mRNA_H-paniculata_contig3223.8680.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3223.8680.1
Unique NamemRNA_H-paniculata_contig3223.8680.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig3223.8680.1 vs. uniprot
Match: D7G088_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G088_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 1.590e-75
Identity = 141/245 (57.55%), Postives = 167/245 (68.16%), Query Frame = 1 
Query:  445 ETSRVRRRPHKRVSFSNRDLVLGHAQEYDRSTAPDPVPLATRVRAQLIARRNYLMKTSKAIEGSDSDSPVTSASRGKANFCGIWRRSHGFNWAALLELSGVDKVAIPEQAAKMQASSVVHLIDHDETSFRLIVHSDSGSTQDQHFFIGGQSLPKPNSNTSDGTPNQAGSTTVANMRWAKNGQSLVLTSVDAATGDEMTVTRQLVSGGLVMVQHYRACRAQTGETAEAVTIFRRMVRR--KGTGEP 1173
            E  R   RP KRVSFS  + VLG AQ+YDR++     PL   VR ++I +R   +    + E +          +  ANFCG+WRRSHGF+W +LLE SGVDK  + EQAA+MQ+SSVVHLIDHD  SFRL+VHSDSG+TQDQHFFIGGQ  P P         N   + T++NMRW KNGQ LVLTSVDAATGDEMTV+R L + G V+VQHY A RA+TGETAEAVTIFRRMVR     T EP
Sbjct:   43 EAQRTAGRPAKRVSFSANECVLGRAQDYDRTSCEVQTPL---VRRRIIPKRPAPVVIIPSDEEAKQQQDQEPHEQQHANFCGMWRRSHGFHWESLLEFSGVDKADVAEQAARMQSSSVVHLIDHDANSFRLVVHSDSGNTQDQHFFIGGQPRPSPT--------NAPSTATLSNMRWTKNGQGLVLTSVDAATGDEMTVSRHLAAQGSVIVQHYAARRAKTGETAEAVTIFRRMVRATSSSTSEP 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3223.8680.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G088_ECTSI1.590e-7557.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3223contigH-paniculata_contig3223:591..5021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_000330.1
Exons2
Model size2465
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3223.8680.1prot_H-paniculata_contig3223.8680.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3223 1841..4712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.1090498-UTR-H-paniculata_contig3223:590..18401622929995.1090498-UTR-H-paniculata_contig3223:590..1840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3223 591..1840 -
1691481102.7638965-UTR-H-paniculata_contig3223:590..18401691481102.7638965-UTR-H-paniculata_contig3223:590..1840Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3223 591..1840 -
1622929995.158346-UTR-H-paniculata_contig3223:4712..50211622929995.158346-UTR-H-paniculata_contig3223:4712..5021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3223 4713..5021 -
1691481102.7962513-UTR-H-paniculata_contig3223:4712..50211691481102.7962513-UTR-H-paniculata_contig3223:4712..5021Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3223 4713..5021 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929995.1253788-CDS-H-paniculata_contig3223:1840..22841622929995.1253788-CDS-H-paniculata_contig3223:1840..2284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3223 1841..2284 -
1691481102.774752-CDS-H-paniculata_contig3223:1840..22841691481102.774752-CDS-H-paniculata_contig3223:1840..2284Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3223 1841..2284 -
1622929995.1443923-CDS-H-paniculata_contig3223:4250..47121622929995.1443923-CDS-H-paniculata_contig3223:4250..4712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3223 4251..4712 -
1691481102.785203-CDS-H-paniculata_contig3223:4250..47121691481102.785203-CDS-H-paniculata_contig3223:4250..4712Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3223 4251..4712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3223.8680.1

>prot_H-paniculata_contig3223.8680.1 ID=prot_H-paniculata_contig3223.8680.1|Name=mRNA_H-paniculata_contig3223.8680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp
MCNTTVLQGRSASHVENVVIMRQEETARSVLGCKRARSTSTTPCDETSRV
RRRPHKRVSFSNRDLVLGHAQEYDRSTAPDPVPLATRVRAQLIARRNYLM
KTSKAIEGSDSDSPVTSASRGKANFCGIWRRSHGFNWAALLELSGVDKVA
IPEQAAKMQASSVVHLIDHDETSFRLIVHSDSGSTQDQHFFIGGQSLPKP
NSNTSDGTPNQAGSTTVANMRWAKNGQSLVLTSVDAATGDEMTVTRQLVS
GGLVMVQHYRACRAQTGETAEAVTIFRRMVRRKGTGEPDAVTVASCSNTV
Q*
back to top

mRNA from alignment at H-paniculata_contig3223:591..5021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3223.8680.1 ID=mRNA_H-paniculata_contig3223.8680.1|Name=mRNA_H-paniculata_contig3223.8680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4431bp|location=Sequence derived from alignment at H-paniculata_contig3223:591..5021- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCGATCTTTGCCGCATTATTTTGGGGTTGGTCGTTGTTGGTAGGGTCGG
GAAATCATGTTCAGCAGTTGTCGACGAGTGACACTATTTCAGAGTATTCC
CTCGAACGTAGCCGGTTACACTTCCAGAGAACACCAGGCAGAAACCAGGA
ACGCGTAAACCTCCTTCCGCTTTGACAAAGCATTTCTTGTACACTTCAGT
GTCTGCGCCATTACCAACCAGCCAGGGAGAGTATACAGAAGAACCATCAG
AAACACTTACAACTACTTTCCGCGGGACCGTAGCTGTACGTACCCCCTAC
ATCACGATAATGTGCAACACAACGGTTCTACAGGGACGTTCGGCCTCCCA
CGTCGAAAACGTTGTCATCATGCGTCAAGAGGAAACAGCCCGGAGCGTGC
TCGGATGCAAGCGTGCACGGTCGACCTCTACTACGCCTTGCGATGAAACC
AGCAGAGTTCGCCGGCGCCCCCACAAGCGGGTGAGCTTCAGCAACAGGGA
TTTGGTGCTGGGCCACGCTCAGGAGTACGACAGATCTACAGCACCGGATC
CAGTCCCCCTCGCCACAAGGGTGAGAGCGCAGCTTATTGCGCGAAGAAAT
TATTTGATGAAGACGAGCAAAGCAATAGAAGGATCAGACAGTGATAGCCC
AGTGACGAGTGCTAGCAGAGGCAAAGCAAACTTTTGCGGGATATGGAGGA
GGAGCCACGGGTTCAACTGGGCGGCATTGCTAGAGCTGTCGGGGGTGGAC
AAGGTAGCTATTCCCGAGCAGGTGGGTTTCGTTTTGGTGTTATCTGAGGT
CTGTGGTAAATGTTTTTTCACCGTCTTCGTGTTGGTGTGTGTATAGACAG
AATTGTCTTCTTGGGTGTATTTTTTAGTCCGCAGTAGGATGAATTGCGGT
AGATTTTTCTCTGCAATTATTGCCACCACCATAAAGAAGCACAAACGTTG
AATGAGGCGGGCGACATCTGTGCCGTGCTGTGCTGTGCTGAAGTGTGTTA
CACCACAATGGAAGAGATGGTAGTATGCGCTAGATCCGAATTACCTGCCT
CTCCCCAATCAGAAGGACAACAGACCGCTGTTGCCCCAGTGCTCAAGTGG
TCCGCACTGACGAATTCTTCAGCGTCAGTTCGTCTCATCTTCTAGAAATA
TGTATTTTCGTATATATCTTCTCCAACTGTTTCAGTGTAGCATGCATGGA
GCAATAGCCAAGCAATTTTAGCTGACACATATTAAGGGGCATATCATTAT
CTCTACGACGCTTCAGTCCATGATTTTAAGTAGCGACATCTCAGTATAGA
CAGGCAGTACTAGCATTGGGCGGAGTCTGTGTGGACTCTAACATTCATCA
TGCACACCTCCGTATTGTATATGTTCTCAAAAGATATGTTTGTATGTTCT
CATATTTGCGTTATACTTGAGCATCATCTGTGGTCTTGGCGCACACCATG
GTTGAACCATCCCTATTTCTTCGTACACTTCGTGCTGTGCCATGAAACGT
TGAATACTTTTCAACACAGAATAATAACAGTAAAATAATTTTCAAGGAGT
GGGATTCCTCCCTAATGAAGAATGTAGAACGCTCCCGCTTGTCCAAGTGC
TGGTAGAACCCAAGCACAGAGGTCACGCACAATGACCCCAAAGATACTGC
CGTTATTTTGGGTGATCCAGTAACACAAAGACAGTATTAAGATACACTTG
ACTCATCGCAGTAACGTTTTGTATGCAAATGCAAACGAGCAGTTATATGC
TACAGGTCATACCTTCAGTTATTTCGTCTTGTTGAGAGGCAGTGCGGTCT
GATGCGGCACAACGGAGTGGCCATGTATTCGCAGGAGCGGCTTTCTTCCA
ACAGTCAGTGCACTGTCCATCCCCCGAGCTACTATGACATGAAAGTTTCA
ATGCTTCCCTTCGATGTTCACGTGTGTTGGCGTTCATGATTTTATTTGGA
GCCTTTCAGGGTGTGACATAACCTTGTACCTGGCACCAGATATCCCATAA
GTATTTGAGAATCTTACAGTTTTTGTATTATGCAAGCTTTGAGTCTACCA
CCGGCTCCAATTTGAAGCCTCAATGTCAATCATCGAATTCCTCACCTTTT
GAGCATCTTGGTGGATTTAAGACCCTACTTGATGCCCCCCGGAGCGGACT
GCCGCAGACTCCCCACGATCTTAATCTTCCAACGCCTTCATTAGGCATAA
ACCAACTTCCGGGGGTAGAGCTCAAACTCAAGTCGGCCACTACTGCTATA
ATATGTGATGTTGGCTCGTCGGAATTTGCAATATTTCGTGCCCCCCCCCC
CCTACTGACAGGGGCCTATGATCATGTGCAATCGTGCAGCCGGAATGTTG
ATACATTTATTCAGTAGCTAGAACAGGTCATGAAATCAACCGAGTTCTAG
GTTTTTATTTCTTATAGACGTACTTGGTAGCAACCTGTGTCATTTTGTCT
TGAATCAGGAGGAGTAAAAGCGTGAATTGGTGCTGTGCATTCCACGGCCA
CGAATTATATCGGAAATGATGAATATATGGTGAATTTCTCTCGAAAGCCC
AAGCACGTCATGTAAGGTGGTCAGCAAGAGTGCAGTGCAAAGGGAGGGCT
AGTTGAAAATAGTAAATACAGCAGAACGATACATTCCTCACACTGAAGCT
CTGATTGTCCATTCACTTGATGCTGTTGATTAACCTTCGTCTCTCATGTC
TATCCCTACGCTACCCCACGCCACCTCGTTCGCACAGGCTGCCAAAATGC
AAGCTTCCTCGGTAGTACACCTGATTGATCACGACGAGACTTCGTTCAGG
CTCATCGTACACAGCGACTCGGGCAGCACCCAAGATCAGCATTTCTTCAT
CGGGGGCCAGTCACTACCGAAACCCAACAGTAATACCTCCGATGGCACCC
CCAACCAGGCCGGATCCACTACTGTCGCCAACATGCGTTGGGCGAAGAAC
GGGCAGTCTCTCGTCCTTACTAGCGTGGACGCTGCGACAGGCGATGAGAT
GACGGTCACAAGGCAGCTGGTATCCGGGGGCCTGGTGATGGTGCAGCACT
ATAGGGCATGCCGTGCGCAGACGGGAGAAACCGCGGAGGCTGTCACCATA
TTCCGCAGGATGGTGCGCCGCAAGGGAACAGGCGAACCCGACGCAGTGAC
GGTTGCTTCGTGCTCCAACACTGTGCAATAGTTGCTTTTTAGGGGCTCCC
CTCAACTCCTTATTGAATTTTATTTGCTCATAAGTGTACACAACTGCGCC
TCCCTCACACCCCACCACCACCTCCCTCCCCCCCCCCATATGTTGACGTG
AGAACGCGTACGTTTGGGGGTGCGTTAATCTGGAGCTGGATCTGGAAACA
ATGTCCTAACATTTTGTTTAACCTTTTGACGGCGCAAATCGGACTTTTTT
CCACCTGCGAAAGTCTGCACGGCGTAAAAAGGGCGGTACACGTAGGGGGG
GCTTGCTGCTGCAATATAGAGCATGAAGCGCACAGCGACACGTTCCTTTA
GAAACTGGAAATCGTTTACGCATAAATAGGGTACGGGCATGTTGCGCTCG
AGATGGAAGTCTGTTCGTTTGTGATGAGGGTTTGATTGATGGTTTGAAGC
ATGTCATGAATGCTTTGAAGGTGGAGCTGCCAGAGGCTTTATTGAGGGTT
GGGGAGAGTTTGGCGTCCTCAATTGTTATGTCCTCTTATTAGGCTGCCAA
CGTATTACACGCTGAGGGTAGTCTCGTTTGTTGAATTTCGTTGTAGGTGA
TGCGCTTTTGAGTCCACGACGATGTACGTGAAGTTGGTACGGTGCTAGTG
TAGAGTGTATCTCTGTACTCTCTATTTAGTTACCAGAACACGGTGCACGT
TTGTGTGTTGCGCGGAAATATTGGTACATGTTGTCGACATATGTATGGTG
