mRNA_H-paniculata_contig328.8795.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig328.8795.1
Unique NamemRNA_H-paniculata_contig328.8795.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig328.8795.1 vs. uniprot
Match: D7FTM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM9_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 2.970e-33
Identity = 70/128 (54.69%), Postives = 94/128 (73.44%), Query Frame = 2 
Query:  809 PLGAMFVPEQDKSGVIRLVSEVLCKPGYTAGPQDERRLLRQIRNGRVDLRTMSRMLLWLQRDGAKKELCQRGLKFIGPSANVQPYTTGIGMSWLLQEVASK-HPAGSRIVVCSSSTYDACAGTIAGLL 1189
            PLG MF PE DKSGV+ +VSE+LC+PG+T GP DERRL R + +GR+D+  MSR+L WL    A +EL +RG++F+ P A  QPYT+G GM+ L++EV ++ HPAG+  VVC SS +DAC+  I G L
Sbjct:  105 PLGFMFRPELDKSGVVAVVSEILCRPGFTVGPDDERRLKRSVESGRIDVHNMSRLLRWLAGRRAARELSERGIEFVVPRA--QPYTSGQGMTRLMEEVVARGHPAGTNFVVCFSSRFDACSAAIRGRL 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig328.8795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTM9_ECTSI2.970e-3354.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig328contigH-paniculata_contig328:1418..5462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_008890.1
Exons2
Model size2267
Cds size1308
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig328.8795.1prot_H-paniculata_contig328.8795.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig328 2097..5182 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.7898428-UTR-H-paniculata_contig328:1417..20961622930010.7898428-UTR-H-paniculata_contig328:1417..2096Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig328 1418..2096 -
1691481109.3172014-UTR-H-paniculata_contig328:1417..20961691481109.3172014-UTR-H-paniculata_contig328:1417..2096Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig328 1418..2096 -
1622930010.8402374-UTR-H-paniculata_contig328:5182..54621622930010.8402374-UTR-H-paniculata_contig328:5182..5462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig328 5183..5462 -
1691481109.3489168-UTR-H-paniculata_contig328:5182..54621691481109.3489168-UTR-H-paniculata_contig328:5182..5462Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig328 5183..5462 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930010.8118494-CDS-H-paniculata_contig328:2096..25851622930010.8118494-CDS-H-paniculata_contig328:2096..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 2097..2585 -
