mRNA_H-paniculata_contig11367.878.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig11367.878.1
Unique NamemRNA_H-paniculata_contig11367.878.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: D7G0R1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R1_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 1.750e-48
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 MEAVDARGAEDATVAAEGRSKMDGVMSAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            MEAVDARGA+D  VAAEGRSKM GVMS+ELPTHPQMREG+LPNGLRYIILNNQSPPERFEAHLEVFAGSADEL+SQQGMAHLVEHVAYMGSRKR
Sbjct:  155 MEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELESQQGMAHLVEHVAYMGSRKR 248
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A6H5JCY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY0_9PHAE)

HSP 1 Score: 174 bits (440), Expect = 2.040e-48
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 1 
Query:    1 MEAVDARGAEDATVAAEGRSKMDGVMSAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            MEAVDARGA+D  VAAEGRSKM GVMS+ELPTHPQMREG+LPNGLRYIILNNQSPPERFEAHLEVFAGSADEL+SQQGMAHLVEHVAYMGSRKR
Sbjct:  249 MEAVDARGAQDEVVAAEGRSKMQGVMSSELPTHPQMREGMLPNGLRYIILNNQSPPERFEAHLEVFAGSADELESQQGMAHLVEHVAYMGSRKR 342
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A836C760_9STRA (Stromal processing peptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C760_9STRA)

HSP 1 Score: 127 bits (319), Expect = 4.220e-32
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 1 
Query:   64 MDGVMSAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            +D V+ A LP+HP MR G+LPNGLRYIIL N SPPERFEAHLEVFAGSADELD QQGMAHLVEH+AYMGSRKR
Sbjct:    9 LDDVLRAALPSHPLMRSGVLPNGLRYIILPNASPPERFEAHLEVFAGSADELDKQQGMAHLVEHIAYMGSRKR 81
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A1E7FUG4_9STRA (Peptidase_M16 domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FUG4_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.960e-27
Identity = 50/68 (73.53%), Postives = 57/68 (83.82%), Query Frame = 1 
Query:   79 SAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            S  LP HP +R G LPNGL Y+IL N+SPP RFEAHL+VF+GSADEL+ QQG+AHL EHVAYMGSRKR
Sbjct:  120 SEPLPVHPDVRSGTLPNGLPYVILPNKSPPGRFEAHLQVFSGSADELEPQQGIAHLTEHVAYMGSRKR 187
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: W7U2D5_9STRA (Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U2D5_9STRA)

HSP 1 Score: 111 bits (277), Expect = 1.980e-26
Identity = 49/78 (62.82%), Postives = 65/78 (83.33%), Query Frame = 1 
Query:   49 EGRSKMDGVMSAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            E  +++  +M  +LP HP +++G+LPNGLRY IL N +PP RF+A LE+FAGSADEL+SQQGMAH+VEH++YMGSRKR
Sbjct:  160 EAPTRLAELMQTDLPEHPGLKKGVLPNGLRYAILRNAAPPGRFDAFLEIFAGSADELESQQGMAHIVEHISYMGSRKR 237
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A1E7ETK2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ETK2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 1.280e-25
Identity = 50/68 (73.53%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:   79 SAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            S  LP HP++R G LPNGL Y+IL N+SPP RFEAHL+VF+GSADEL+ QQG+AHL EHVAYMGSRKR
Sbjct:  108 SEPLPVHPEVRSGTLPNGLPYVILPNKSPPGRFEAHLQVFSGSADELEPQQGIAHLTEHVAYMGSRKR 175
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A2G3AQH4_CAPCH (Peptidase_M16 domain-containing protein n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQH4_CAPCH)

HSP 1 Score: 103 bits (256), Expect = 1.720e-25
Identity = 45/77 (58.44%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   52 GRSKMDGVMSAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            GR++ D  +S+ELP+HP++  G L NGLRY+IL N+ PP RFEAH+EV  GS DE D +QG+AH++EHVA++GS+KR
Sbjct:   58 GRAEFDQFLSSELPSHPKLYRGQLKNGLRYLILPNKVPPNRFEAHMEVHVGSIDEEDDEQGIAHMIEHVAFLGSKKR 134
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A6P5GV35_ANACO (stromal processing peptidase, chloroplastic-like n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GV35_ANACO)

