mRNA_H-paniculata_contig32434.8728.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32434.8728.1
Unique NamemRNA_H-paniculata_contig32434.8728.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5JQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQD0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 5.110e-21
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVSG 318
            +A + N  L  +D++QAF Q+ L +E+F KLP GCG  SG++V+LNK++Y L Q  R + KRLV  L  ++G  +S SDPCV R      V  +  +HVDD++ +G
Sbjct:   82 LACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 186
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5L3Y0_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Y0_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-20
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVSG 318
            +A + N  L  +D++QAF Q+ L +E+F KLP GCG  SG++V+LNK++Y L Q  R + KRLV  L  ++G  +S SDPCV R      V  +  +HVDD++ +G
Sbjct:  647 LACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILCAG 751
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-20
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVSG 318
            +A + N  L  +D++QAF Q+ L +E+F KLP GCG  SG++V+LNK++Y L Q  R + KRLV  L  ++G  +S SDPCV R      V  +  +HVDD++ +G
Sbjct:  548 LACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 652
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.100e-20
Identity = 46/106 (43.40%), Postives = 68/106 (64.15%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVSG 318
            +A + N  L  +D++QAF Q+ L +E+F KLP GCG  SG++V+LNK++Y L Q  R + KRLV  L  ++G  +S SDPCV R      V  +  +HVDD++ +G
Sbjct:  815 LACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 919
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5K9B2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9B2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 9.470e-20
Identity = 45/106 (42.45%), Postives = 67/106 (63.21%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVSG 318
            +A + N  L  +D++QAF Q+ L +E+F KLP GCG  SG++V+LNK++Y L Q  R +  RLV  L  ++G  +S SDPCV R      V  +  +HVDD++ +G
Sbjct:   82 LACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYELKQESRTFYNRLVSEL-KRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG 186
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5JC05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC05_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.460e-19
Identity = 41/105 (39.05%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVS 315
            VA E   +L  +DVKQA+  A L+ E++ + P+GCG  SG++VK+ +A+Y L Q GR W     + L+   G  + + DPCVFR    G V  +  ++VDD++V+
Sbjct:   33 VATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 136
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5L9Z3_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Z3_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-17
Identity = 47/106 (44.34%), Postives = 63/106 (59.43%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVSG 318
            VA E    L  +DVKQA+  A L  E+F +LP GCGDNS +IVK  +A+Y L Q GR       + LV   G  + K++PCVF      VV MI  ++VDD++V+G
Sbjct: 1090 VANEKGMNLNHWDVKQAYTHATLDEEVFLRLPAGCGDNSHKIVKAERAIYRLKQSGRQGGYHAADTLVEN-GFEQCKANPCVFCKMVDEVVVMIIVIYVDDILVAG 1194
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.300e-17
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVS 315
            VA E   +L Q+DVKQA+  A L+ E++ + P+GCG  SG++VK+ +A+Y L Q GR W     + L+   G  + + DPCVFR    G V  +  ++VDD++V+
Sbjct:  244 VATEKGKKLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 347
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5L0U4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U4_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.330e-17
Identity = 42/105 (40.00%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVS 315
            VA E   +L  +DVKQA+  A L+ E+F + P+GCG  SG++VK+ +A+Y L Q GR W     + L+   G  + + DPCVFR    G V  +  ++VDD++V+
Sbjct:  194 VATEKGKKLAHWDVKQAYINAKLKEEIFLRFPEGCGTMSGKVVKVERALYGLKQSGREWGFEAADALIEN-GYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVA 297
[Close]
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Match: A0A6H5JK49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK49_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.330e-17
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 1 
Query:    1 VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMYSLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVDDVIVS 315
            VA E   +L  +DVKQA+  A L+ E++ +LP+GCG  SG++VK+ +A+Y L Q GR W   + + L+   G  + + DPCVFR    G V  +  ++VD+++V+
Sbjct:  383 VATEKGKKLAHWDVKQAYIHAKLKEEIYLRLPEGCGSMSGKVVKVERALYGLKQSGREWGFEVADALIEN-GCEQCRVDPCVFRKVVDGEVVGLIVIYVDEILVA 486
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32434.8728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQD0_9PHAE5.110e-2143.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L3Y0_9PHAE1.080e-2043.40Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KKK1_9PHAE1.080e-2043.40Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JRL9_9PHAE1.100e-2043.40Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5K9B2_9PHAE9.470e-2042.45Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JC05_9PHAE3.460e-1939.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L9Z3_9PHAE1.030e-1744.34CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J7P7_9PHAE1.300e-1740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L0U4_9PHAE1.330e-1740.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JK49_9PHAE1.330e-1739.05Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32434contigH-paniculata_contig32434:2000..2320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score79.0
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog7029.ACYPI54017-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759,KOG1075@1,KOG1075@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons1
Model size321
Cds size321
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930002.472456-CDS-H-paniculata_contig32434:1999..23201622930002.472456-CDS-H-paniculata_contig32434:1999..2320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32434 2000..2320 -
1691481105.6764655-CDS-H-paniculata_contig32434:1999..23201691481105.6764655-CDS-H-paniculata_contig32434:1999..2320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32434 2000..2320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32434.8728.1prot_H-paniculata_contig32434.8728.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32434 2000..2320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32434.8728.1

>prot_H-paniculata_contig32434.8728.1 ID=prot_H-paniculata_contig32434.8728.1|Name=mRNA_H-paniculata_contig32434.8728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
VAVENNWRLWQFDVKQAFNQANLQFEMFTKLPDGCGDNSGRIVKLNKAMY
SLNQVGRMWSKRLVEVLVNKVGMAESKSDPCVFRLEKCGVVDMIRCVHVD
DVIVSGK
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mRNA from alignment at H-paniculata_contig32434:2000..2320-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32434.8728.1 ID=mRNA_H-paniculata_contig32434.8728.1|Name=mRNA_H-paniculata_contig32434.8728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=321bp|location=Sequence derived from alignment at H-paniculata_contig32434:2000..2320- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTGTTGAAAATAACTGGAGACTGTGGCAATTTGATGTGAAACAGGC
CTTTAATCAGGCGAATTTACAGTTCGAGATGTTCACGAAGCTTCCAGACG
GTTGCGGGGACAACAGCGGTAGAATAGTAAAGCTGAATAAGGCCATGTAT
AGTCTAAACCAGGTTGGACGGATGTGGTCAAAGCGCCTCGTAGAAGTGCT
CGTGAATAAAGTCGGTATGGCGGAATCCAAGTCTGACCCTTGCGTGTTCA
GACTCGAGAAATGTGGAGTGGTAGATATGATTAGGTGTGTTCATGTAGAT
GATGTGATTGTTTCTGGTAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig32434:2000..2320-

>mRNA_H-paniculata_contig32434.8728.1 ID=mRNA_H-paniculata_contig32434.8728.1|Name=mRNA_H-paniculata_contig32434.8728.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig32434:2000..2320- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTGCTGTTGAAAATAACTGGAGACTGTGGCAATTTGATGTGAAACAGGC
CTTTAATCAGGCGAATTTACAGTTCGAGATGTTCACGAAGCTTCCAGACG
GTTGCGGGGACAACAGCGGTAGAATAGTAAAGCTGAATAAGGCCATGTAT
AGTCTAAACCAGGTTGGACGGATGTGGTCAAAGCGCCTCGTAGAAGTGCT
CGTGAATAAAGTCGGTATGGCGGAATCCAAGTCTGACCCTTGCGTGTTCA
GACTCGAGAAATGTGGAGTGGTAGATATGATTAGGTGTGTTCATGTAGAT
GATGTGATTGTTTCTGGTAAGGTTGCTGTTGAAAATAACTGGAGACTGTG
GCAATTTGATGTGAAACAGGCCTTTAATCAGGCGAATTTACAGTTCGAGA
TGTTCACGAAGCTTCCAGACGGTTGCGGGGACAACAGCGGTAGAATAGTA
AAGCTGAATAAGGCCATGTATAGTCTAAACCAGGTTGGACGGATGTGGTC
AAAGCGCCTCGTAGAAGTGCTCGTGAATAAAGTCGGTATGGCGGAATCCA
AGTCTGACCCTTGCGTGTTCAGACTCGAGAAATGTGGAGTGGTAGATATG
ATTAGGTGTGTTCATGTAGATGATGTGATTGTTTCTGGTAAG
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