mRNA_H-paniculata_contig32331.8710.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32331.8710.1
Unique NamemRNA_H-paniculata_contig32331.8710.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: D7G1V7_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1V7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 2.170e-20
Identity = 38/47 (80.85%), Postives = 45/47 (95.74%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            DP+I+KG W+PEEEA++ K+RAE+GNRWSEIAKRLPGRTDNQVKNFW
Sbjct:   70 DPSIKKGTWTPEEEALITKTRAEIGNRWSEIAKRLPGRTDNQVKNFW 116          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.700e-17
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            DP I KGAW+PEEE IM ++  ELGN+WSEIAKRLPGRTDN VKN W
Sbjct:  106 DPTINKGAWTPEEEQIMVEAHKELGNKWSEIAKRLPGRTDNHVKNHW 152          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: D7FMG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 6.940e-17
Identity = 35/47 (74.47%), Postives = 43/47 (91.49%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            +P+I+K AW+P+EE IMA++RA+LGNRWSEIAK LPGRTDNQVKN W
Sbjct:   76 NPSIKKNAWTPDEERIMAEARAKLGNRWSEIAKLLPGRTDNQVKNHW 122          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A835YH49_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH49_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.290e-15
Identity = 32/46 (69.57%), Postives = 36/46 (78.26%), Query Frame = 1
Query:    4 PAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            P I K  W+ EEE IMA++  ELGN+WSEIAKRLPGRTDN VKN W
Sbjct:   58 PGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 103          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A835ZL73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL73_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.570e-15
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    4 PAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            P I K  W+P+EE +MA++ AELGNRWSEIAKRLPGRTDN VKN W
Sbjct:   92 PGISKAPWTPQEERVMAQAHAELGNRWSEIAKRLPGRTDNHVKNHW 137          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A6H5L4X1_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4X1_9PHAE)

HSP 1 Score: 77.4 bits (189), Expect = 2.150e-15
Identity = 34/45 (75.56%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKN 135
            +P+I+K AW+P+EE IMA++RA+LGNRWSEIAK LPGRTDNQVKN
Sbjct:   63 NPSIKKNAWTPDEERIMAEARAKLGNRWSEIAKLLPGRTDNQVKN 107          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A7S2HWM9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2HWM9_9EUKA)

HSP 1 Score: 73.6 bits (179), Expect = 6.980e-15
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            DPAIRK AWS +E+A++   +AELGN+W+EIAK LPGRTDN +KN W
Sbjct:    9 DPAIRKDAWSTDEDAMLIAKQAELGNKWAEIAKFLPGRTDNAIKNHW 55          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A7S0XE44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XE44_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 9.640e-15
Identity = 32/47 (68.09%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            DP I K  W+ EEE IM ++  ELGN+WSEIAKRLPGRTDN VKN W
Sbjct:   15 DPNINKDLWTEEEERIMTEAHKELGNKWSEIAKRLPGRTDNHVKNHW 61          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A2R5FYY8_9STRA (Transcription factor MYB118 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5FYY8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.020e-14
Identity = 33/47 (70.21%), Postives = 37/47 (78.72%), Query Frame = 1
Query:    1 DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            DP IRK  W+ EEEAIMAK+   LGNRWSEI+K LPGRTDN +KN W
Sbjct:   67 DPTIRKDPWTAEEEAIMAKAHQRLGNRWSEISKLLPGRTDNAIKNHW 113          
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Match: A0A7C8YXH3_OPUST (Uncharacterized protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YXH3_OPUST)

HSP 1 Score: 71.2 bits (173), Expect = 1.100e-14
Identity = 29/46 (63.04%), Postives = 37/46 (80.43%), Query Frame = 1
Query:    4 PAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW 141
            P I+K  WS EE+ I+ KS AE+GN+W+EIAKRLPGRT+N +KN W
Sbjct:   31 PDIKKDVWSEEEDRILIKSHAEIGNKWAEIAKRLPGRTENSIKNHW 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32331.8710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1V7_ECTSI2.170e-2080.85Myb-like DNA-binding domain containing protein n=1... [more]
A0A7S1XJ32_9STRA1.700e-1774.47Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D7FMG3_ECTSI6.940e-1774.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YH49_9STRA1.290e-1569.57Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835ZL73_9STRA1.570e-1571.74Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L4X1_9PHAE2.150e-1575.56MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S2HWM9_9EUKA6.980e-1565.96Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S0XE44_9STRA9.640e-1568.09Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A2R5FYY8_9STRA1.020e-1470.21Transcription factor MYB118 n=1 Tax=Hondaea fermen... [more]
A0A7C8YXH3_OPUST1.100e-1463.04Uncharacterized protein (Fragment) n=1 Tax=Opuntia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32331contigH-paniculata_contig32331:276..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue2.1e-17
Seed eggNOG ortholog2880.D7G1V7
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
EggNOG OGsCOG5147@1,KOG0048@2759
COG Functional cat.ADK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929999.3836806-CDS-H-paniculata_contig32331:275..4191622929999.3836806-CDS-H-paniculata_contig32331:275..419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32331 276..419 +
1691481104.090847-CDS-H-paniculata_contig32331:275..4191691481104.090847-CDS-H-paniculata_contig32331:275..419Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32331 276..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32331.8710.1prot_H-paniculata_contig32331.8710.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32331 276..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32331.8710.1

>prot_H-paniculata_contig32331.8710.1 ID=prot_H-paniculata_contig32331.8710.1|Name=mRNA_H-paniculata_contig32331.8710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=48bp
DPAIRKGAWSPEEEAIMAKSRAELGNRWSEIAKRLPGRTDNQVKNFW*
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mRNA from alignment at H-paniculata_contig32331:276..419+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32331.8710.1 ID=mRNA_H-paniculata_contig32331.8710.1|Name=mRNA_H-paniculata_contig32331.8710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at H-paniculata_contig32331:276..419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCCGCGATCAGGAAGGGTGCGTGGTCTCCCGAAGAAGAAGCAATCAT GGCTAAATCGAGAGCCGAGTTGGGCAACCGCTGGTCAGAGATTGCCAAGC GACTACCTGGGCGCACGGACAACCAAGTCAAGAACTTCTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32331:276..419+

>mRNA_H-paniculata_contig32331.8710.1 ID=mRNA_H-paniculata_contig32331.8710.1|Name=mRNA_H-paniculata_contig32331.8710.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at H-paniculata_contig32331:276..419+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCCCGCGATCAGGAAGGGTGCGTGGTCTCCCGAAGAAGAAGCAATCAT
GGCTAAATCGAGAGCCGAGTTGGGCAACCGCTGGTCAGAGATTGCCAAGC
GACTACCTGGGCGCACGGACAACCAAGTCAAGAACTTCTGGTGAGACCCC
GCGATCAGGAAGGGTGCGTGGTCTCCCGAAGAAGAAGCAATCATGGCTAA
ATCGAGAGCCGAGTTGGGCAACCGCTGGTCAGAGATTGCCAAGCGACTAC
CTGGGCGCACGGACAACCAAGTCAAGAACTTCTGGTGA
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