mRNA_H-paniculata_contig3224.8686.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3224.8686.1
Unique NamemRNA_H-paniculata_contig3224.8686.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3224.8686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3224contigH-paniculata_contig3224:12022..12661 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size217
Cds size189
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3224.8686.1prot_H-paniculata_contig3224.8686.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3224 12050..12661 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.4983358-UTR-H-paniculata_contig3224:12021..120491622929995.4983358-UTR-H-paniculata_contig3224:12021..12049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3224 12022..12049 -
1691481102.9151134-UTR-H-paniculata_contig3224:12021..120491691481102.9151134-UTR-H-paniculata_contig3224:12021..12049Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3224 12022..12049 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.5149534-CDS-H-paniculata_contig3224:12049..121861622929995.5149534-CDS-H-paniculata_contig3224:12049..12186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3224 12050..12186 -
1691481102.9266713-CDS-H-paniculata_contig3224:12049..121861691481102.9266713-CDS-H-paniculata_contig3224:12049..12186Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3224 12050..12186 -
1622929995.5275073-CDS-H-paniculata_contig3224:12609..126611622929995.5275073-CDS-H-paniculata_contig3224:12609..12661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3224 12610..12661 -
1691481102.9341767-CDS-H-paniculata_contig3224:12609..126611691481102.9341767-CDS-H-paniculata_contig3224:12609..12661Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3224 12610..12661 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3224.8686.1

>prot_H-paniculata_contig3224.8686.1 ID=prot_H-paniculata_contig3224.8686.1|Name=mRNA_H-paniculata_contig3224.8686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
GRNTTFVFACVPSDGCAGSAPPITSRGKPLSQSNALLASHVLFTQDFKPL
MPRLLVTNCITN*
back to top

mRNA from alignment at H-paniculata_contig3224:12022..12661-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3224.8686.1 ID=mRNA_H-paniculata_contig3224.8686.1|Name=mRNA_H-paniculata_contig3224.8686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=640bp|location=Sequence derived from alignment at H-paniculata_contig3224:12022..12661- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCGAAACACAACCTTCGTTTTTGCCTGCGTCCCTTCCGATGGCTGCGC
CGGTAAGTCATTTTCCATGATGAATGATATTTTTTGGGGGAATTTTCTCG
TGAGTGCCGGGTCAGAGTGATCCGACTGATCTATCGAACGAAACTAAAGT
TATGGGTATTTTATTTTCCCATTTTTGCGTGGTCTTTGTTCCATTTTGGC
AGTTGTGTTCCCCTACAGTTGTCATTGTCCAACATATTTTCTATGTTCTC
ACTTTTCACCTATAAGACGGACTTTAAAATTCTGCAGAAGACAGATTTTT
CCTCTTCGTGCACAAAATATCAGCATCGGGAATAGCCTAAATAAATAGAC
GGTGCCACATGAAATCCAAAATAAATGTCACTGAAAAATGCTTGTATTTC
CCCATTGCCCCCTATTTTTTATTTGATCGTTCCCCACGGCCCCCGCCCAT
CCGCTCCGACGGCCCCTTGTGACAGGCTCAGCGCCGCCTATCACCAGCCG
CGGAAAGCCCTTGAGCCAAAGTAATGCTCTATTGGCATCACATGTGCTGT
TTACGCAAGACTTTAAACCATTGATGCCACGCCTCCTAGTAACTAATTGT
ATTACGAATTAAACTATACATACAGGATGCTGCTGCTGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3224:12022..12661-

>mRNA_H-paniculata_contig3224.8686.1 ID=mRNA_H-paniculata_contig3224.8686.1|Name=mRNA_H-paniculata_contig3224.8686.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig3224:12022..12661- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCGAAACACAACCTTCGTTTTTGCCTGCGTCCCTTCCGATGGCTGCGC
CGGGTCGAAACACAACCTTCGTTTTTGCCTGCGTCCCTTCCGATGGCTGC
GCCGGCTCAGCGCCGCCTATCACCAGCCGCGGAAAGCCCTTGAGCCAAAG
TAATGCTCTATTGGCATCACATGTGCTGTTTACGCAAGACTTTAAACCAT
TGATGCCACGCCTCCTAGTAACTAATTGTATTACGAATTAAGCTCAGCGC
CGCCTATCACCAGCCGCGGAAAGCCCTTGAGCCAAAGTAATGCTCTATTG
GCATCACATGTGCTGTTTACGCAAGACTTTAAACCATTGATGCCACGCCT
CCTAGTAACTAATTGTATTACGAATTAA
back to top