1691481109.3277721-CDS-H-paniculata_contig328:2096..25851691481109.3277721-CDS-H-paniculata_contig328:2096..2585Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 2097..2585 -
1622930010.8244057-CDS-H-paniculata_contig328:4363..51821622930010.8244057-CDS-H-paniculata_contig328:4363..5182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 4364..5182 -
1691481109.341246-CDS-H-paniculata_contig328:4363..51821691481109.341246-CDS-H-paniculata_contig328:4363..5182Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig328 4364..5182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig328.8795.1

>prot_H-paniculata_contig328.8795.1 ID=prot_H-paniculata_contig328.8795.1|Name=mRNA_H-paniculata_contig328.8795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=436bp
MMRHCTPGTMGSCLNDIPVIHRYKMRHDSIRQTGYRSASKTLILAGERII
YPSQYQLGNLDDFDTSAAIPPHNNRCIDRMGKPALPLPLISPPSPPRENE
RVKESEPILPTSTRISITNSGNENRAAICFAGTASTGNGFNQRPSTRPPP
PPATATANQEQQQQRQNLQQQPHHHHPLGAMFVPEQDKSGVIRLVSEVLC
KPGYTAGPQDERRLLRQIRNGRVDLRTMSRMLLWLQRDGAKKELCQRGLK
FIGPSANVQPYTTGIGMSWLLQEVASKHPAGSRIVVCSSSTYDACAGTIA
GLLTDTTTTSPDTPPAMPSISTSSSFDSRSTILRATEASQRGESAVKING
RTGVGGSGTKIRATVALLFDKKPGHRCLDDASRDGSRSDSVKSWYSDGDS
SEGISMMGVGEWVEAYGECDGPMLAAWVFQGSGVK*
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mRNA from alignment at H-paniculata_contig328:1418..5462-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig328.8795.1 ID=mRNA_H-paniculata_contig328.8795.1|Name=mRNA_H-paniculata_contig328.8795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4045bp|location=Sequence derived from alignment at H-paniculata_contig328:1418..5462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGTTCTTTCCAAATGGTTCATTCAGGGCATCATTGAGATCAACAGACAA
CAGCGAGATCTCTACCACACACAACCCCACCAAAAATTCTGTCTACGGCG
ATTTTTCAATCCCAACCCAAAGAACCTTGAGATTGAGTTAATGCAATGGA
GTTCCAGTAAACAACACGAGAGACGGCGACCTTCTGACGAGATAAAAAGG
GTAAACCATGAAGCAATGCTCTGGATGTCCCAAGTTCAAACACGTCAGGA
TAACGAGAACTCCAGAAGACAGATGAGAAGATGATGAGACATTGCACTCC
AGGAACTATGGGTTCGTGCTTAAACGACATTCCCGTCATTCACCGCTATA
AAATGAGGCACGATTCCATACGACAAACGGGCTACCGAAGCGCCAGCAAA
ACGCTCATCTTGGCCGGCGAGAGGATTATCTATCCCTCCCAATATCAGCT
