prot_H-paniculata_contig32894.8820.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig32894.8820.1
Unique Nameprot_H-paniculata_contig32894.8820.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length75
Homology
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: D8LNE0_ECTSI (eIF-2B GDP-GTP exchange factor subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.700e-25
Identity = 52/74 (70.27%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    1 MDKEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTLEKENADNRHETFDI 74
            MD+ +++++DDF R LSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELK+AIQLMED +E ++ DN   T  +
Sbjct:    1 MDEGRKVISDDFARQLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKEAIQLMEDKMETDSPDNSRSTISL 74          
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A835YUA3_9STRA (eIF-2B GDP-GTP exchange factor subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUA3_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.500e-9
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 0
Query:    3 KEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDAIQLMEDTL 60
            K++Q V  +F ++L PET LPVAAIK LIGVI RS  +TI GME EL+    L+ D++
Sbjct:   13 KQEQAVVQEFLQMLGPETTLPVAAIKVLIGVIARSNASTIMGMERELRQTADLLLDSV 70          
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Match: A0A7S3XKU3_HETAK (eIF-2B GDP-GTP exchange factor subunit alpha (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XKU3_HETAK)

HSP 1 Score: 49.7 bits (117), Expect = 3.700e-5
Identity = 24/49 (48.98%), Postives = 35/49 (71.43%), Query Frame = 0
Query:    4 EQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELKDA 52
            E   V D+F   LSPE A+PVAAIK ++ V++RST TT+  ++ EL++A
Sbjct:   16 EHPSVVDEFISYLSPEMAIPVAAIKAMLSVMQRSTATTMMELQTELREA 64          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32894.8820.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LNE0_ECTSI2.700e-2570.27eIF-2B GDP-GTP exchange factor subunit alpha n=2 T... [more]
A0A835YUA3_9STRA1.500e-953.45eIF-2B GDP-GTP exchange factor subunit alpha n=1 T... [more]
A0A7S3XKU3_HETAK3.700e-548.98eIF-2B GDP-GTP exchange factor subunit alpha (Frag... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..66
IPR042528Translation initiation factor eIF-2B subunit alpha, N-terminalGENE3D1.20.120.1070coord: 3..68
e-value: 4.3E-9
score: 38.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32894contigH-paniculata_contig32894:1709..1933 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32894.8820.1mRNA_H-paniculata_contig32894.8820.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig32894 162..1933 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig32894.8820.1 ID=prot_H-paniculata_contig32894.8820.1|Name=mRNA_H-paniculata_contig32894.8820.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MDKEQQIVADDFRRLLSPETALPVAAIKTLIGVIRRSTNTTIRGMEAELK
DAIQLMEDTLEKENADNRHETFDI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR042528elF-2B_alpha_N