HSP 1 Score: 62.4 bits (150), Expect = 9.160e-10
Identity = 32/65 (49.23%), Postives = 41/65 (63.08%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEFD 65
            M++ SLGG  YV+++VD YSRF  V+F+K KSDA     S        KG KI  IR+D+G EFD
Sbjct:  103 MQIESLGGKKYVLVVVDDYSRFTWVRFLKGKSDAVKICISLCLNLQREKGKKIIRIRSDHGKEFD 167          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2HJ77_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJ77_9BRAS)

HSP 1 Score: 61.2 bits (147), Expect = 9.680e-10
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:    1 MQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 63          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2HW89_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HW89_9BRAS)

HSP 1 Score: 61.2 bits (147), Expect = 1.640e-9
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:  160 MQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 222          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A1J3ITQ9_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3ITQ9_NOCCA)

HSP 1 Score: 61.6 bits (148), Expect = 1.720e-9
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:  550 MQVESIGGKRYVYVLVDDYSRYTWVRFIRDKSDTVASFKIWALQVITEKG-SLKCIRSDHGGEF 612          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2L0H6_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2L0H6_9BRAS)

HSP 1 Score: 61.2 bits (147), Expect = 2.310e-9
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:    1 MQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 63          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2JR80_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JR80_9BRAS)

HSP 1 Score: 61.2 bits (147), Expect = 2.320e-9
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:    1 MQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 63          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2HXF7_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HXF7_9BRAS)

HSP 1 Score: 61.2 bits (147), Expect = 2.320e-9
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+GG  YV ++VD YSR+  V+FI+ KSD  A+ + +  + IT KG  +  IR+D+GGEF
Sbjct:    1 MQVESIGGKRYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVITEKG-SLKRIRSDHGGEF 63          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A6D2JBX4_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX4_9BRAS)

HSP 1 Score: 57.8 bits (138), Expect = 4.510e-9
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 0
Query:    1 MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            M+V S+ G  YV ++VD YSR+  V+FI+ KSD  A+ + +  + I  KG  I  IR+D+GGEF
Sbjct:    7 MQVESIAGKHYVFVLVDDYSRYTWVRFIRDKSDTMASFKIWALQVINEKG-SIKRIRSDHGGEF 69          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: UPI001D037E96 (uncharacterized protein n=1 Tax=Morchella sextelata TaxID=1174677 RepID=UPI001D037E96)

HSP 1 Score: 59.7 bits (143), Expect = 8.100e-9
Identity = 30/60 (50.00%), Postives = 38/60 (63.33%), Query Frame = 0
Query:    5 SLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            SLGG SY +I +D YSR+  + F+KKKSDA AA Q YIA         +   R+DNGGE+
Sbjct:  527 SLGGFSYYIIFIDDYSRYAHLYFLKKKSDAAAATQRYIAYMENQLDKTVKRFRSDNGGEY 586          
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 59.3 bits (142), Expect = 1.120e-8
Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 0
Query:    3 VTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKGLKIGAIRTDNGGEF 64
            V SLGGS Y++ +VD +SR  TV+F+K K +A   L  YI +     G K+  +RTDNG EF
Sbjct:  499 VCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEF 560          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32903.8826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A7TVE6_CUCME9.160e-1049.23Integrase catalytic domain-containing protein n=2 ... [more]
A0A6D2HJ77_9BRAS9.680e-1046.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HW89_9BRAS1.640e-946.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A1J3ITQ9_NOCCA1.720e-946.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2L0H6_9BRAS2.310e-946.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2JR80_9BRAS2.320e-946.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2HXF7_9BRAS2.320e-946.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2JBX4_9BRAS4.510e-945.31Integrase catalytic domain-containing protein n=1 ... [more]
UPI001D037E968.100e-950.00uncharacterized protein n=1 Tax=Morchella sextelat... [more]
A0A293MM55_ORNER1.120e-846.77Reverse transcriptase, gag, polyprotein (Fragment)... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 2..66
e-value: 1.2E-7
score: 33.4
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 1..66
score: 8.617
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 5..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32903contigH-paniculata_contig32903:101..298 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32903.8826.1mRNA_H-paniculata_contig32903.8826.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig32903 101..322 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig32903.8826.1 ID=prot_H-paniculata_contig32903.8826.1|Name=mRNA_H-paniculata_contig32903.8826.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
MRVTSLGGSSYVMIIVDHYSRFQTVKFIKKKSDATAALQSYIAEYITPKG
LKIGAIRTDNGGEFDG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf