mRNA_H-paniculata_contig3252.8748.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3252.8748.1
Unique NamemRNA_H-paniculata_contig3252.8748.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3252.8748.1 vs. uniprot
Match: D7G3E1_ECTSI (Similar to camp and camp-inhibited cgmp 3,5-cyclic phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 6.000e-7
Identity = 30/51 (58.82%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:   88 KRGKRGSMALDKSWNAITKSQAEKDGSAKQKQLGNIRRRKSLIAQEPRLLK 240
            K G+RGS+A+DK+W AI KS+AE DG  KQKQL  IRRR S +  +P  LK
Sbjct:  157 KGGRRGSLAIDKTWEAINKSRAEADGGVKQKQLDTIRRRISNVGTQPPELK 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3252.8748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3E1_ECTSI6.000e-758.82Similar to camp and camp-inhibited cgmp 3,5-cyclic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3252contigH-paniculata_contig3252:10632..15484 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size242
Cds size240
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3252.8748.1prot_H-paniculata_contig3252.8748.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3252 10632..15483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930004.7609212-CDS-H-paniculata_contig3252:10631..106591622930004.7609212-CDS-H-paniculata_contig3252:10631..10659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3252 10632..10659 +
1691481106.875426-CDS-H-paniculata_contig3252:10631..106591691481106.875426-CDS-H-paniculata_contig3252:10631..10659Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3252 10632..10659 +
1622930004.772441-CDS-H-paniculata_contig3252:14178..142941622930004.772441-CDS-H-paniculata_contig3252:14178..14294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3252 14179..14294 +
1691481106.8851533-CDS-H-paniculata_contig3252:14178..142941691481106.8851533-CDS-H-paniculata_contig3252:14178..14294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3252 14179..14294 +
1622930004.7840834-CDS-H-paniculata_contig3252:15387..154831622930004.7840834-CDS-H-paniculata_contig3252:15387..15483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3252 15388..15483 +
1691481106.8943586-CDS-H-paniculata_contig3252:15387..154831691481106.8943586-CDS-H-paniculata_contig3252:15387..15483Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3252 15388..15483 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3252.8748.1

>prot_H-paniculata_contig3252.8748.1 ID=prot_H-paniculata_contig3252.8748.1|Name=mRNA_H-paniculata_contig3252.8748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
SSSSQHRKYEIRAENDDGHKHYSGRSGKDKRGKRGSMALDKSWNAITKSQ
AEKDGSAKQKQLGNIRRRKSLIAQEPRLLK
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mRNA from alignment at H-paniculata_contig3252:10632..15484+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3252.8748.1 ID=mRNA_H-paniculata_contig3252.8748.1|Name=mRNA_H-paniculata_contig3252.8748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4853bp|location=Sequence derived from alignment at H-paniculata_contig3252:10632..15484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTCATCATCACAGCACCGCAAATACGGTATGGTTAACGGTAGCTAATT
CACTATTGTGTGATTGTATATTGATAGTAGATGGATAGATGTCTTACTGC
GCACTCCCTGAATCATATGGCGCACTATACCTGAGAAAACAAGTAAGGAA
AATCCGAGATTGAACTCACCAGGAGTGGATTACACCTTAAGTCCACCATA
TGCAGGCTCTTAGACACAATCAATCCAAGGGTGCTCAGCTGTTTTTTCCC
AACACATCAGCTCAATCGCTCCGACCGGCGATTAAGGAGTATGGCAAGTT
AATGTGGTGAATGAAACACTTCAAGACTTTCCTCGCTTGTGACGCTTCGA
CGAATTATGTACATGTTGATGGTATATTCGTATAATACGGCGCCCGAACC
CGTCAATTCTAGTCTGCGTTCGCAGAACTAACATGCATATGACCTAATTG
CGTACGTTGCTGGCAAATCACATATACTTCTATGCGTTGGCAGCCCTGAC
CTAACTGCGTCGGCAAAGTGTGTGAGGGCCAACGGGCCACAGAATGATGT
GCCAAGTAGGCGTTTGTAACTAGGGGATCAACCTGCAGGGACATTTCAGA
TTTCCGCAATCTAATTGTACCTCCCAATACGGTTTCAACAGCCTAGCTTA
TCTTAGCCTCTATCAGGACCGAATAGTTAACAACCAAGCAGCCTCCAATC
ACAAACGTGTTGCATGGACGCCGTAAGTAAAACAATCATTGGACTCAAGT
ACACCGAATAGTAGGTACTCCTCAGTCATCGAGAACGGTGATACCTTGAG
GGAGGAACACACCACTTAGCGGAGCGCGTTGAGGCAGAGGCGTAATCGAT
CGTTGTTGGCTGGGGAAACAGCCCTTTGGGGAGGCTTGGCGTTGGCTTGC
TAAAAGATGGCGTCGGTTATGACCCAACAACCCGACCTTGTTGACCCCGG
AATCTTCTTACGTGGTTGCCGGGAGCCGCTGCCTCAGTATCGAGAGTGCC
TCATGAAGAACTTGCAAGATTGGAACAGAAGGTACAAAGGCCGTCATGGA
ACAACTGACTGCTGCAAAGTGCTGTGTGTCTACTTTTTCCTCCTGTGCAT
GTTGTGGTCAGTGCAATGCATAGTGAATAGAACTGCCATTGGTCGGTGTG
GGGGTACTGCTCGGCAAGGCTCTTGCTGTCGTAGTTAATTCCCTTCGTGG
ACGCCTCTTCTGTGCTTACCGTAATGAGCATGATGTTCAGACCCTCTCAG
GTCTTAGCGGTGTGTTGGCTAATGCTGCGTCAACTAGATTGAACGGTCGC
CGATGGAGGGGTTAAACCTAGTGGCCAGCCCTACAAGGGCAAGCGCATGA
GCGGCTATTGGCGTGCGTATCCTGCCATACACTAGGCAAACACACCAAGA
TCCGTTGTTCAGCAGTTTTCCTATCATTCCCAACAAGAAGTATGTAAATT
GAACAAAGCCTACGATGCGAACTTGGCTTACAATAATTCACTGGTCACCC
GCGACGTTCAAAGTGTGTTTGTTACTCTTTTTTACGCGTGAAATTATTAT
GTTGTGGATCTTGTGCTGTACCGACCATGTCACCTCTTCAAATCTTCCCC
TTGCTGATGGTGACAGGGGGCTGCACCGCGGGAAGCTGTCCAACGTGCAG
ATACACCAGTTGAGCCCCATGAACATCACACGATTTGATCATCAAAAGGT
GACAACTAGCAAATGACAGTCGCGGGTTGTAGGGATTAGTCCCAGTTCAA
CATGTTGGTTCTGAGCTACGTACGATTTTTTCCCGTGTAGTAACAAGATT
ACATCCAAAATGCGATATGACAACTTCCCCTCATGTCCCTTGTTGACATT
CAAAGATAATCAAGCACAATCGAGCGTTTCAGCACGCTTCCATGAGCTAA
TGACGCCTTGGGCTTATTAACGTGTAGACAATAATAGAAACATCATTCCT
CTAGTACACACAGAGAAACACATGTGAAGATTGCAAGTTAACTTGAAGGT
GTAAGCTAAAGGCGACAGCAATTTTGTCGGGTTGTATGCGTGCTCGGTGG
TTTTCCCATCTGGATCCTTTGACATGACCTGGATATGCGTATGATGTAGA
CTGTATTGGCATAACGCTTGCGAATATTCCTGAGAATTTCTCGGAGTTAT
CATGTTCTGATTCTTATTTCTTGACATGAATCCGATTCGAATCTACTTCG
AAATACTTCGAATCTGCTTCTTGTTACGGATTGGTTCGGGGCAAGGACTG
AGCAAGCCAATACCCCCCCCCCTTCTGTCATACTAATAAAAACTCCAAAA
CTCCTTTGTTCACGCTCAGGTTACAACTCCAAACCCGTCGAAGCCATGAG
TCATCGAACAAATATATAACGCAGCGTATGTTGTATCATACACCCCCCCA
TGCGTTCTCAAGATCATCAGTACAACCCTCAACAGTGCAGTATATACTTT
TCCATTACAAAAACATCGTACACGTTGTTTTAGCCGCCCATTGATCCACA
CTGTTAGGGCCCGCTGTATCCTGCGTTGAATGCCACGCCGGCAAATTACC
ATCTAGTTTGTTACCAAATGCATCACTTGTTGGACAAGGGTCTCCTTTAG
TACGGTCAAACTCAGTACCAGAATACTACTGCTGCTAGATTACCTTACAT
TCCCGAAAGTGTCTCCTACATTCCTCGCGGAATATCGGGAGATGGGGGTG
GAGAGCACTTTCGCTCGCCATTCAGATACCATCACCTTCGCCACTTGGAT
CTTTCACAAACGAAGTAGTCCTAAATGTAACCGGCGAGTGCTTTCGATTC
