mRNA_H-paniculata_contig32456.8732.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32456.8732.1
Unique NamemRNA_H-paniculata_contig32456.8732.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: D7G0B6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B6_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 3.320e-23
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCVYGATGAGKSSLLMACLQELVTV+GRSLMNGSVSYASQRAWIQNATVR
Sbjct:  732 VCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVR 781
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: A0A6H5JJ25_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ25_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 3.320e-23
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCVYGATGAGKSSLLMACLQELVTV+GRSLMNGSVSYASQRAWIQNATVR
Sbjct:  758 VCVYGATGAGKSSLLMACLQELVTVEGRSLMNGSVSYASQRAWIQNATVR 807
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: A0A835YUJ8_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ8_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.170e-17
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCVYG TG+GKS+LLMA LQEL+T +G++LMNGSV+YASQ+AWIQNATVR
Sbjct:  509 VCVYGPTGSGKSTLLMAVLQELITEKGKALMNGSVAYASQKAWIQNATVR 558
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: A0A6H5K4L0_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4L0_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 5.760e-12
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCVYG TG GKSSLL++ L E+  V+G   +NG+V+YA+QRAWIQNAT+R
Sbjct:  746 VCVYGPTGCGKSSLLLSLLGEVRRVEGTVEINGTVAYAAQRAWIQNATLR 795
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: M2SCG4_ENTHI (Multidrug resistance-associated protein, putative (Fragment) n=1 Tax=Entamoeba histolytica KU27 TaxID=885311 RepID=M2SCG4_ENTHI)

HSP 1 Score: 62.4 bits (150), Expect = 4.560e-10
Identity = 28/50 (56.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCV G+ G+GKSS L+A L EL   +G S +NG ++Y+SQ AW+ NATVR
Sbjct:  452 VCVLGSVGSGKSSFLLALLNELEKKKGESYLNGKITYSSQSAWLMNATVR 501
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: A0A7S3XN05_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN05_HETAK)

HSP 1 Score: 60.1 bits (144), Expect = 1.630e-9
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            V VYG TG GKSSLLMA L E+    G   + G+V+YA+Q+AWIQNATVR
Sbjct:   33 VVVYGPTGCGKSSLLMALLGEIGRRAGEVAVVGTVAYAAQQAWIQNATVR 82
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: UPI001C713BDF (ATP-binding cassette sub-family C member 3-like n=1 Tax=Penaeus japonicus TaxID=27405 RepID=UPI001C713BDF)

HSP 1 Score: 60.1 bits (144), Expect = 2.990e-9
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            V V G  GAGKSSL+ A L E+   +G+ ++NGSV+Y SQ+AW+QNAT+R
Sbjct:  658 VAVVGCVGAGKSSLISALLGEMRKTKGKVVVNGSVAYVSQQAWLQNATLR 707
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: M7X446_ENTHI (Multidrug resistance-associated protein n=1 Tax=Entamoeba histolytica HM-3:IMSS TaxID=885315 RepID=M7X446_ENTHI)

HSP 1 Score: 59.3 bits (142), Expect = 5.560e-9
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCV G+ G+GKSS +++ L EL   +G  ++NGSV+Y SQ AW+ N TVR
Sbjct:  460 VCVLGSVGSGKSSFVLSILNELEKSEGECIINGSVTYGSQTAWLMNTTVR 509
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: B1N2M5_ENTHI (ATP-binding cassette protein, putative n=5 Tax=Entamoeba TaxID=5758 RepID=B1N2M5_ENTHI)

HSP 1 Score: 59.3 bits (142), Expect = 5.580e-9
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            VCV G+ G+GKSS +++ L EL   +G  ++NGSV+Y SQ AW+ N TVR
Sbjct:  460 VCVLGSVGSGKSSFVLSILNELEKSEGECIINGSVTYGSQTAWLMNTTVR 509
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BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Match: UPI001898AD9F (LOW QUALITY PROTEIN: multidrug resistance-associated protein 1-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001898AD9F)

