mRNA_H-paniculata_contig3248.8740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3248.8740.1
Unique NamemRNA_H-paniculata_contig3248.8740.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: D7FJR7_ECTSI (PPIase cyclophilin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJR7_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.150e-25
Identity = 54/97 (55.67%), Postives = 65/97 (67.01%), Query Frame = 3 
Query:  108 GSLEENTERVTTVECTTRAVDEPFTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISS--DAEKKAKWNNLGPIEDDPPVGKPFTR 392
            G   E   + T V+CTT A  E FT+EVYH W+P GA+RFVDLV+D +FTDVA+FRCVK FL QFGIS    + KK  W   GPI+DDP +   F R
Sbjct:   10 GISNEEEGKTTRVQCTTTASPEAFTLEVYHSWSPNGAERFVDLVKDDYFTDVALFRCVKNFLVQFGISPYVSSPKKKFWREKGPIKDDPNLQISFKR 106
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A6B2LG42_9EUKA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LG42_9EUKA)

HSP 1 Score: 88.2 bits (217), Expect = 7.750e-19
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 3 
Query:  150 CTTRAVDEPFTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDPPVGKPFTR 392
            C T A  +   IEVY DWAP+G+ RF++LV D +FT    FR VK FL QFGI +D  K  +W++ GPI DDPP G  F R
Sbjct:    2 CKTTASPKEIRIEVYPDWAPIGSDRFLELVRDNYFTKSPFFRVVKGFLVQFGIPADPSKWKEWHDKGPINDDPPKGVSFKR 82
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A7S1T0Y9_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T0Y9_9CHLO)

HSP 1 Score: 86.7 bits (213), Expect = 8.330e-18
Identity = 46/88 (52.27%), Postives = 55/88 (62.50%), Query Frame = 3 
Query:  129 ERVTTVECTTRAVDEPFTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDPPVGKPFTR 392
            E    V C T A     TIEV+ +WAPLGA RF++LVE  FF DVA+FR V  FL QFGI++D E   KW + G I DDP +G P  R
Sbjct:   26 EETKQVACETTA--GKLTIEVHPEWAPLGAARFLELVESGFFVDVALFRVVPNFLVQFGIAADPEVTKKWQSKGNIMDDPSIGTPVKR 111
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A482RUE6_9ARCH (PPIase cyclophilin-type domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RUE6_9ARCH)

HSP 1 Score: 80.5 bits (197), Expect = 2.900e-16
Identity = 41/69 (59.42%), Postives = 49/69 (71.01%), Query Frame = 3 
Query:  174 PFTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDPPVGK 380
            P  IEVY DWAPLGA+RF++LV D F+TD+A FRCVK FL QFGIS  A+K   W+    I DDP + K
Sbjct:   39 PLDIEVYPDWAPLGARRFLELVVDDFYTDIAFFRCVKGFLTQFGISDHADK-LHWHRAN-IPDDPNLRK 105
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A7S3MFS0_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFS0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 9.290e-16
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 3 
Query:  174 PFTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDP 368
            P  IE+Y +W+PLGA+RF+DLV+D FFTD+A FRCV+ FL QFGIS D   K  W+    I DDP
Sbjct:   31 PLLIEIYKEWSPLGAERFLDLVKDDFFTDIAFFRCVRRFLTQFGIS-DVPSKKHWHREE-IPDDP 93
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A7S2DSY3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2DSY3_9DINO)

HSP 1 Score: 76.6 bits (187), Expect = 1.190e-15
Identity = 38/97 (39.18%), Postives = 60/97 (61.86%), Query Frame = 3 
Query:   96 WTAEGSLEENTERVTTVECTTRAVDEPFTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDPPVGKPF 386
            W  E +L+ +    +TV+   +    P +++V   WAPLGAQRF++LVED FF+D+AV+R + + L QFGI  + + +   +    +EDDP +G PF
Sbjct:    8 WRTEAALQADLAGPSTVKVQLQTSRGPISLQVVPAWAPLGAQRFLELVEDGFFSDLAVYRAIPDCLVQFGIVQETDPRC--HKYSDLEDDPLIGVPF 102
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A7S1U7Y9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7Y9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 4.560e-15
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 3 
Query:   93 LWTAEGSLEENTERVTTVECTTRAVDEPFTIEVYHDWAPLGAQRFVDLVEDQFF-TDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDP 368
            L TA+G    +      V C T     PFT+ V+  WAPLGA+RF+DLV D+FF T +A+FR VK F+ QFG++ D + + +W   G I+DDP
Sbjct:  133 LVTADGPPGLDNRATELVHCDTSK--GPFTVAVHRTWAPLGAERFLDLVRDRFFDTKIALFRAVKNFICQFGVAGDPKVQREWRAKGTIQDDP 223
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A1F9Z9Q9_9BACT (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusimicrobia bacterium RIFOXYB2_FULL_62_6 TaxID=1797970 RepID=A0A1F9Z9Q9_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 4.610e-14
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3 
Query:  177 FTIEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDP 368
            FT+EVY DWAPLGA RF +LV+  +FTD+A FR V  F+ QFGI  D    AKW     I+DDP
Sbjct:   29 FTVEVYKDWAPLGADRFYNLVKAGYFTDIAFFRVVSGFMVQFGIHGDPAVSAKWREAR-IQDDP 91
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A7S1R7D7_ALECA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1R7D7_ALECA)

