mRNA_H-paniculata_contig11349.869.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI) HSP 1 Score: 178 bits (451), Expect = 7.240e-50 Identity = 94/181 (51.93%), Postives = 111/181 (61.33%), Query Frame = 1 Query: 1 TGDYHDAMTDKMFMDWLEHRLKPAFKEMFPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEA-KSTADPGKIACVDEDGKKVNTVVLQNFEVPAEGS--------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 TGDYHDAMTDKMFM+WLE RL PAFK + NKK ILVLDN SYHHGYD EVG+PE+NSK +N LLRKY+ K T + + KK F+VPA G+ L+++VE FM+ GW+LI TPP+MPSF+PIELFWQHGKQYVSFN Sbjct: 365 TGDYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTSSAGVRSKKYT------FQVPATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFN 539
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI) HSP 1 Score: 172 bits (436), Expect = 1.260e-47 Identity = 96/181 (53.04%), Postives = 112/181 (61.88%), Query Frame = 1 Query: 4 GDYHDAMTDKMFMDWLEHRLKPAFKEM--FPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAE-GS-------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 GDYH AMTD MFM+WLEHRL PA+ + F KK ILVLDN SYHHG+D EV +PETN+KKHNVDLLRK+ AKS I ++G++ V NFEVP+E GS L +RV FM K+GW LI TPP+MPSF+PIELFWQHGKQYVS N Sbjct: 396 GDYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKS------IRVKRKEGEQ--GFVEHNFEVPSEPGSSFPAGNREGGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLN 568
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5KUM1_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM1_9PHAE) HSP 1 Score: 165 bits (417), Expect = 2.150e-47 Identity = 92/181 (50.83%), Postives = 110/181 (60.77%), Query Frame = 1 Query: 4 GDYHDAMTDKMFMDWLEHRLKPAFKEM--FPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAE-GS-------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 GDYH AMTD MFM+WLEHRL PA+ + F ++ ILVLDN SYHHG+D EV +PETN+KKHNVDLLR + AKS I ++G++ + NFEVP E GS L +RV FM K+GW LI TPP+MPSF+PIELFWQHGKQYVS N Sbjct: 145 GDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGRQMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKS------IRVRRKEGEQG----VYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLN 315
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.520e-47 Identity = 92/181 (50.83%), Postives = 110/181 (60.77%), Query Frame = 1 Query: 4 GDYHDAMTDKMFMDWLEHRLKPAFKEM--FPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAE-GS-------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 GDYH AMTD MFM+WLEHRL PA+ + F K+ ILVLDN SYHHG+D +V LPE+N+KKHNVDLLR + AKS I ++G++ + NFEVP E GS L +RV FM K+GW LI TPP+MPSF+PIELFWQHGKQYVS N Sbjct: 92 GDYHAAMTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKS------IRVKRKEGEQG----VYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLN 262
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE) HSP 1 Score: 169 bits (428), Expect = 1.220e-46 Identity = 95/181 (52.49%), Postives = 111/181 (61.33%), Query Frame = 1 Query: 4 GDYHDAMTDKMFMDWLEHRLKPAFKEM--FPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAE-GS-------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 GDYH AMTD MFM+WLEHRL PA+ + F K+ ILVLDN SYHHG+D EV +PETN+KKHNVDLLR + AKS I ++G++ VV NFEVP E GS L +RV FM K+GW LI TPP+MPSF+PIELFWQHGKQYVS N Sbjct: 362 GDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKS------IRVRRKEGEQ--GVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLN 534
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5KEG4_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEG4_9PHAE) HSP 1 Score: 158 bits (400), Expect = 1.300e-46 Identity = 90/176 (51.14%), Postives = 106/176 (60.23%), Query Frame = 1 Query: 4 GDYHDAMTDKMFMDWLEHRLKPAFKEM--FPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAE-GS-------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQ 429 GDYH AMTD MFM+WLEHRL PA+ + F K+ ILVLDN SYHHG+D EV +PETN+KKHNVDLLR + AKS I ++G++ VV NFEVP E GS L +RV M K+GW LI TPP+MPSF+PIELFWQHGKQ Sbjct: 18 GDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKS------IRVRRKEGEQ--GVVEYNFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTLMRKKGWALIWTPPYMPSFQPIELFWQHGKQ 185
