mRNA_H-paniculata_contig328.8799.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig328.8799.1
Unique NamemRNA_H-paniculata_contig328.8799.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: A0A7S2UVT2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVT2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.160e-15
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:   67 IGVFLVFLFSILSVVVCLVGATTPRPGAFACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPIQAIPIYDQRTEVRR 402
            +GVF++  F IL  ++CL G++T  P  F      +  FV+ IL +AERE R+ E + +++ EY Q FYPR+V+  I++ + ++ L G+   HI   IQA  I D     +R
Sbjct:    1 VGVFVIGFFGILCFILCLFGSSTRIPWLFYIISGFIFLFVIFILFVAEREPRF-EIQEEKLEEYSQLFYPRVVIGVILVLSFIISLVGLLALHIAPEIQAEVIGDIEATTKR 111
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: A0A2J8A4F0_9CHLO (Transmembrane protein 218 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A4F0_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 3.940e-11
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 1 
Query:   28 LTEKGE----TRILGLGIGVFLVFLFSILSVVVCLVGATTPRPGAFACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPIQAIPI 375
            LT  G     TR++G+G+GVFLVF F  LS+VVCLVG+ T    A       + G + L+L+ + +  + V+        YD T  P +++  ++    L+G  G+ V H+   + A P+
Sbjct:   32 LTHHGRALLATRVVGVGLGVFLVFFFLALSLVVCLVGSRTKYRWAIYMASTAMFGIIALVLIASPKGEKPVKPPEG----YDLTIIPVVIITAVVCIGVLLGAVGMLVFHVLPTVYARPL 147
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: A0A7R9YCK5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCK5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.010e-8
Identity = 37/108 (34.26%), Postives = 56/108 (51.85%), Query Frame = 1 
Query:   37 KGETRILGLGIGVFLVFLFSILSVVVCLVGATTPRPGAFACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPI 360
            K   +ILG+GIG FLV  F  +++++   G    +P      GA L   V  +LV+A RESR+VE + +   EY      R  +  +M  + L  + GVC+ H  KP+
Sbjct:   29 KDPNQILGVGIGTFLVITFFGVAMLIFGTGLAGGKPFTGLLTGAVLFTLVTTLLVVAPRESRFVETEEENA-EYSNLPLARGFLLILMALSCLAAVGGVCIHHAAKPL 135
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: A0A6T5NUG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NUG8_HETAK)

HSP 1 Score: 59.7 bits (143), Expect = 1.120e-8
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 1 
Query:   28 LTEKGETRILGLGIGVFLVFLFSILSVVVCLVGATTPRPGAFACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPIQAIPIYDQRTEVRR 402
            + E   TR+LG+GIGVFL+  F  L++++ +VGA   + G F   G G+   V  IL  A+R S+YV    + + +Y   FYPR VVF  ++ A  +  A   V  + + +    + D  T  +R
Sbjct:   10 VVEAEPTRVLGVGIGVFLIAFFFALALLLSVVGAALGKKGIFFGIGTGIFLLVCAILFGADRGSQYVI-VEETVQDYSALFYPR-VVFAAILGAGALMAAAPAVQMLTEQVHTEVMDDLETRRKR 132
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: A0A8J2SSJ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSJ6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.450e-8
Identity = 42/132 (31.82%), Postives = 67/132 (50.76%), Query Frame = 1 
Query:    7 SSANIDGLTEKGETRILGLGIGVFLVFLFSILSVVVCLVGATTP--RPGAFACGGAGLLGF--VLLILVIAERESRYV-EDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPIQAIPIYDQR 387
            ++A   GL   G+ R+LG+G+GVFL+  F I    +C  GA  P  R   +     G LGF  V  +L +A+    Y  E++++R  E+D      +VV  ++  A   GL  V   H+  P++A P+  +R
Sbjct:   35 AAAEEQGLRRAGKERVLGVGLGVFLLSFFFIAMCALCWAGALLPQERGEQWIFNVVGTLGFGVVACVLFLADERPEYASEERAER--EHDDNLIGLIVVAGLLACAAAFGLGAVLCYHVCAPVEA-PLVQKR 163
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: A0A7S3CXT2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3CXT2_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 2.930e-7
Identity = 32/117 (27.35%), Postives = 53/117 (45.30%), Query Frame = 1 
Query:   31 TEKGETRILGLGIGVFLVFLFSILSVVVCLVGATTPRPGAFACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPIQAIPIYD 381
            T      +LGLG G+F++ L S+L +V C++G+ T + G        +L  + L L++  R              YD +   R+     MI   + GL GV  +H+  P+   P+ D
Sbjct:    8 TTTPSNLVLGLGPGLFIIILLSVLGIVTCVIGSRTDKSGLIILATTLVLAIIFLSLLLTPRSDT---SNISATKAYDYSIIYRIFFIVCMILGLVAGLIGVLTSHLSVPVFNQPLPD 121
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BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Match: D8TRS0_VOLCA (Transmembrane protein 218 n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TRS0_VOLCA)

HSP 1 Score: 55.5 bits (132), Expect = 3.340e-7
Identity = 32/109 (29.36%), Postives = 56/109 (51.38%), Query Frame = 1 
Query:   49 RILGLGIGVFLVFLFSILSVVVCLVGATTPRPGAFACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIMITATLVGLAGVCVTHIGKPIQAIPI 375
            R+ G+G+GVFL+F F  LSV++CL+G+ +          A + G V L+L+ + +  +  +        YDQT  P +VV  I+    L+   G+ +  +   + A P+
Sbjct:    4 RVAGVGVGVFLLFFFLALSVLICLLGSRSKLRWIVFTASAAMFGIVALVLLASPKGPKRTKPPEG----YDQTIVPLVVVMVILAIGVLMSAVGMLIFALLPTVYARPL 108
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig328.8799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A7S2UVT2_9STRA7.160e-1536.61Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A2J8A4F0_9CHLO3.940e-1132.50Transmembrane protein 218 n=1 Tax=Tetrabaena socia... [more]
A0A7R9YCK5_9STRA1.010e-834.26Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6T5NUG8_HETAK1.120e-833.60Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SSJ6_9STRA5.450e-831.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3CXT2_9EUKA2.930e-727.35Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
D8TRS0_VOLCA3.340e-729.36Transmembrane protein 218 n=1 Tax=Volvox carteri f... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig328contigH-paniculata_contig328:25345..27551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-06_008840.1
Exons4
Model size414
Cds size414