HSP 1 Score: 73.6 bits (179), Expect = 1.430e-13
Identity = 35/70 (50.00%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:  183 IEVYHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDPPVGKPFTR 392
            +EVY +W+P GA+ F+DLV+  ++TD+A+FR V  FL QFGIS+D+    K+ +   IEDDP +G PF R
Sbjct:   28 LEVYREWSPNGAEHFLDLVKAGWYTDIALFRAVPNFLVQFGISTDSAMTQKYGSQT-IEDDPSLGLPFER 96
[Close]
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Match: A0A7S0CX23_9EUKA (Peptidyl-prolyl cis-trans isomerase n=3 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CX23_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.620e-13
Identity = 47/114 (41.23%), Postives = 64/114 (56.14%), Query Frame = 3 
Query:   57 HFTQVFAVLLVLLWTAEGSLEE-NTERVTTVECTTRAVDEPFTIEVYHDWAPLGAQRFVDLVEDQFFTD-VAVFRCVKEFLGQFGISSDAEKKAKWNNLGPIEDDPPVGKPFTR 392
            +F  +FAVL ++    EG  E+ N +   T+ C  ++   PF I +   W+P GA RF DLVE+ +F D V +FR VK FL QFGIS++  + A W    PI DD  V   F R
Sbjct:    9 YFVGIFAVLSLV----EGIGEDHNPQPDYTIRC--QSTKGPFVINMVRAWSPRGADRFKDLVEEGYFDDGVGMFRVVKGFLVQFGISNNVSRNAAWEVKSPIPDDTRVLSTFKR 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3248.8740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJR7_ECTSI2.150e-2555.67PPIase cyclophilin-type domain-containing protein ... [more]
A0A6B2LG42_9EUKA7.750e-1951.85PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S1T0Y9_9CHLO8.330e-1852.27Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A482RUE6_9ARCH2.900e-1659.42PPIase cyclophilin-type domain-containing protein ... [more]
A0A7S3MFS0_9STRA9.290e-1658.46Peptidyl-prolyl cis-trans isomerase n=1 Tax=Spumel... [more]
A0A7S2DSY3_9DINO1.190e-1539.18Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S1U7Y9_9STRA4.560e-1545.16Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A1F9Z9Q9_9BACT4.610e-1456.25Peptidyl-prolyl cis-trans isomerase n=1 Tax=Elusim... [more]
A0A7S1R7D7_ALECA1.430e-1350.00Peptidyl-prolyl cis-trans isomerase n=1 Tax=Alexan... [more]
A0A7S0CX23_9EUKA1.620e-1341.23Peptidyl-prolyl cis-trans isomerase n=3 Tax=Amorph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3248contigH-paniculata_contig3248:8531..11059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue1.2e-21
Seed eggNOG ortholog2880.D7FJR7
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0883@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size392
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3248.8740.1prot_H-paniculata_contig3248.8740.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3248 8531..11018 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930003.8014736-CDS-H-paniculata_contig3248:8530..87341622930003.8014736-CDS-H-paniculata_contig3248:8530..8734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3248 8531..8734 -
1691481106.3683615-CDS-H-paniculata_contig3248:8530..87341691481106.3683615-CDS-H-paniculata_contig3248:8530..8734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3248 8531..8734 -
1622930003.8190742-CDS-H-paniculata_contig3248:10871..110181622930003.8190742-CDS-H-paniculata_contig3248:10871..11018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3248 10872..11018 -
1691481106.3790953-CDS-H-paniculata_contig3248:10871..110181691481106.3790953-CDS-H-paniculata_contig3248:10871..11018Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3248 10872..11018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930003.8350942-UTR-H-paniculata_contig3248:11018..110591622930003.8350942-UTR-H-paniculata_contig3248:11018..11059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3248 11019..11059 -
1691481106.3901784-UTR-H-paniculata_contig3248:11018..110591691481106.3901784-UTR-H-paniculata_contig3248:11018..11059Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3248 11019..11059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3248.8740.1