CAGAGTACACGAGTACGCATGATCATTTGTTCGCCTCGCGTGCTAAACGT
AATCACTGCACCGTTCTTGGTTTTTTGGGAGGGGCTTACGTGGATACGAC
GTGCATTTCTTTGTCATCGTCTCTGCTCCACATTAACTACACAAATGGTT
GTGAAGATGATCGTGGCTCGCATCCGCGAGCTGCCGAGTATTCCATCGAT
GCCTCGATTCGACGAGAAACCTTCAGACCCGGCGGTCATCAAATCAGCGA
TATCCGTGCCCTCGTCTTCACATATGATTCGGAAACAGTCGCAAACTGCC
ATGAATTATCTTGACAACCACTCCAGTTCGGGCGGGTCCATTTCGGGTAA
GAGGATTTGGTCGCCCGTACAAAACAATTCAATCAAACGCCTGCAGGATG
GAACTTGTAGTGCTGTTTTTATCGCATACTAACTGAATGATAGTGATTTT
ATTCGCTTAAGATTAACATTTCATTGATTCCACTCCCGGTAAGACAGCTT
ACTTCACAACCAGTAAAAAGTTAATTACAAATGCTTCCAGATTCATCTTG
AACTGAATATATTCTTACAGTAGGTAAGTGGTACCGGAAGCTATTTCCAG
CAACCAAACTCGTGCCCATGCGTCGTCACTAGCACCTCATGAACACGTAT
CACGATTCAACACGAACCTGACGCTTACCGGCGCATGCCAGGGATATCTA
AGTTGTTGAAGAGATTCAGTGGAACTCGTTGTTGCGCCTTCAATCAGAAA
TTCGGGCAGAGAACGACGATGGGCACAAACACTATTCTGGACGAAGCGGG
AAGGACAAGAGAGGAAAGCGCGGCAGTATGGCCCTTGACAAGAGTTGGAA
CGCCATCACTAAGGTATAGCAAATACGTGTTGCTAGACACAGGAGACATA
AGAAGCGCGGGGCGGGGACGGGAGGGGGCGGGAGGGGGGTACTCTGCTTT
TATACGTGAAAAAAATATGGAGACGTGCTCAGCAGTTGTTTCAATAAGGT
GATTGGACATATCGCTCGACCACGAATCCAAGAGGAGTGTCAGCGCGTTT
TTTGTGTCGTCTCCGGATAATTGGTGGTTTGTTCACGCGGTTTAGACGTA
ATAGGCATATGGTTGAAACAAGTCAATACGGTGCGAGCATGACCTGGTGG
GTGGAAGTGTGGCGTGCAGGATAGTTCAAGGAGGGCAGCCATGTGAAAGA
GGATTGTGATCCAGTAGACTGCCGCAGATGAAAAGTGATAATACCGAACA
CAACATTTGGGGAAAGAATGGAAGAAAAAAAACTGTGCTGTGGCACGCAG
ACTACTACGGGGGATGTCATGATGGTGCTATATTATTGTTTTCTGCTGGA
GTGATGCATCTATTACATATGTTACTTGTAGCAGTAAAATGATCAAAATG
ACAAAAACAAATGGTTGTTAGTATTTAGAGCACGTTCGTTGGCATTTCAC
AACCTAAACGAACACTCCTCGACGTGTCAGGGACGGCATATAGCAACATT
CGTCATGGCCGTTAATATCATTTTTCTCGTGCTACTGATGTTTGAGTTAG
TTCTTGCACCCTCGTTTCACTATGCTCGGCTAAACGTATCACTGCTGCCG
CAGTGCTGCGTTCCCTGGGCACAGCACGTCTTACGAGGAGTTGTCACTAT
ACTCAGGCAGCGCAAGTAGTGCGTAGCAAAGGAGACATTGAAGTCATTCA
ACATAACATTCTACCTCTTCAAATACCCAGTGCTTCCAGCTGTCGTCGAA
ACCTAGAGGTGAACGCATCTAGAAAAGTGATTGCTGTGGTGAAAAATATG
CTTTTAACGATGTACACAAGCGCTGGGGTCCCACCCTTATATTTTATCCG
ACACACCCCCTCCGCGCGTCCGGCATCTGTTCGTCCACCCCCCGCTCCCT
TTACGCAAACGATCGCCGGACCGCATCGAACCGCTTGAACGAGTGCGGCC
TGGCAGTCGCAAGCGGAGAAGGACGGCTCTGCAAAACAGAAACAGCTGGG
AAATATCCGTCGTAGGAAATCTTTAATCGCCCAAGAGCCGAGATTACTGA
AGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3252:10632..15484+

>mRNA_H-paniculata_contig3252.8748.1 ID=mRNA_H-paniculata_contig3252.8748.1|Name=mRNA_H-paniculata_contig3252.8748.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig3252:10632..15484+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTCATCATCACAGCACCGCAAATACGAGCTCATCATCACAGCACCGCA
AATACGAAATTCGGGCAGAGAACGACGATGGGCACAAACACTATTCTGGA
CGAAGCGGGAAGGACAAGAGAGGAAAGCGCGGCAGTATGGCCCTTGACAA
GAGTTGGAACGCCATCACTAAGAAATTCGGGCAGAGAACGACGATGGGCA
CAAACACTATTCTGGACGAAGCGGGAAGGACAAGAGAGGAAAGCGCGGCA
GTATGGCCCTTGACAAGAGTTGGAACGCCATCACTAAGTCGCAAGCGGAG
AAGGACGGCTCTGCAAAACAGAAACAGCTGGGAAATATCCGTCGTAGGAA
ATCTTTAATCGCCCAAGAGCCGAGATTACTGAAGTCGCAAGCGGAGAAGG
ACGGCTCTGCAAAACAGAAACAGCTGGGAAATATCCGTCGTAGGAAATCT
TTAATCGCCCAAGAGCCGAGATTACTGAAG
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