TGGGAACCTTGACGACTTCGACACGTCTGCAGCTATTCCCCCGCATAACA
ACCGGTGCATCGACAGGATGGGCAAGCCAGCACTTCCCCTGCCCCTGATA
TCACCACCATCGCCACCACGAGAAAATGAAAGGGTTAAGGAATCGGAACC
AATCCTACCAACGTCTACCCGTATCTCCATCACCAACAGCGGGAACGAAA
ATCGGGCCGCCATCTGTTTTGCTGGGACGGCCTCAACCGGTAACGGATTC
AACCAGCGACCATCAACCCGCCCGCCGCCACCTCCGGCAACAGCTACAGC
AAACCAAGAACAGCAACAGCAACGGCAGAATCTACAGCAACAACCACATC
ATCACCATCCACTAGGAGCCATGTTTGTTCCAGAACAAGACAAGTCTGGA
GTGATTCGTCTCGTGTCAGAAGTCCTGTGCAAGCCTGGTTACACGGCAGG
CCCACAGGACGAGAGACGGCTGCTGAGGCAAATCAGGAACGGGCGGGTCG
ACCTACGAACGATGTCGAGGATGTTGCTGTGGCTTCAGCGGGACGGTGCG
AAGAAAGAGTTGTGTCAGCGTGGGCTGAAGTTTATCGGGCCCTCGGCGAA
CGTCCAGCCGTATACTACGGGCATAGGCATGAGCTGGCTGTTACAAGAGG
TATGCGAGTTGACTGGATTGTCATGTCGACAAAAAACGTACAGCGAAGAG
CGCAACACTGGCTATATAAGACGAGCGTTGTACAAAATATAGCATATATT
TTACACAGAAGATAGAATACAGTACACGGCAACATTTCATCGCCGCACGA
CACTACATAGTACAGTACCGAGCGGACAACGGGTAATACAATTGTTCTGT
CTCTGTGGAAGGCTGGTCTACACGCGCCTCCCCAGACGGCTTGTGGTCTA
AGTACATGCCAACTGTACTATGAGCATTCGCCATCATGCTGGACGTTATC
CAGGGTGCCACATGGCAATCTCTGCATGACACTTCTTTTGTAGTGATTCG
GAAAAGCCTCCTGTAGACCGTTACTTATCGGGGACGTCTTGAAAAGAAAA
GATGGGTTTCGGCGAGTTGTGGACCAACAAGATTGGAGTTGGTGGGAATT
GGTCGCGTGTGTGGTGTGGAGGGTATTGGTCGTACATTTTTTGCAGTTTC
TAAGCCGTGGGATTGCCATTTTCGCCGCATTAGCCCAGATACGCCTTTTT
TTTCAGAGGAGTTTGGGAAAAACTAGCGAAAAGAGCAAGTTTCCAGCTTG
CGAGCAGCAACAAGTGGATGGGTAGTAAGATATCCTCTAAACACACATGA
GATTTATTTTCTACCAACTCCAATCACTCTGGTTCGAAACTCGGCAACGT
TTGTGCCGCCGAAGCCCTCTTTTCTTGAAAAAATAACGTCCATGATAAGA
AGTGCATTATATGTACTAGTAGATTCAATTCATGCTCGCTCGCGAAAAGT
ACGCCCTGTGCTCGAAACCTTGCGTTTCACCATCCTGTCATCCCGCGTAC
GTGCTACGGCAAAATCGTGCTGTCGCGCAAATTGAGTTTTCTCCTCTTCG
AAATTTCAAGAACTGAAATCGATCCTGCTGGTAGAGCATGATAATGTTCG
TCGGTTGAGTGTAGTTTTGGCCAAACCATTTCAAGCCCCAAGAAGACGAC
AAAACCGAAATCATCACTGGCGTAGAGCACAAATCGTCACCTGGCGTAGC
GACAATTCTCTAGCACAATGTATTGTCTATATAAAAAATACAAGCAGATG
CAACGCTTACTCGGCTAGAATAATCGAATACGTACATGTAGAGACAGTTG
GACACAAGCGGTGTAGGCGACACCTATCGACTGCGACTGGCTGTGGACCA
AAAGAGCACTAAAGAGCGCTCCACAACGATCATGAACTGACTCCATGTCT
GTCGCCTTGAATTTACGTGGCCGCAAACATGGATCACGACCACTGCTGCT
AAGCTGGGGGTCACAGCGCACTATATCCTAAATCGCCATATCCAAGTCGT
TGCCGTAGAGGGGAGCAATCCTGAAATTGGCAGCCTACGCAGCAAATTGA
CGCAGCATTGCAGAAAGCACAGCCTCTGCGGGTACTCGTTCTATTTATTG
TCGTTGTTTCTGCTCCATGGCGCGTGTTCAAACCCATCCGTAGCACTTCG
CCCACACAGAAGGAATGGCGAGGTCTCACTATGCAGCAATTTACGCCACT
