mRNA_H-paniculata_contig32726.8784.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32726.8784.1
Unique NamemRNA_H-paniculata_contig32726.8784.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: D8LLD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD4_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 5.170e-21
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   25 LAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGRTVD-CSISAPNQGRTASLT 228
            +AAVQP+VTPAWVV ++ TVGVLFVPLG WLKL+ ADVVE+ QQYEG G TVD CSIS  N+G+    +
Sbjct:    1 MAAVQPVVTPAWVVGLFMTVGVLFVPLGTWLKLKYADVVELTQQYEGSGTTVDDCSISEANEGKEVKFS 69
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: K8ZAE5_NANGC (Transmembrane protein 30a (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8ZAE5_NANGC)

HSP 1 Score: 76.6 bits (187), Expect = 2.860e-15
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGRT---VDCSISAPNQ 207
            DTAF+QQRL A QPI+TP WV+  +T VG++FVPLG+ LK+++  +VE   QY+G+G      DC I  PN+
Sbjct:   19 DTAFKQQRLPAWQPILTPKWVIITFTLVGLIFVPLGIVLKIQSDAIVEYSLQYDGEGTPESLADCQILDPNE 90
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: A0A4D9DA20_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DA20_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.640e-14
Identity = 37/72 (51.39%), Postives = 51/72 (70.83%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGRT---VDCSISAPNQ 207
            DTAF+QQRL A QPI+TP WV+  +T VG++FVPLG+ LK+++  +VE   QY+G+G      DC I  PN+
Sbjct:   61 DTAFKQQRLPAWQPILTPKWVIITFTLVGLIFVPLGIVLKIQSDAIVEYSLQYDGEGTPESLADCQILDPNE 132
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: A0A6U4G101_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G101_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 6.320e-12
Identity = 39/79 (49.37%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGR---TVDCSISAPNQGRTASLT 228
            DT F+QQRL A QPI+TPAWV+  +  VG++FVP+GV LK  + +VVE + QY+G G    + DC+IS   +  T  LT
Sbjct:   54 DTDFKQQRLKAWQPILTPAWVIGTFLLVGIIFVPVGVVLKGLSDEVVEYKCQYDGSGADEDSSDCTISPSCKITTDDLT 132
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: A0A7S3H696_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H696_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.930e-11
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = 1 
Query:   10 FRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGRTVDCSISAPNQGRTASLTW 231
            FRQQ+L A QPI+TP  VVAI+  +GV F+P GV L   +  + E    Y+G  + V CSIS  N+G+  SLT+
Sbjct:   15 FRQQKLKAWQPIMTPLKVVAIFVAIGVAFIPTGVSLMNSSNAIYEKRIMYDGSNQAVSCSISDQNEGKVCSLTF 88
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: W4GUP3_9STRA (Uncharacterized protein n=12 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GUP3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.990e-11
Identity = 42/109 (38.53%), Postives = 58/109 (53.21%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGRTVDCSISAPNQGRTASLTW*REPIVTCTC*NLRESTGGT*GSKLFRVRFKI 327
            DT F+QQ+L A QPI+TPAWV+A Y  VG++F+P+GV L  +N DVVE+  QY+G    VD S      G +        P  +C+  N  +            V FK+
Sbjct:   15 DTPFKQQKLKAWQPILTPAWVIATYFLVGLIFLPIGVVLYQQNLDVVEMAIQYDG----VDASTGLSTLGASLQNL---SPTSSCSLPNDSDGNSFNLNEHGCVVSFKL 116
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: A0A6G0W2K1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2K1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.000e-11
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEG 165
            DT F+QQRL A QPI+TPAWV+  Y  VG++F+P+GV L  EN DVVE+  QY+G
Sbjct:   17 DTPFKQQRLKAWQPILTPAWVIGTYFLVGLIFIPIGVVLYHENLDVVEMGVQYDG 71
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: A0A485KPP6_9STRA (Aste57867_10044 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPP6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.430e-11
Identity = 32/56 (57.14%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGK 168
            DT F+QQRL A QPI+TP+WV+  Y  VG++F+P+GV L  +N DVVE+  QY+GK
Sbjct:   17 DTPFKQQRLKAWQPILTPSWVIGTYFLVGLIFIPIGVILYHQNMDVVEMGIQYDGK 72
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: A0A024U3F0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U3F0_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 7.470e-11
Identity = 38/92 (41.30%), Postives = 52/92 (56.52%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGR----------------TVDCSISAPNQGRTASLT 228
            DT F+QQ+L A QPI+TPAWV+  Y  VG++FVP+GV L  +N DVVE+  QY+G                   T  CS+   + G + +LT
Sbjct:   15 DTPFKQQKLKAWQPILTPAWVIGTYFLVGLIFVPIGVVLYQQNLDVVEMAIQYDGLDSSSGLATLGASVQNLSPTSSCSLPNDSDGNSFNLT 106
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BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Match: F0WPX8_9STRA (Uncharacterized protein AlNc14C191G8456 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WPX8_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 9.990e-11
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 1 
Query:    1 DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVEQQYEGKGRTVDCSISAPNQGRTASL 225
            DT F+QQRL A QPI+TP WV+  +  VG++F+P+GV L  E+ +VVE   QY+GK  T   S +  N GR   L
Sbjct:   10 DTPFKQQRLKAWQPILTPNWVIGTFFIVGLIFIPIGVVLHTESENVVEYSVQYDGKN-TPSASENIANLGRGCYL 83
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32726.8784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLD4_ECTSI5.170e-2166.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K8ZAE5_NANGC2.860e-1551.39Transmembrane protein 30a (Fragment) n=1 Tax=Nanno... [more]
A0A4D9DA20_9STRA5.640e-1451.39Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6U4G101_9STRA6.320e-1249.37Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3H696_9STRA1.930e-1147.30Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
W4GUP3_9STRA3.990e-1138.53Uncharacterized protein n=12 Tax=Aphanomyces astac... [more]
A0A6G0W2K1_9STRA4.000e-1160.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KPP6_9STRA7.430e-1157.14Aste57867_10044 protein n=1 Tax=Aphanomyces stella... [more]
A0A024U3F0_9STRA7.470e-1141.30Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
F0WPX8_9STRA9.990e-1148.00Uncharacterized protein AlNc14C191G8456 n=1 Tax=Al... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32726contigH-paniculata_contig32726:1963..2316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog2880.D8LLD4
Preferred nameTMEM30B
KEGG koko:K08817
Hectar predicted targeting categorysignal anchor
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0010008,GO:0010570,GO:0010720,GO:0010876,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015247,GO:0015605,GO:0015711,GO:0015748,GO:0015833,GO:0015893,GO:0015914,GO:0015917,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022857,GO:0023052,GO:0030141,GO:0030154,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031344,GO:0031346,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034204,GO:0034220,GO:0034613,GO:0035577,GO:0035579,GO:0036010,GO:0036230,GO:0040008,GO:0042119,GO:0042221,GO:0042493,GO:0042581,GO:0042582,GO:0042623,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043492,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045332,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0051960,GO:0051962,GO:0055085,GO:0060284,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070861,GO:0070863,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090087,GO:0090316,GO:0097035,GO:0097708,GO:0098588,GO:0098656,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0099503,GO:0120035,GO:1902494,GO:1903827,GO:1903829,GO:1904949,GO:1904951,GO:1990351,GO:1990530,GO:1990531,GO:2000026
EggNOG free text desc.aminophospholipid transmembrane transporter activity
EggNOG OGsCOG5035@1,KOG2952@2759
EC2.7.11.22
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Exons1
Model size356
Cds size234
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.4615881-CDS-H-paniculata_contig32726:1962..21961622930009.4615881-CDS-H-paniculata_contig32726:1962..2196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32726 1963..2196 +
1691481108.7296882-CDS-H-paniculata_contig32726:1962..21961691481108.7296882-CDS-H-paniculata_contig32726:1962..2196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32726 1963..2196 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930009.4742708-UTR-H-paniculata_contig32726:2196..23161622930009.4742708-UTR-H-paniculata_contig32726:2196..2316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32726 2197..2316 +
1691481108.7392244-UTR-H-paniculata_contig32726:2196..23161691481108.7392244-UTR-H-paniculata_contig32726:2196..2316Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32726 2197..2316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32726.8784.1prot_H-paniculata_contig32726.8784.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32726 1963..2196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32726.8784.1