>prot_H-paniculata_contig3248.8740.1 ID=prot_H-paniculata_contig3248.8740.1|Name=mRNA_H-paniculata_contig3248.8740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
MALFRHFTQVFAVLLVLLWTAEGSLEENTERVTTVECTTRAVDEPFTIEV
YHDWAPLGAQRFVDLVEDQFFTDVAVFRCVKEFLGQFGISSDAEKKAKWN
NLGPIEDDPPVGKPFTR
back to top

mRNA from alignment at H-paniculata_contig3248:8531..11059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3248.8740.1 ID=mRNA_H-paniculata_contig3248.8740.1|Name=mRNA_H-paniculata_contig3248.8740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2529bp|location=Sequence derived from alignment at H-paniculata_contig3248:8531..11059- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTTGATTCGTCATTTATCCTGGCAGGGTAATAGGCAGGGATGGCGCTA
TTTAGGCATTTTACGCAAGTGTTTGCTGTGCTTCTGGTGCTATTGTGGAC
TGCTGAGGGTTCATTGGAAGAAAATACTGAGCGGGTGACGACCGTCGAGT
GCACGACTAGAGCTGTTGATGAGCCCTTCACTATCGAGGTAAGACAACAG
GGACAGACACGTCGGGGAACCACAGGCAGATGGATATATCTCATTGGGGA
CAGGGGGTAAAGTGCTCCCACGTGCACTTATGCATTCGTCCGCCACTCCG
CCATTTTTGCTGTGGGTTTTAGTGGATGGGTTAAAATGAAGGTGCAGACC
TAGCAACCTTTCGATCTTATCTATCGCCGCTTTCATAGAGATAATGCAAT
CTTCGCGATAACAAATAACGTCGAAAGCTACCTAGCGTCGTAGATAGCAA
TTATTGCACACGCTCGCACAGGCTGTTTGTGAACCGCCCGCCACAGACCA
TAAAAGTGCATACCCGGGAACCGCAGGATGCAAAGATTTCTCGAGCCGGA
TCGTCGTCCGAGAGGAGGTACCTCCTCATTCGTAGGTGAAAAGCTGCTGG
AATGGTGATCGTACCTCACGGTATATGAGGTGAAATAGAAGTACAGAACA
GTTCTTGTTGTGGTGCAAACATTCGGGTTCCAAGCCAAAAACAGAATCGA
CTTCAGCTCTCAACCACCGGTATAGCGACTCGCAGGGCTGACATCGATGA
TCATCGTAAGTAGTGGCCTCAAGGCCTCCTATTGTGGGACCACTCACCCT
GCTTGAAGCTCCCCCGTGCCCGTACCCGCGATGATATCTTTTTGCCACTG
ATCCTGGTCGTTGGTTGGCATGGTTATGATTGCGAATCGGAACCAACTGC
GAAGACGACCCTACCAGACACCCGAAACATGTCATACTATGAGCTGTATG
GGCTGCTGAATAGGATTGGAACAAGCCTGATCCCCGGTGAACTCAATGAT
CAACACTCGCCGCCCATACTTGATTGTTGCCGCTGTCTATTTGTCGACTT
GTAGTGTTTATTTCAATTCTCCTGGGTGTGCTTGTCAATACCCCGTTGTT
AAAAAGACACATCTTCACAATATCACAAAAGAGGGTTCGTAGCTGGTCTC
CTTCTATGCCCTTGGTGGCCAAACTTCACCGGCCATCCTTGCCGGCTACC
GCTGTCTGTATGTGCGGTGATCATGTCAGTCTACCCTCGTGTGTGCGCGC
TTATGGGTTTCACGCTTCACCAAATTGTTGTTGAGCGCTTGTGCTATCGT
ACAGCTAGAAGCTGTCCAGCTGTCGATAAACCCATAAATACGATCGTCTG
AATTTCCCTCTCTGCAGCAGGAAACCTGCAAAATGCTCTTCGCCTACGGT
TCTTTGAGTTGTATTCGTCGACAGAAAACTGAATCCTAAACGGTTGCGAA
CCATGATTGTTGCGCACCACAGCAGCCAGAAACGCCTAGGACCACAGCAA
CCAGCGACCAACTATGCCTGAAGCAGCCAAAGTTTCAGAGAATGCACAGA
AGAGAGAGAGAAAAAGAGAGAGAGAGAGAGAGAATTAAGCGAACGGGTTA
AACTTTCAGGGACTTCTCATCGTAAAAAAGAGTGGTAGATCTGAATCTCC
CTGTACAAATGAGGGTTTAAGGTTCTCCCCGTGCCAGGTATGAACCCCGA
ACCAGAACCACCTCCGCGCTCGGCCTACATACATACACAGGCTTGACTCT
GTTATTGCGGTTTGTTGGGTTAGATGCACCGACGTGCCCTCAGAAAACCT
CTATCAATGCACACACACACCCAACGGACACACATAAATACAAGCATACG
CGCGCTTTGCCAATCAACGCAGTTAGGGCAAGTGTATGCTGTACCAACAC
ACACACGCGCGTTCTGCCGACGCAGTTAGGCTAGATATATGCCCGCTCTT
CCAGCGCACACGCATAGGCTCTATCAACGCAGTTAGGTCAGATATGCGCT
ATGCCAACGTACACACACAATTGCGCTCTGATGACGCACAACAGGGTCGG
TGGGTTGGGTTAAGGGAAAAGGTTTGTATTAGAGTTGTAGGCCTGCCATG
CTGCTACGTACGTTTTGAGGGGCAATCCTACCACCACGAATGATCATAAC
GCAGCAGATATAATTGGACCACCATTTATTCAGACGACAGGCGGACAAAG
ATAAGTGTTCTGCAACAAACCGAGGTGGGGCTTCACTACCCTTGGTCGAA
GAAAATCTTGACGATGATCATCATACGCTTCCGCTATAATTTACCATAAC
GGCGCCCTGAAACACCTGCCCAAAGGTCTATCACGACTGGGCTCCTCTTG
GAGCGCAGCGTTTCGTGGATCTTGTGGAGGACCAGTTTTTCACGGATGTA
GCTGTCTTCCGGTGCGTGAAGGAGTTTTTGGGTCAGTTCGGGATATCATC
GGACGCAGAAAAGAAGGCGAAGTGGAACAACTTGGGACCGATCGAAGATG
ACCCACCCGTCGGGAAGCCATTCACTAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3248:8531..11059-