HSP 1 Score: 59.3 bits (142), Expect = 5.590e-9
Identity = 26/50 (52.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR 150
            V + G+ G+GKSSLL ACL ++V ++G   ++GS++Y+ Q+AWIQNA+VR
Sbjct:  645 VAIVGSVGSGKSSLLSACLGDMVKLKGSVTVSGSLAYSPQQAWIQNASVR 694
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32456.8732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0B6_ECTSI3.320e-2398.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ25_9PHAE3.320e-2398.00ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A835YUJ8_9STRA1.170e-1778.00P-loop containing nucleoside triphosphate hydrolas... [more]
A0A6H5K4L0_9PHAE5.760e-1264.00ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
M2SCG4_ENTHI4.560e-1056.00Multidrug resistance-associated protein, putative ... [more]
A0A7S3XN05_HETAK1.630e-962.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001C713BDF2.990e-956.00ATP-binding cassette sub-family C member 3-like n=... [more]
M7X446_ENTHI5.560e-952.00Multidrug resistance-associated protein n=1 Tax=En... [more]
B1N2M5_ENTHI5.580e-952.00ATP-binding cassette protein, putative n=5 Tax=Ent... [more]
UPI001898AD9F5.590e-952.00LOW QUALITY PROTEIN: multidrug resistance-associat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32456contigH-paniculata_contig32456:2031..2180 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.1
Seed ortholog evalue3e-19
Seed eggNOG ortholog2880.D7G0B6
KEGG koko:K05665
KEGG TC3.A.1.208.8
KEGG Pathwayko01523,ko02010,ko04071,ko04977,ko05206,map01523,map02010,map04071,map04977,map05206
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930003.045002-CDS-H-paniculata_contig32456:2030..21801622930003.045002-CDS-H-paniculata_contig32456:2030..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32456 2031..2180 -
1691481105.994676-CDS-H-paniculata_contig32456:2030..21801691481105.994676-CDS-H-paniculata_contig32456:2030..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32456 2031..2180 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32456.8732.1prot_H-paniculata_contig32456.8732.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32456 2031..2180 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32456.8732.1

>prot_H-paniculata_contig32456.8732.1 ID=prot_H-paniculata_contig32456.8732.1|Name=mRNA_H-paniculata_contig32456.8732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=50bp
VCVYGATGAGKSSLLMACLQELVTVQGRSLMNGSVSYASQRAWIQNATVR
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mRNA from alignment at H-paniculata_contig32456:2031..2180-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32456.8732.1 ID=mRNA_H-paniculata_contig32456.8732.1|Name=mRNA_H-paniculata_contig32456.8732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at H-paniculata_contig32456:2031..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGCGTCTACGGCGCCACCGGCGCGGGGAAGAGCAGCCTTTTGATGGC
ATGTCTGCAGGAGCTAGTCACGGTACAGGGACGAAGCTTAATGAACGGGT
CTGTCTCGTACGCCAGCCAACGCGCCTGGATCCAAAACGCTACGGTAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig32456:2031..2180-

>mRNA_H-paniculata_contig32456.8732.1 ID=mRNA_H-paniculata_contig32456.8732.1|Name=mRNA_H-paniculata_contig32456.8732.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at H-paniculata_contig32456:2031..2180- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGCGTCTACGGCGCCACCGGCGCGGGGAAGAGCAGCCTTTTGATGGC
ATGTCTGCAGGAGCTAGTCACGGTACAGGGACGAAGCTTAATGAACGGGT
CTGTCTCGTACGCCAGCCAACGCGCCTGGATCCAAAACGCTACGGTAAGG
GTGTGCGTCTACGGCGCCACCGGCGCGGGGAAGAGCAGCCTTTTGATGGC
ATGTCTGCAGGAGCTAGTCACGGTACAGGGACGAAGCTTAATGAACGGGT
CTGTCTCGTACGCCAGCCAACGCGCCTGGATCCAAAACGCTACGGTAAGG
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