mRNA_H-paniculata_contig32835.8807.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32835.8807.1
Unique NamemRNA_H-paniculata_contig32835.8807.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32835.8807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32835contigH-paniculata_contig32835:1499..2237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930012.4820654-CDS-H-paniculata_contig32835:1498..16861622930012.4820654-CDS-H-paniculata_contig32835:1498..1686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32835 1499..1686 -
1691481109.9951074-CDS-H-paniculata_contig32835:1498..16861691481109.9951074-CDS-H-paniculata_contig32835:1498..1686Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32835 1499..1686 -
1622930012.4932585-CDS-H-paniculata_contig32835:2029..22371622930012.4932585-CDS-H-paniculata_contig32835:2029..2237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32835 2030..2237 -
1691481110.0076892-CDS-H-paniculata_contig32835:2029..22371691481110.0076892-CDS-H-paniculata_contig32835:2029..2237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32835 2030..2237 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32835.8807.1prot_H-paniculata_contig32835.8807.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32835 1499..2237 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32835.8807.1

>prot_H-paniculata_contig32835.8807.1 ID=prot_H-paniculata_contig32835.8807.1|Name=mRNA_H-paniculata_contig32835.8807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
MTDGSLSTKCAAKLVVVSIAGDKTLLNPSTSTDARLNKLFQSVKDSLHPR
GTVTIMVPHPWHLHAGRIHSAVTHALVGLHVEDHPLLLQYKGMRAGRTSQ
NVVNHLRYNADTVMLARNDPGDGAGFTCNKRV
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mRNA from alignment at H-paniculata_contig32835:1499..2237-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32835.8807.1 ID=mRNA_H-paniculata_contig32835.8807.1|Name=mRNA_H-paniculata_contig32835.8807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=739bp|location=Sequence derived from alignment at H-paniculata_contig32835:1499..2237- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATGGGAGTCTATCCACTAAGTGTGCGGCCAAATTGGTGGTTGT
CTCCATTGCAGGAGACAAGACCCTCCTCAACCCTTCCACATCAACCGACG
CCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAGCCTGCACCCCCGT
GGGACTGTTACAATCATGGTACCTCACCCTTGGCATCTGCACGCTGGACG
CATCCACAGTGAGTAGTTTGTCTTTGCTGTTTGTGCAACTTTATAAAAAA
TACGCCATTGCTGTAACATGGAAGCTCATCGACCGCTTCAGCCCACTATA
CCCAATGGTTTATGGAAGGAGAAAGTAGCGTGTACACGGCATAATAGAGT
GTGCAACATGATTGCATCAAGGTGTAATGTGAACGTGCGATTGGGGTATC
ACTGGACGTCTGTTCTACGTTTTTTCACTTGTTGCACGATAAACTCCGCC
TGTTGAGGCATATGAACGATCACGGAGGTATTAGAGCACACACATATCGG
GTATATTCCAAGCATCAACGCATTCCGTCGATTTTCTTACTGTGTTTGCA
GGTGCTGTGACCCATGCATTGGTAGGATTGCACGTTGAGGATCACCCACT
TCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACATCGCAGAATGTTG
TCAATCATCTACGTTACAATGCAGACACGGTGATGTTGGCACGCAACGAC
CCGGGTGACGGGGCAGGCTTCACGTGCAACAAGCGTGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig32835:1499..2237-

>mRNA_H-paniculata_contig32835.8807.1 ID=mRNA_H-paniculata_contig32835.8807.1|Name=mRNA_H-paniculata_contig32835.8807.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig32835:1499..2237- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACAGATGGGAGTCTATCCACTAAGTGTGCGGCCAAATTGGTGGTTGT
CTCCATTGCAGGAGACAAGACCCTCCTCAACCCTTCCACATCAACCGACG
CCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAGCCTGCACCCCCGT
GGGACTGTTACAATCATGGTACCTCACCCTTGGCATCTGCACGCTGGACG
CATCCACAATGACAGATGGGAGTCTATCCACTAAGTGTGCGGCCAAATTG
GTGGTTGTCTCCATTGCAGGAGACAAGACCCTCCTCAACCCTTCCACATC
AACCGACGCCCGACTGAACAAGCTATTCCAATCCGTGAAAGACAGCCTGC
ACCCCCGTGGGACTGTTACAATCATGGTACCTCACCCTTGGCATCTGCAC
GCTGGACGCATCCACAGTGCTGTGACCCATGCATTGGTAGGATTGCACGT
TGAGGATCACCCACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCA
CATCGCAGAATGTTGTCAATCATCTACGTTACAATGCAGACACGGTGATG
TTGGCACGCAACGACCCGGGTGACGGGGCAGGCTTCACGTGCAACAAGCG
TGTAGTGCTGTGACCCATGCATTGGTAGGATTGCACGTTGAGGATCACCC
ACTTCTCCTCCAGTACAAGGGTATGAGGGCCGGGCGCACATCGCAGAATG
TTGTCAATCATCTACGTTACAATGCAGACACGGTGATGTTGGCACGCAAC
GACCCGGGTGACGGGGCAGGCTTCACGTGCAACAAGCGTGTA
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