AGATGCTACTTGGGAATAAAATTTCAGTCACCGCGTATCGCCTTCTGTCT
AACTTTTTGTCACCTTCGGCCATCACACGGACGTGAGGCTATTCTGATTG
AGCTGTGTCTTGTACTGGGCGCGGCGTGATCGTCGAAGTACTCAATCCAT
AAGAATTTTACACTGAGGAATGCGTGGTCGTTTCATATCACCCAGCGAGG
ATATCTGATAATAGCGAAGAGTAGCAAAGGGATCATTCGATATATGCGTA
TAGGTAGGTAGAGAGTAAATGTCTCATTTTACCTATAGTCGGTACTAAAT
GATTCATTTTACAGGTGCTGCCGAAGATCCCTTGGGATGTGGCGTGTGCA
GTGTGTGTACTGTGTGTGTATGTGTATGTATGTACTGCATTTGTGTGCGC
GTTTGTGCGTGAGGTTCGTGCAACGCACATCCTCATATCGGAGATATTTT
AGACAGTAACGAGAGGATAACAACATTGTCTTGGAAACACACCCGGATGA
TCTCTTTGCACTCGAACAAAAAATGATGAAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig3223:591..5021-

>mRNA_H-paniculata_contig3223.8680.1 ID=mRNA_H-paniculata_contig3223.8680.1|Name=mRNA_H-paniculata_contig3223.8680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig3223:591..5021- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGCAACACAACGGTTCTACAGGGACGTTCGGCCTCCCACGTCGAAAA
CGTTGTCATCATGCGTCAAGAGGAAACAGCCCGGAGCGTGCTCGGATGCA
AGCGTGCACGGTCGACCTCTACTACGCCTTGCGATGAAACCAGCAGAGTT
CGCCGGCGCCCCCACAAGCGGGTGAGCTTCAGCAACAGGGATTTGGTGCT
GGGCCACGCTCAGGAGTACGACAGATCTACAGCACCGGATCCAGTCCCCC
TCGCCACAAGGGTGAGAGCGCAGCTTATTGCGCGAAGAAATTATTTGATG
AAGACGAGCAAAGCAATAGAAGGATCAGACAGTGATAGCCCAGTGACGAG
TGCTAGCAGAGGCAAAGCAAACTTTTGCGGGATATGGAGGAGGAGCCACG
GGTTCAACTGGGCGGCATTGCTAGAGCTGTCGGGGGTGGACAAGGTAGCT
ATTCCCGAGCAGATGTGCAACACAACGGTTCTACAGGGACGTTCGGCCTC
CCACGTCGAAAACGTTGTCATCATGCGTCAAGAGGAAACAGCCCGGAGCG
TGCTCGGATGCAAGCGTGCACGGTCGACCTCTACTACGCCTTGCGATGAA
ACCAGCAGAGTTCGCCGGCGCCCCCACAAGCGGGTGAGCTTCAGCAACAG
GGATTTGGTGCTGGGCCACGCTCAGGAGTACGACAGATCTACAGCACCGG
ATCCAGTCCCCCTCGCCACAAGGGTGAGAGCGCAGCTTATTGCGCGAAGA
AATTATTTGATGAAGACGAGCAAAGCAATAGAAGGATCAGACAGTGATAG
CCCAGTGACGAGTGCTAGCAGAGGCAAAGCAAACTTTTGCGGGATATGGA
GGAGGAGCCACGGGTTCAACTGGGCGGCATTGCTAGAGCTGTCGGGGGTG
GACAAGGTAGCTATTCCCGAGCAGGCTGCCAAAATGCAAGCTTCCTCGGT
AGTACACCTGATTGATCACGACGAGACTTCGTTCAGGCTCATCGTACACA
GCGACTCGGGCAGCACCCAAGATCAGCATTTCTTCATCGGGGGCCAGTCA
CTACCGAAACCCAACAGTAATACCTCCGATGGCACCCCCAACCAGGCCGG
ATCCACTACTGTCGCCAACATGCGTTGGGCGAAGAACGGGCAGTCTCTCG
TCCTTACTAGCGTGGACGCTGCGACAGGCGATGAGATGACGGTCACAAGG
CAGCTGGTATCCGGGGGCCTGGTGATGGTGCAGCACTATAGGGCATGCCG
TGCGCAGACGGGAGAAACCGCGGAGGCTGTCACCATATTCCGCAGGATGG
TGCGCCGCAAGGGAACAGGCGAACCCGACGCAGTGACGGTTGCTTCGTGC
TCCAACACTGTGCAATAGGCTGCCAAAATGCAAGCTTCCTCGGTAGTACA
CCTGATTGATCACGACGAGACTTCGTTCAGGCTCATCGTACACAGCGACT
CGGGCAGCACCCAAGATCAGCATTTCTTCATCGGGGGCCAGTCACTACCG
AAACCCAACAGTAATACCTCCGATGGCACCCCCAACCAGGCCGGATCCAC
TACTGTCGCCAACATGCGTTGGGCGAAGAACGGGCAGTCTCTCGTCCTTA
CTAGCGTGGACGCTGCGACAGGCGATGAGATGACGGTCACAAGGCAGCTG
GTATCCGGGGGCCTGGTGATGGTGCAGCACTATAGGGCATGCCGTGCGCA
GACGGGAGAAACCGCGGAGGCTGTCACCATATTCCGCAGGATGGTGCGCC
GCAAGGGAACAGGCGAACCCGACGCAGTGACGGTTGCTTCGTGCTCCAAC
ACTGTGCAATAG
back to top