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig328.8799.1prot_H-paniculata_contig328.8799.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig328 25345..27551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930011.4280772-CDS-H-paniculata_contig328:25344..254901622930011.4280772-CDS-H-paniculata_contig328:25344..25490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 25345..25490 +
1691481109.5363379-CDS-H-paniculata_contig328:25344..254901691481109.5363379-CDS-H-paniculata_contig328:25344..25490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 25345..25490 +
1622930011.4416847-CDS-H-paniculata_contig328:25916..260221622930011.4416847-CDS-H-paniculata_contig328:25916..26022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 25917..26022 +
1691481109.5460725-CDS-H-paniculata_contig328:25916..260221691481109.5460725-CDS-H-paniculata_contig328:25916..26022Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 25917..26022 +
1622930011.4605267-CDS-H-paniculata_contig328:26809..269201622930011.4605267-CDS-H-paniculata_contig328:26809..26920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 26810..26920 +
1691481109.5545578-CDS-H-paniculata_contig328:26809..269201691481109.5545578-CDS-H-paniculata_contig328:26809..26920Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 26810..26920 +
1622930011.476554-CDS-H-paniculata_contig328:27500..275511622930011.476554-CDS-H-paniculata_contig328:27500..27551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 27501..27551 +
1691481109.563216-CDS-H-paniculata_contig328:27500..275511691481109.563216-CDS-H-paniculata_contig328:27500..27551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 27501..27551 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig328.8799.1

>prot_H-paniculata_contig328.8799.1 ID=prot_H-paniculata_contig328.8799.1|Name=mRNA_H-paniculata_contig328.8799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=138bp
MSSSANIDGLTEKGETRILGLGIGVFLVFLFSILSVVVCLVGATTPRPGA
FACGGAGLLGFVLLILVIAERESRYVEDKSDRIYEYDQTFYPRLVVFFIM
ITATLVGLAGVCVTHIGKPIQAIPIYDQRTEVRRPIF*
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mRNA from alignment at H-paniculata_contig328:25345..27551+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig328.8799.1 ID=mRNA_H-paniculata_contig328.8799.1|Name=mRNA_H-paniculata_contig328.8799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2207bp|location=Sequence derived from alignment at H-paniculata_contig328:25345..27551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCGTCGGCCAATATTGATGGACTAACTGAAAAGGGAGAGACTCG
TATATTGGGTCTTGGAATCGGGGTGTTCCTAGTCTTCCTTTTTTCCATCC
TCTCTGTGGTCGTGTGTCTTGTCGGTGCCACAACGCCACGGCCGGGGTGA
GTTTCGAGAGGGCAGCGTAGGGAAAGCACACAATAGTAAAAAACGTGGGC
TTACCGTTTGGTCGCGGGGTTTTTCTAACGATAGCGATGTGAACGAAATA
CAACGCATGTGTCGCCACAGTAAATATCGATTAGTCGTGGGCAAGAAAGC
AATTTGGCACCTGCGCAAGAAGGCAATTTGGAACTCGTAGTAGACTCGTT
CTTCCCATCATCGAGGGTTTGAATACCCCGTACCACATGAGCTCTACGCT
TTTTTTAGGAAAGTTATGACAAAATTTTGGAAACACTTGAGGGTGGTAGT
GCCGGATAGCTTCTTTTGGTTGGAATAGGTGCTTCCCTGAGAAAAAGAAA
AAAACGACGGGATCATTAACGCATGTTTGGGCGCCGCCGGCGTTTGTTTA