>mRNA_H-paniculata_contig3248.8740.1 ID=mRNA_H-paniculata_contig3248.8740.1|Name=mRNA_H-paniculata_contig3248.8740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig3248:8531..11059- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGCTATTTAGGCATTTTACGCAAGTGTTTGCTGTGCTTCTGGTGCT
ATTGTGGACTGCTGAGGGTTCATTGGAAGAAAATACTGAGCGGGTGACGA
CCGTCGAGTGCACGACTAGAGCTGTTGATGAGCCCTTCACTATCGAGATG
GCGCTATTTAGGCATTTTACGCAAGTGTTTGCTGTGCTTCTGGTGCTATT
GTGGACTGCTGAGGGTTCATTGGAAGAAAATACTGAGCGGGTGACGACCG
TCGAGTGCACGACTAGAGCTGTTGATGAGCCCTTCACTATCGAGGTCTAT
CACGACTGGGCTCCTCTTGGAGCGCAGCGTTTCGTGGATCTTGTGGAGGA
CCAGTTTTTCACGGATGTAGCTGTCTTCCGGTGCGTGAAGGAGTTTTTGG
GTCAGTTCGGGATATCATCGGACGCAGAAAAGAAGGCGAAGTGGAACAAC
TTGGGACCGATCGAAGATGACCCACCCGTCGGGAAGCCATTCACTAGGGT
CTATCACGACTGGGCTCCTCTTGGAGCGCAGCGTTTCGTGGATCTTGTGG
AGGACCAGTTTTTCACGGATGTAGCTGTCTTCCGGTGCGTGAAGGAGTTT
TTGGGTCAGTTCGGGATATCATCGGACGCAGAAAAGAAGGCGAAGTGGAA
CAACTTGGGACCGATCGAAGATGACCCACCCGTCGGGAAGCCATTCACTA
GG
back to top