>prot_H-paniculata_contig32726.8784.1 ID=prot_H-paniculata_contig32726.8784.1|Name=mRNA_H-paniculata_contig32726.8784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
DTAFRQQRLAAVQPIVTPAWVVAIYTTVGVLFVPLGVWLKLENADVVEVE
QQYEGKGRTVDCSISAPNQGRTASLTW*
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mRNA from alignment at H-paniculata_contig32726:1963..2316+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32726.8784.1 ID=mRNA_H-paniculata_contig32726.8784.1|Name=mRNA_H-paniculata_contig32726.8784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig32726:1963..2316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCGCATTCCGGCAGCAGCGACTGGCAGCCGTGCAGCCGATCGTCAC
GCCCGCGTGGGTAGTAGCGATCTATACGACCGTTGGTGTGCTATTCGTGC
CCTTGGGAGTCTGGCTAAAGCTCGAGAATGCGGACGTGGTGGAAGTTGAG
CAACAATACGAGGGCAAAGGAAGGACAGTTGACTGTTCGATCTCGGCACC
TAATCAAGGTCGAACGGCGAGTTTAACATGGTGAAGGGAGCCTATCGTCA
CGTGCACTTGTTAAAACCTAAGAGAAAGTACTGGTGGTACATAAGGTTCA
AAACTCTTTCGGGTGAGGTTCAAAATTTGATTTTTTGACGAGAATCAAGA
GCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig32726:1963..2316+

>mRNA_H-paniculata_contig32726.8784.1 ID=mRNA_H-paniculata_contig32726.8784.1|Name=mRNA_H-paniculata_contig32726.8784.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig32726:1963..2316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCGCATTCCGGCAGCAGCGACTGGCAGCCGTGCAGCCGATCGTCAC
GCCCGCGTGGGTAGTAGCGATCTATACGACCGTTGGTGTGCTATTCGTGC
CCTTGGGAGTCTGGCTAAAGCTCGAGAATGCGGACGTGGTGGAAGTTGAG
CAACAATACGAGGGCAAAGGAAGGACAGTTGACTGTTCGATCTCGGCACC
TAATCAAGGTCGAACGGCGAGTTTAACATGGTGAGACACCGCATTCCGGC
AGCAGCGACTGGCAGCCGTGCAGCCGATCGTCACGCCCGCGTGGGTAGTA
GCGATCTATACGACCGTTGGTGTGCTATTCGTGCCCTTGGGAGTCTGGCT
AAAGCTCGAGAATGCGGACGTGGTGGAAGTTGAGCAACAATACGAGGGCA
AAGGAAGGACAGTTGACTGTTCGATCTCGGCACCTAATCAAGGTCGAACG
GCGAGTTTAACATGGTGA
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