TCTGCCTTCGTTCCTCACCCAGCGCATTTGCTTGCGGCGGGGCAGGGCTT
CTGGGATTTGTGCTGCTGATCCTTGTCATCGCAGAAAGAGAATCGAGATA
CGTAGAAGACAAGAGCGACCGGATATATGTGAGGAAAGCTCGCGAATATT
GAAGTTATCTATAACGCGCGTGCGTATGGAATTTAGTCTCAGAGGCGGTT
TCTCCAATGAAACAAAGAAAAGCAGGTGTCATTATTGTTGTGTATTCAAT
ACAGGGAATATTGCAATTATATTCAAGACTCAATGGTTACATCCCTCATA
CCAGTACCCATCATCCACCCTTGTAGCTCTCTTCGATATTCTTCGAGCTT
GGAGGATGTCGTGCAGACACATACAAGAGACTGCTGGGCTAAAACCACAA
CCAAGGAAGGGTCGTTCCAATCGAGGCCGCTTTTTGTCTGGCTAATCGGA
TTTTTCCATTGTTCGAACATCGGAAATCGTGATACAAACCGAACAACTTG
ACGACTTTCACCAAAGTGCACAAAGCGTATGAGGGCAACATTCTGTACAA
TGATTTCGAACCGTTTCCAAAACCTTGAACTCGCGATTTTCAACTCTTCG
GAAACAGAAAAATCAGAAATTCGAACAAAAGATGACCTCGTTTTGAAAGA
CCCTAAGGTGTTTGTGTGTCGTCCCCTATCAGCATCACTATCATAGTCAG
TAGGTGCTGTTCATACGCGAGGGAGATCCTACTGTCGCGTGAAATAGTCA
AGATCCAAATCTGCAGTTAGTTATGACATGGAATAAATGGTATCACGTAG
TGTTTTCCTCATGAAAGCTATAGCGTGCAGCTGAAAAGGCGTCCGCGTTC
CTACGCCCGCAATCTTTCCTCGGTCGCGTCCATTATGTATATTTCATTTG
TTTGCACCGTACTAGGAGTATGATCAGACGTTCTACCCGAGGCTGGTCGT
GTTCTTCATCATGATAACGGCAACTTTGGTGGGGCTTGCAGGCGTATGCG
TGACACACATTGGAAAACCGATACAAGTGAGACTGTCGTGGAGAACTTGT
TGCGTTTGGCACTACATCCCAGGCATTTAATCGAGTCGAAACCACGTTAA
CAAACAAGTTCATGGCTATATTTTGGCTTCAGAAAAAACGCATGTTGTCT
CTTCCAGGGTATACCGGGAATCGGTATACCGTAGCAGGCATTACCCACAT
GACGAAAGTGCCCGGGCTCTCGTCGCTAATTATTCCAACCGAAAAGGGCA
CCGCACCAAACTCTCTCTCAATTTTGCCAAACCATTTCGACCACCTTTGT
CTTTTTCTTGACTACTACTGCGGATGCAAAAATGAGCTTTTCCGTAGATG
CACTAGAAAACTTCGGACAATGCCAAAAAAATATACCCTTTGTGATATGC
TAGAGAACGTCGGCGGCTTCATAGAAGAGTATTGCTTCTATTAGCATTGC
ATGCAATCCCAACGTCGTGGCCATGTTTCGTAGTTGTACAACGTGCGCAT
ACCTCGCCTCAAACATGCTTTCGAGAGACTGAATTGTTGTGTTTATGCCC
CACAATTCGATCCCGTATTGTTCATCTTGTTGTGGCGCTTGGTTGTGATC
TCTCAGGCAATACCAATATACGACCAGCGAACGGAAGTGCGACGACCAAT
CTTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig328:25345..27551+

>mRNA_H-paniculata_contig328.8799.1 ID=mRNA_H-paniculata_contig328.8799.1|Name=mRNA_H-paniculata_contig328.8799.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at H-paniculata_contig328:25345..27551+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCCTCGTCGGCCAATATTGATGGACTAACTGAAAAGGGAGAGACTCG
TATATTGGGTCTTGGAATCGGGGTGTTCCTAGTCTTCCTTTTTTCCATCC
TCTCTGTGGTCGTGTGTCTTGTCGGTGCCACAACGCCACGGCCGGGATGT
CCTCGTCGGCCAATATTGATGGACTAACTGAAAAGGGAGAGACTCGTATA
TTGGGTCTTGGAATCGGGGTGTTCCTAGTCTTCCTTTTTTCCATCCTCTC
TGTGGTCGTGTGTCTTGTCGGTGCCACAACGCCACGGCCGGGCGCATTTG
CTTGCGGCGGGGCAGGGCTTCTGGGATTTGTGCTGCTGATCCTTGTCATC
GCAGAAAGAGAATCGAGATACGTAGAAGACAAGAGCGACCGGATATATCG
CATTTGCTTGCGGCGGGGCAGGGCTTCTGGGATTTGTGCTGCTGATCCTT
GTCATCGCAGAAAGAGAATCGAGATACGTAGAAGACAAGAGCGACCGGAT
ATATGAGTATGATCAGACGTTCTACCCGAGGCTGGTCGTGTTCTTCATCA
TGATAACGGCAACTTTGGTGGGGCTTGCAGGCGTATGCGTGACACACATT
GGAAAACCGATACAAGAGTATGATCAGACGTTCTACCCGAGGCTGGTCGT
GTTCTTCATCATGATAACGGCAACTTTGGTGGGGCTTGCAGGCGTATGCG
TGACACACATTGGAAAACCGATACAAGCAATACCAATATACGACCAGCGA
ACGGAAGTGCGACGACCAATCTTCTAAGCAATACCAATATACGACCAGCG
AACGGAAGTGCGACGACCAATCTTCTAA
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