mRNA_H-paniculata_contig32356.8714.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32356.8714.1
Unique NamemRNA_H-paniculata_contig32356.8714.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32356.8714.1 vs. uniprot
Match: A0A6H5L384_9PHAE (Cytochrome b561 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L384_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 2.350e-56
Identity = 91/135 (67.41%), Postives = 103/135 (76.30%), Query Frame = 3 
Query:    3 LHSALSNLALLSMLGGTFVIYTNKTNYGKPHWTTWHAWTGLLALALWVTNQGIAGANTADLKNGRLWFLWTSRNHRWLGAAAYAAGLVALCFGLHSGWGLRSLGGVQGTWTLTAVVFAIFVGVVSQGLGVTTTKK 407
            LHSALSNLAL SMLGG + IYTNK   GK HWT+WH+W G+LALALWV N  +AGANTADL+  RL FLW SRNHRW G AA+ AGL A+  GLHSGWGLRSLGG +G WTLTA V  +FVG+V+ G    T KK
Sbjct:   68 LHSALSNLALASMLGGLYAIYTNKEKMGKNHWTSWHSWAGVLALALWVGNFAVAGANTADLEKRRLVFLWKSRNHRWAGKAAFCAGLGAVVLGLHSGWGLRSLGGERGAWTLTAGVLGVFVGIVASGGEAQTPKK 202
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BLAST of mRNA_H-paniculata_contig32356.8714.1 vs. uniprot
Match: A0A6G0WBI6_9STRA (Cytochrome b561 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WBI6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.060e-10
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 3 
Query:    6 HSALSNLALLSMLGGTFVIYTNKTNYGKPHWTTWHAWTGLLALALWVTNQGIAGANTADLKNGRLWFLWTSRNHRWLGAAAYAAGLVALCFGLHSGWGLRSLGGVQGTWTLTAVVFAIFVGV--VSQGLGVTTTKKR 410
            H+ +     + M  G  VIY NK N  +PH+TT H+W G  AL L+  N   A   T     G+  + W    HR  G  A+     A+ +GL+SGWG  +LG  QG      ++ ++ VG+  ++  + + ++KK+
Sbjct:   72 HAYMQTFTFVLMTIGFVVIYINKENNNRPHFTTIHSWVGSAALGLYYLNFFFASVKTYG---GKTNWQWKDTGHRASGTLAFLTSGAAVIYGLYSGWGRANLG-PQGQ-----LIASVLVGLLHITTAIYLLSSKKQ 199
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BLAST of mRNA_H-paniculata_contig32356.8714.1 vs. uniprot
Match: A0A224YMG9_9ACAR (Ascorbate ferrireductase (transmembrane) n=3 Tax=Rhipicephalus TaxID=34630 RepID=A0A224YMG9_9ACAR)

HSP 1 Score: 62.8 bits (151), Expect = 7.790e-8
Identity = 44/139 (31.65%), Postives = 65/139 (46.76%), Query Frame = 3 
Query:    3 LHSALSNLALLSMLGGTFVIYTNKTNYGKPHWTTWHAWTGLLALALWVTNQGIAGANTADLKNGRL-----WFLWT--SRNHRWLGAAAYAAGLVALCFGLHSGWGLRSLGGVQGTWTLT------AVVFAIFVGVVSQ 380
            LH  L   A+   L   +  + +K    KPH+TTWH+WTGL AL+L +  +G  G     L+   +     W  ++   R HR +G +A+     A+  GL S +G ++L    GT TL       A+  A F  VV  
Sbjct:   68 LHWVLQAAAIACALLACWAAFVHKAGLNKPHFTTWHSWTGLAALSLSLV-EGSVGVAALTLRASTVGKQYPWLKYSVLRRVHRAIGLSAHGFATAAMVLGLRSHYGRQTLAKALGTETLALQLVVQALAAAPFASVVQH 205
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BLAST of mRNA_H-paniculata_contig32356.8714.1 vs. uniprot
Match: UPI001896E4BD (cytochrome b561 domain-containing protein 2-like n=1 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI001896E4BD)

HSP 1 Score: 60.8 bits (146), Expect = 4.210e-7
Identity = 45/142 (31.69%), Postives = 66/142 (46.48%), Query Frame = 3 
Query:    3 LHSALSNLALLSMLGGTFVIYTNKTNYGKPHWTTWHAWTGLLALALWVTNQGIAGANTADLKNGRL-----WFLWTS--RNHRWLGAAAYAAGLVALCFGLHSGWGLRSL---------GGVQGTWTLTAVVFAIFVGVVSQ 380
            LH AL   +    L G +  + +K   GKPH++TWH+WTGL AL L +    + G     L+   +     W  + +  R HR LG +A+    VA+  GL S +G  +L         G VQ    + A+  A F  +V Q
Sbjct:   71 LHWALQAASTACALLGCWAAFVHKAALGKPHFSTWHSWTGLAALLLTLLEAAV-GVGAMTLRTSTVGKRYPWLKYAALRRVHRALGLSAHGFATVAMVVGLRSHYGRETLAKALPLGDAGAVQ--LAVQALAAAPFTAIVHQ 209
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32356.8714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L384_9PHAE2.350e-5667.41Cytochrome b561 domain-containing protein n=2 Tax=... [more]
A0A6G0WBI6_9STRA2.060e-1031.39Cytochrome b561 domain-containing protein n=1 Tax=... [more]
A0A224YMG9_9ACAR7.790e-831.65Ascorbate ferrireductase (transmembrane) n=3 Tax=R... [more]
UPI001896E4BD4.210e-731.69cytochrome b561 domain-containing protein 2-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32356contigH-paniculata_contig32356:385..1704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.9
Seed ortholog evalue3e-39
Seed eggNOG ortholog2880.D7FZP2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Eukaryotic cytochrome b561
EggNOG OGs2D0D3@1,2SDR0@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size1104
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32356.8714.1prot_H-paniculata_contig32356.8714.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32356 423..1016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.0868902-UTR-H-paniculata_contig32356:384..4221622930000.0868902-UTR-H-paniculata_contig32356:384..422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32356 385..422 +
1691481104.4326222-UTR-H-paniculata_contig32356:384..4221691481104.4326222-UTR-H-paniculata_contig32356:384..422Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32356 385..422 +
1622930000.1449518-UTR-H-paniculata_contig32356:1016..17041622930000.1449518-UTR-H-paniculata_contig32356:1016..1704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32356 1017..1704 +
1691481104.4643915-UTR-H-paniculata_contig32356:1016..17041691481104.4643915-UTR-H-paniculata_contig32356:1016..1704Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32356 1017..1704 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930000.1081808-CDS-H-paniculata_contig32356:422..6131622930000.1081808-CDS-H-paniculata_contig32356:422..613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32356 423..613 +
1691481104.444984-CDS-H-paniculata_contig32356:422..6131691481104.444984-CDS-H-paniculata_contig32356:422..613Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32356 423..613 +
1622930000.1246963-CDS-H-paniculata_contig32356:829..10161622930000.1246963-CDS-H-paniculata_contig32356:829..1016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32356 830..1016 +
1691481104.4552956-CDS-H-paniculata_contig32356:829..10161691481104.4552956-CDS-H-paniculata_contig32356:829..1016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32356 830..1016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32356.8714.1

>prot_H-paniculata_contig32356.8714.1 ID=prot_H-paniculata_contig32356.8714.1|Name=mRNA_H-paniculata_contig32356.8714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=126bp