HSP 1 Score: 104 bits (260), Expect = 3.470e-25
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 1 
Query:   58 SKMDGVMSAELPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            +++DG +S+ LPTHP++  G L NGLRYIIL N++PP RFEAH+EV  GS DE D +QG+AH++EHVA++GS+KR
Sbjct:  185 TELDGFLSSPLPTHPKLHRGQLKNGLRYIILPNKTPPNRFEAHMEVHVGSIDEEDDEQGIAHMIEHVAFLGSKKR 259
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BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A7S2SQE6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQE6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.880e-25
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   88 LPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            LP HP +R G L NGLRY++L NQSP  RFEAHLE+ AGSADELD QQGMAHLVEH+ YMGSRKR
Sbjct:  130 LPLHPDLRTGTLSNGLRYVLLPNQSPAGRFEAHLEILAGSADELDKQQGMAHLVEHIVYMGSRKR 194
[Close]
BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Match: A0A7S2SQG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQG9_9STRA)

HSP 1 Score: 107 bits (266), Expect = 6.070e-25
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:   88 LPTHPQMREGILPNGLRYIILNNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR 282
            LP HP +R G L NGLRY++L NQSP  RFEAHLE+ AGSADELD QQGMAHLVEH+ YMGSRKR
Sbjct:  130 LPLHPDLRTGTLSNGLRYVLLPNQSPAGRFEAHLEILAGSADELDKQQGMAHLVEHIVYMGSRKR 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11367.878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0R1_ECTSI1.750e-4892.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCY0_9PHAE2.040e-4892.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C760_9STRA4.220e-3282.19Stromal processing peptidase n=1 Tax=Tribonema min... [more]
A0A1E7FUG4_9STRA1.960e-2773.53Peptidase_M16 domain-containing protein n=1 Tax=Fr... [more]
W7U2D5_9STRA1.980e-2662.82Peptidase M16 n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A1E7ETK2_9STRA1.280e-2573.53Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A2G3AQH4_CAPCH1.720e-2558.44Peptidase_M16 domain-containing protein n=1 Tax=Ca... [more]
A0A6P5GV35_ANACO3.470e-2560.00stromal processing peptidase, chloroplastic-like n... [more]
A0A7S2SQE6_9STRA5.880e-2575.38Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2SQG9_9STRA6.070e-2575.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig11367contigH-paniculata_contig11367:6648..7963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.4
Seed ortholog evalue6.3e-42
Seed eggNOG ortholog2880.D7G0R1
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0007275,GO:0008150,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0010154,GO:0022414,GO:0032501,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458
EggNOG free text desc.Belongs to the peptidase M16 family
EggNOG OGsCOG1025@1,KOG0959@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928844.2608147-CDS-H-paniculata_contig11367:6647..68391622928844.2608147-CDS-H-paniculata_contig11367:6647..6839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11367 6648..6839 +
1691480641.9373689-CDS-H-paniculata_contig11367:6647..68391691480641.9373689-CDS-H-paniculata_contig11367:6647..6839Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11367 6648..6839 +
1622928844.2788978-CDS-H-paniculata_contig11367:7870..79631622928844.2788978-CDS-H-paniculata_contig11367:7870..7963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11367 7871..7963 +
1691480641.9490895-CDS-H-paniculata_contig11367:7870..79631691480641.9490895-CDS-H-paniculata_contig11367:7870..7963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig11367 7871..7963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig11367.878.1prot_H-paniculata_contig11367.878.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig11367 6648..7963 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig11367.878.1

>prot_H-paniculata_contig11367.878.1 ID=prot_H-paniculata_contig11367.878.1|Name=mRNA_H-paniculata_contig11367.878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=95bp
MEAVDARGAEDATVAAEGRSKMDGVMSAELPTHPQMREGILPNGLRYIIL
NNQSPPERFEAHLEVFAGSADELDSQQGMAHLVEHVAYMGSRKR*
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mRNA from alignment at H-paniculata_contig11367:6648..7963+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig11367.878.1 ID=mRNA_H-paniculata_contig11367.878.1|Name=mRNA_H-paniculata_contig11367.878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1316bp|location=Sequence derived from alignment at H-paniculata_contig11367:6648..7963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCGGTTGATGCTAGAGGTGCTGAAGACGCTACCGTCGCGGCAGA
GGGCAGAAGCAAGATGGACGGTGTCATGTCGGCGGAGCTCCCTACACATC
CTCAGATGCGAGAGGGTATCTTGCCCAATGGCTTGCGGTACATCATCCTC
AACAATCAGAGCCCGCCGGAGAGGTTCGAGGCACACCTAGAGGTGAGAGT
TGGTGTGGTGATGACGTAAAACGAGGGGGGTAGGCATTGATATCACCTGG
GTAGGCATGTTTGTTAAATGGGATGATCATCTCGAAACCGGAAACATTTC
GCGGTCGAAAGAATCCGTGAATTGATGGATTTTATTTTTAGCAAGGTATT
TCCAACGGTACACTTTTTATGTTCGTTGGCGGTTTGTTTGCGCCGTAGTT
GTTGATAGAAGCAATCGCTTTCGAAAAGTATTCGCACCACGATTTTTTCG
ATACCTGGTGTATCTCCGGGTTTCGACACTTGAAGAGATCTTGGGGAGAT
CTGACTTGCAGCTATTACGGAGGAACATAATAATCAGGAACATTTCTTTT
GGTTTTTCGGAAACTGATTTTTTTTTTTTCCCCCGTTGGTGTACAGATTT
TCGCTTCTAGCTGAAAACAAAAACACACTCTAAAAAACACTTGCACAGGC
ATGCAGCAAACCGATTGGTGCATCATATCGTATTGCATGAGTTACACCTC
AACATGTCAATTTTCTAATTTGCTCCTGATTATTATGTTCCTCCTTAACA
GAGGTTGGTTTTATGAGTACACGTGAAGGTAGAGTAGAAATTGTTATCTT
GACGGATTTAGCTAGAAGCCATGGTTGATGTTTTGAATACAGCCGGAGCT
GAAAGTTGGAGTTGGGATATCCAGGAATATGGATTGATGGCTTTTTTTTA
TCGTCATGCGTATCATACCAACCTGGGAGACTTGGAGTTGCAATCTTGGG
AAATTTTTATCATAACACCTGCAGATGAAACTTGAATTTGTTATCCTGAT
ATGTCGCCGTTTGTAGTTCAGCGGGAGTTGATATTGATAAGTTCGAACTA
GTTGATAAGAAAAAATACTTCTAGTAGACGGATACTTGATGTACTTCTGT
TCTAACGCCCACACTGCAATGACACGTTAGTCATTTTCCAATGAAACTGT
TATCAAACCGTTGTCATATTCCATTTGCGCTGTTGACATTTTTCTATTGT
TCCGCTGTTATTAATTCATCCAGGTGTTTGCCGGGTCAGCGGACGAGCTG
GATTCTCAACAGGGCATGGCCCACCTGGTGGAGCACGTAGCATATATGGG
AAGCAGGAAGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig11367:6648..7963+

>mRNA_H-paniculata_contig11367.878.1 ID=mRNA_H-paniculata_contig11367.878.1|Name=mRNA_H-paniculata_contig11367.878.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=570bp|location=Sequence derived from alignment at H-paniculata_contig11367:6648..7963+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGCGGTTGATGCTAGAGGTGCTGAAGACGCTACCGTCGCGGCAGA
GGGCAGAAGCAAGATGGACGGTGTCATGTCGGCGGAGCTCCCTACACATC
CTCAGATGCGAGAGGGTATCTTGCCCAATGGCTTGCGGTACATCATCCTC
AACAATCAGAGCCCGCCGGAGAGGTTCGAGGCACACCTAGAGATGGAGGC
GGTTGATGCTAGAGGTGCTGAAGACGCTACCGTCGCGGCAGAGGGCAGAA
GCAAGATGGACGGTGTCATGTCGGCGGAGCTCCCTACACATCCTCAGATG
CGAGAGGGTATCTTGCCCAATGGCTTGCGGTACATCATCCTCAACAATCA
GAGCCCGCCGGAGAGGTTCGAGGCACACCTAGAGGTGTTTGCCGGGTCAG
CGGACGAGCTGGATTCTCAACAGGGCATGGCCCACCTGGTGGAGCACGTA
GCATATATGGGAAGCAGGAAGAGGTAAGTGTTTGCCGGGTCAGCGGACGA
GCTGGATTCTCAACAGGGCATGGCCCACCTGGTGGAGCACGTAGCATATA
TGGGAAGCAGGAAGAGGTAA
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