GCTCATTTACCCCCCGTAAATGAATTGCACTATTTGACACTTTTGGAGGG
ATCGCGTGCTTCCCACAGCTCAACTTTGTATTTTTTTTCTTGTTTATGGT
AATTAGTAAAACTCTGTCACTTGACGCTGTCATTTGAAAACGATAATAAT
GCGCCAGTTCTACTGCACATCGGCGTTTTTGTAACCATTCGACACTCTGC
TCGCGTGCTTTCTCCATCCCTGCACAGGTGGCCAGCAAGCACCCCGCTGG
ATCCAGAATTGTCGTGTGTTCCTCTTCAACCTACGACGCATGCGCTGGCA
CTATCGCAGGCTTGCTAACCGACACCACCACCACGTCCCCAGATACCCCC
CCAGCAATGCCATCGATTTCCACATCTTCGTCTTTTGATAGTCGCTCAAC
GATACTACGCGCCACGGAGGCATCGCAGCGGGGGGAGAGCGCAGTGAAGA
TAAACGGACGAACTGGGGTTGGTGGAAGCGGCACGAAAATTCGCGCCACA
GTCGCTCTCTTGTTCGATAAAAAGCCTGGACATCGTTGCCTTGATGATGC
AAGTCGCGACGGTAGTAGATCTGACAGCGTGAAGAGTTGGTATAGTGACG
GAGATTCTTCGGAAGGTATTTCAATGATGGGGGTCGGCGAGTGGGTGGAG
GCCTATGGAGAGTGCGATGGGCCTATGCTTGCGGCGTGGGTATTCCAGGG
CTCTGGGGTGAAATGAAACGCGACAGTAACGGAGTGCCACTGCTTGAAAA
CACTTGATGGGACGGTGTATATCGGAGACCGTGGACTATGCCGATCTAGT
ACTGGTATTGAAGGATTTTCTGGGGATTTGGGTACGTTATCGGATGAACG
CAGAACGAGGCGTGTTGAGTCGCTCGATGAATCCGACCAGCTGCCTACTC
TTTGTACATAATCTAGGCGCGCGTGTACATAGAACATTATGTCGATATTT
TATGTTCCATCTTGTATCAAGAGTGGGGGATAACCAGCTACAGTTTATCG
TTGAAATTGATAATATATAACGCTCCGCTTCTAGGCGATGATGCACGCTG
ATGTGTCAGTGGGAGCTTGGTCGACTGATCAGGCAGTCGATACCTAGCAT
AGTGGCCCTATGTGCGTGAGGAGATATGCTTGGAATTTTTGCATATTATG
CTTACGTAGAGAACGGAAAAAATGCACAGAGACGAATTCAAGAAACGTAA
TAAGCGATGCATAAATGTATACAAGCTGAATATGTGCAATATAACTCTCC
AAGAGAGGAGGAATTGGGGCATATCACAAGGTGCTCCAGGAACCCAACTC
CGCACAGCACGCGGAGCATGTCAAAGAAGATGTGACTTGCACGTTTCAGA
TAGATCCGAGCGATGTGCTTCTCGACGAAAATAGTTTTGCGCAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig328:1418..5462-

>mRNA_H-paniculata_contig328.8795.1 ID=mRNA_H-paniculata_contig328.8795.1|Name=mRNA_H-paniculata_contig328.8795.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2616bp|location=Sequence derived from alignment at H-paniculata_contig328:1418..5462- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGAGACATTGCACTCCAGGAACTATGGGTTCGTGCTTAAACGACAT
TCCCGTCATTCACCGCTATAAAATGAGGCACGATTCCATACGACAAACGG
GCTACCGAAGCGCCAGCAAAACGCTCATCTTGGCCGGCGAGAGGATTATC
TATCCCTCCCAATATCAGCTTGGGAACCTTGACGACTTCGACACGTCTGC
AGCTATTCCCCCGCATAACAACCGGTGCATCGACAGGATGGGCAAGCCAG
CACTTCCCCTGCCCCTGATATCACCACCATCGCCACCACGAGAAAATGAA
AGGGTTAAGGAATCGGAACCAATCCTACCAACGTCTACCCGTATCTCCAT
CACCAACAGCGGGAACGAAAATCGGGCCGCCATCTGTTTTGCTGGGACGG
CCTCAACCGGTAACGGATTCAACCAGCGACCATCAACCCGCCCGCCGCCA
CCTCCGGCAACAGCTACAGCAAACCAAGAACAGCAACAGCAACGGCAGAA
TCTACAGCAACAACCACATCATCACCATCCACTAGGAGCCATGTTTGTTC
CAGAACAAGACAAGTCTGGAGTGATTCGTCTCGTGTCAGAAGTCCTGTGC
AAGCCTGGTTACACGGCAGGCCCACAGGACGAGAGACGGCTGCTGAGGCA
AATCAGGAACGGGCGGGTCGACCTACGAACGATGTCGAGGATGTTGCTGT
GGCTTCAGCGGGACGGTGCGAAGAAAGAGTTGTGTCAGCGTGGGCTGAAG
TTTATCGGGCCCTCGGCGAACGTCCAGCCGTATACTACGGGCATAGGCAT
GAGCTGGCTGTTACAAGAGATGATGAGACATTGCACTCCAGGAACTATGG
GTTCGTGCTTAAACGACATTCCCGTCATTCACCGCTATAAAATGAGGCAC
GATTCCATACGACAAACGGGCTACCGAAGCGCCAGCAAAACGCTCATCTT
GGCCGGCGAGAGGATTATCTATCCCTCCCAATATCAGCTTGGGAACCTTG
ACGACTTCGACACGTCTGCAGCTATTCCCCCGCATAACAACCGGTGCATC
GACAGGATGGGCAAGCCAGCACTTCCCCTGCCCCTGATATCACCACCATC
GCCACCACGAGAAAATGAAAGGGTTAAGGAATCGGAACCAATCCTACCAA
CGTCTACCCGTATCTCCATCACCAACAGCGGGAACGAAAATCGGGCCGCC
ATCTGTTTTGCTGGGACGGCCTCAACCGGTAACGGATTCAACCAGCGACC
ATCAACCCGCCCGCCGCCACCTCCGGCAACAGCTACAGCAAACCAAGAAC
AGCAACAGCAACGGCAGAATCTACAGCAACAACCACATCATCACCATCCA
CTAGGAGCCATGTTTGTTCCAGAACAAGACAAGTCTGGAGTGATTCGTCT
CGTGTCAGAAGTCCTGTGCAAGCCTGGTTACACGGCAGGCCCACAGGACG
AGAGACGGCTGCTGAGGCAAATCAGGAACGGGCGGGTCGACCTACGAACG
ATGTCGAGGATGTTGCTGTGGCTTCAGCGGGACGGTGCGAAGAAAGAGTT
GTGTCAGCGTGGGCTGAAGTTTATCGGGCCCTCGGCGAACGTCCAGCCGT
ATACTACGGGCATAGGCATGAGCTGGCTGTTACAAGAGGTGGCCAGCAAG
CACCCCGCTGGATCCAGAATTGTCGTGTGTTCCTCTTCAACCTACGACGC
ATGCGCTGGCACTATCGCAGGCTTGCTAACCGACACCACCACCACGTCCC
CAGATACCCCCCCAGCAATGCCATCGATTTCCACATCTTCGTCTTTTGAT
AGTCGCTCAACGATACTACGCGCCACGGAGGCATCGCAGCGGGGGGAGAG
CGCAGTGAAGATAAACGGACGAACTGGGGTTGGTGGAAGCGGCACGAAAA
TTCGCGCCACAGTCGCTCTCTTGTTCGATAAAAAGCCTGGACATCGTTGC
CTTGATGATGCAAGTCGCGACGGTAGTAGATCTGACAGCGTGAAGAGTTG
GTATAGTGACGGAGATTCTTCGGAAGGTATTTCAATGATGGGGGTCGGCG
AGTGGGTGGAGGCCTATGGAGAGTGCGATGGGCCTATGCTTGCGGCGTGG
GTATTCCAGGGCTCTGGGGTGAAATGAGTGGCCAGCAAGCACCCCGCTGG
ATCCAGAATTGTCGTGTGTTCCTCTTCAACCTACGACGCATGCGCTGGCA
CTATCGCAGGCTTGCTAACCGACACCACCACCACGTCCCCAGATACCCCC
CCAGCAATGCCATCGATTTCCACATCTTCGTCTTTTGATAGTCGCTCAAC
GATACTACGCGCCACGGAGGCATCGCAGCGGGGGGAGAGCGCAGTGAAGA
TAAACGGACGAACTGGGGTTGGTGGAAGCGGCACGAAAATTCGCGCCACA
GTCGCTCTCTTGTTCGATAAAAAGCCTGGACATCGTTGCCTTGATGATGC
AAGTCGCGACGGTAGTAGATCTGACAGCGTGAAGAGTTGGTATAGTGACG
GAGATTCTTCGGAAGGTATTTCAATGATGGGGGTCGGCGAGTGGGTGGAG
GCCTATGGAGAGTGCGATGGGCCTATGCTTGCGGCGTGGGTATTCCAGGG
CTCTGGGGTGAAATGA
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