MLGGTFVIYTNKTNYGKPHWTTWHAWTGLLALALWVTNQGIAGANTADLK
NGRLWFLWTSRNHRWLGAAAYAAGLVALCFGLHSGWGLRSLGGVQGTWTL
TAVVFAIFVGVVSQGLGVTTTKKRL*
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mRNA from alignment at H-paniculata_contig32356:385..1704+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32356.8714.1 ID=mRNA_H-paniculata_contig32356.8714.1|Name=mRNA_H-paniculata_contig32356.8714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1320bp|location=Sequence derived from alignment at H-paniculata_contig32356:385..1704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTCACAGCGCCCTCAGCAACCTGGCCTTGTTGTCAATGCTAGGTGGC
ACGTTTGTCATCTACACCAATAAGACAAACTATGGGAAACCCCACTGGAC
AACATGGCACGCCTGGACGGGTCTACTGGCGTTAGCTCTGTGGGTGACCA
ACCAAGGCATTGCTGGTGCCAACACCGCTGACCTCAAGAACGGACGGCTT
TGGTTTTTGTGGACTTCCCGTAACCACAGGTGTCTTGCTGATTGCGCACG
TAGTTGTAGCACGCACCATGTAAAACAACGGTGGTGGACATGAGAGGCTC
TCACATTTCCTCTCGCCCATCTGCTACCACGGTAACATTTGTTTGCTACG
GAAGTACTGCCTGCGCAAGGGGATCTACCACCTTCTGTTGGGTACCTGTT
GCAACCGCAACGTTTTTTGTATTGTTTTATTGACGCCATTCGCAGGTGGT
TGGGAGCTGCAGCCTATGCTGCCGGGCTGGTTGCCCTATGCTTCGGCCTG
CACAGCGGGTGGGGCTTGCGCTCCCTCGGCGGAGTCCAGGGCACGTGGAC
TTTGACGGCCGTCGTATTCGCTATTTTTGTTGGCGTTGTTTCCCAGGGGC
TAGGCGTTACAACAACAAAAAAGCGGCTGTAATGAAAAATGTAACGGTAG
TGATCAAGCCAAGTTAGTTTGACGTCAGGTTACTTTGCTGGGATTCTGAA
TTTTTCCGAAGTCGGTGGAATAATTTTTATTTTTTATTCCCAGAAATCAA
CAGGCACTTGTCAGTCCAGATATTCGCATAAATTCTGCCGCTTCTGTCGG
AAGCACGTAGCAGGGCCGGGCTCTGCACGTGGCTCCATCGGTTCTCCTTT
TGCTCTCTCAAGTTCCGTGGCGTGTGTTGTGCCCACTTTAATTTTGCTGT
GCTGTTGCTGCGCGCCTTTTAGTCGAGCTACGAGGTGAAATTGTAGCCCG
AGATTTAGCTTACGCTATTGCCATGACGATCTCGCATAGCAGAAGTAGAA
GTTGTCAATATTTCTTAGTTAAGTGGTCCCATCCTTGCTAAGCCCTCATT
TTAGTTACGCAGTACTACGCGCTGTATGTGTATGCGCATTCGATGCGTGC
TCGGATATGTTGGGGGAGTCTCATTTTACGCTGCACCTGTTTCGGAAATT
GCGAGCCCACCTATAGGGCGAAGTGCACGGGGAATGAAAGACGTAGGGGG
CGGGTTCAGTTTAAGTTCGATGCGAAGCGCATGTAGCAGTTGACTCGCAA
ATATTTGAAGGAAGTATTGAGCTTTGCAGACGAAGCAATGTCAAGTCTGC
GAATGCTACAGATTCAGCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig32356:385..1704+

>mRNA_H-paniculata_contig32356.8714.1 ID=mRNA_H-paniculata_contig32356.8714.1|Name=mRNA_H-paniculata_contig32356.8714.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at H-paniculata_contig32356:385..1704+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTAGGTGGCACGTTTGTCATCTACACCAATAAGACAAACTATGGGAA
ACCCCACTGGACAACATGGCACGCCTGGACGGGTCTACTGGCGTTAGCTC
TGTGGGTGACCAACCAAGGCATTGCTGGTGCCAACACCGCTGACCTCAAG
AACGGACGGCTTTGGTTTTTGTGGACTTCCCGTAACCACAGATGCTAGGT
GGCACGTTTGTCATCTACACCAATAAGACAAACTATGGGAAACCCCACTG
GACAACATGGCACGCCTGGACGGGTCTACTGGCGTTAGCTCTGTGGGTGA
CCAACCAAGGCATTGCTGGTGCCAACACCGCTGACCTCAAGAACGGACGG
CTTTGGTTTTTGTGGACTTCCCGTAACCACAGGTGGTTGGGAGCTGCAGC
CTATGCTGCCGGGCTGGTTGCCCTATGCTTCGGCCTGCACAGCGGGTGGG
GCTTGCGCTCCCTCGGCGGAGTCCAGGGCACGTGGACTTTGACGGCCGTC
GTATTCGCTATTTTTGTTGGCGTTGTTTCCCAGGGGCTAGGCGTTACAAC
AACAAAAAAGCGGCTGTAAGTGGTTGGGAGCTGCAGCCTATGCTGCCGGG
CTGGTTGCCCTATGCTTCGGCCTGCACAGCGGGTGGGGCTTGCGCTCCCT
CGGCGGAGTCCAGGGCACGTGGACTTTGACGGCCGTCGTATTCGCTATTT
TTGTTGGCGTTGTTTCCCAGGGGCTAGGCGTTACAACAACAAAAAAGCGG
CTGTAA
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