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5KKL0_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKL0_9PHAE) HSP 1 Score: 165 bits (418), Expect = 2.810e-46 Identity = 94/181 (51.93%), Postives = 111/181 (61.33%), Query Frame = 1 Query: 4 GDYHDAMTDKMFMDWLEHRLKPAFKEM--FPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAE-GS-------------------------------LVDRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 GDYH AMTD MFM+WLEHRL PA+ + F K+ ILVLDN SYHHG+D EV +PETN+KKHNVDLLR + AKS I ++G++ VV +NFEVP E GS L +RV FM K+G LI TPP+MPSF+PIELFWQHGKQYVS N Sbjct: 257 GDYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKS------IRVKRKEGEQ--GVVEENFEVPTEPGSSFPAGNREGGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGLALIWTPPYMPSFQPIELFWQHGKQYVSVN 429
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5LE74_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE74_9PHAE) HSP 1 Score: 165 bits (418), Expect = 3.550e-46 Identity = 87/178 (48.88%), Postives = 105/178 (58.99%), Query Frame = 1 Query: 1 TGDYHDAMTDKMFMDWLEHRLKPAFKEMFPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAEGSLV------------------------------DRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 TGDYH+AMTD MFM WL+HRL PAF F NKK LVLDN SYHH +D EV +PETNSKK+NV+LLRKY S + +GK NFEVPA+GSL ++ E +M ++GW LI TPP+MP+F+PIELFWQHGK YVS + Sbjct: 210 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFK-----VTRESEGKAAE----YNFEVPAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIH 378
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5JRA8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA8_9PHAE) HSP 1 Score: 159 bits (402), Expect = 5.120e-46 Identity = 84/172 (48.84%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 1 TGDYHDAMTDKMFMDWLEHRLKPAFKEMFPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAEGSLVD------------------------------RVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGK 426 TGDYH+AMTD MFM WL+HRL PAF F NKK LVL+N SYHH +D EV +PETNSKK+NV+LLRKY S + +GK NFEVPA+GSL D + E +M ++GW LI TPP+MP+F+PIELFWQHGK Sbjct: 93 TGDYHNAMTDGMFMQWLKHRLTPAFDPQFKNKKMFLVLNNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFK-----VTRESEGKAAE----YNFEVPAQGSLTDANRKNGVSKDEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGK 255
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Match: A0A6H5KP14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP14_9PHAE) HSP 1 Score: 165 bits (418), Expect = 5.620e-46 Identity = 87/178 (48.88%), Postives = 105/178 (58.99%), Query Frame = 1 Query: 1 TGDYHDAMTDKMFMDWLEHRLKPAFKEMFPNKKTILVLDNTSYHHGYDPEVGLPETNSKKHNVDLLRKYEAKSTADPGKIACVDEDGKKVNTVVLQNFEVPAEGSLV------------------------------DRVEAFMSKEGWELIRTPPHMPSFEPIELFWQHGKQYVSFN 444 TGDYH+AMTD MFM WL+HRL PAF F NKK LVLDN SYHH +D EV +PETNSKK+NV+LLRKY S + +GK NFEVPA+GSL ++ E +M ++GW LI TPP+MP+F+PIELFWQHGK YVS + Sbjct: 292 TGDYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFK-----VTRESEGKAAE----YNFEVPAQGSLPNANRKNGVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIH 460 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig11349.869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig11349.869.1 >prot_H-paniculata_contig11349.869.1 ID=prot_H-paniculata_contig11349.869.1|Name=mRNA_H-paniculata_contig11349.869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=141bp MTDKMFMDWLEHRLKPAFKEMFPNKKTILVLDNTSYHHGYDPEVGLPETNback to top mRNA from alignment at H-paniculata_contig11349:1075..1614- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig11349.869.1 ID=mRNA_H-paniculata_contig11349.869.1|Name=mRNA_H-paniculata_contig11349.869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at H-paniculata_contig11349:1075..1614- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig11349:1075..1614- >mRNA_H-paniculata_contig11349.869.1 ID=mRNA_H-paniculata_contig11349.869.1|Name=mRNA_H-paniculata_contig11349.869.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at H-paniculata_contig11349:1075..1614- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |