mRNA_H-paniculata_contig3221.8675.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3221.8675.1
Unique NamemRNA_H-paniculata_contig3221.8675.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3221.8675.1 vs. uniprot
Match: A0A6H5L6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 2.600e-11
Identity = 29/51 (56.86%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 GGCLLCVSTSFHAVTVFQPPSVGTERFEWEPCAVVSKKLLDWALVTCTSEG 153
            GGCLLCV +  HAVTVFQPP    +  EWEP A VS  LL W L  C +E 
Sbjct:  120 GGCLLCVVSCLHAVTVFQPPKDSPDGMEWEPLATVSSALLHWGLRVCPTES 170
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3221.8675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6Y7_9PHAE2.600e-1156.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3221contigH-paniculata_contig3221:6053..7550 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranscription factor IIIC, 90kDa subunit, N-terminal
Ec32 orthologEc-05_005910.1
Exons2
Model size191
Cds size189
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.5424407-CDS-H-paniculata_contig3221:6053..60961622929994.5424407-CDS-H-paniculata_contig3221:6053..6096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3221 6054..6096 -
1691481102.5303602-CDS-H-paniculata_contig3221:6053..60961691481102.5303602-CDS-H-paniculata_contig3221:6053..6096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3221 6054..6096 -
1622929994.5552986-CDS-H-paniculata_contig3221:7404..75501622929994.5552986-CDS-H-paniculata_contig3221:7404..7550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3221 7405..7550 -
1691481102.540196-CDS-H-paniculata_contig3221:7404..75501691481102.540196-CDS-H-paniculata_contig3221:7404..7550Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3221 7405..7550 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3221.8675.1prot_H-paniculata_contig3221.8675.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3221 6054..7550 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3221.8675.1

>prot_H-paniculata_contig3221.8675.1 ID=prot_H-paniculata_contig3221.8675.1|Name=mRNA_H-paniculata_contig3221.8675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
GGCLLCVSTSFHAVTVFQPPSVGTERFEWEPCAVVSKKLLDWALVTCTSE
GAKKMRILQEKER
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mRNA from alignment at H-paniculata_contig3221:6053..7550-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3221.8675.1 ID=mRNA_H-paniculata_contig3221.8675.1|Name=mRNA_H-paniculata_contig3221.8675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-paniculata_contig3221:6053..7550- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGTGCCTCTTGTGCGTCAGCACCTCCTTTCATGCCGTCACCGTGTT
CCAGCCTCCCAGCGTCGGAACGGAGAGATTTGAGTGGGAACCCTGCGCGG
TGGTATCCAAGAAACTGCTGGACTGGGCACTGGTGACTTGTACCTCGTGA
GCTTTGTGTGGATGATGATGATGATGATTGTAGTGATGGCTTCGGATGCT
ATATCGATATATCTGCGTTTGCCGGTCAGGGGTTCAGCTCTCAAATGTAT
GTACTTTCATGTATTTTGGTCTTGAATTGGTGGAGAAAATCATTTATTTA
AATGAACATGTTTCGGTGCAATTTTTAGCCAGCTCTGTTGATGGACACTT
GTCTACTTTGCGTTTTGTCGGTCAGGGGTTCATCTCACTTCTTAGGTTTC
AGCTTTTGGCGCAGAACAGGCAAGCGCCGGGTTGGTTCTTCGTTCGCAAC
GACCAAATAGTGAAAAAAGATCCCTGAAAATGTCGCAGGTTTTCGAAGGA
TTTATTGGTAAATGGATGAACTATAGATTGATGGATGAATTAAGGGGCTA
GTACAGATATTAACGAGATAGTGAATGGATTATTCAAGCGGTTAGCGAAT
AAACTTACGATTGAGTGCATTGTGGTGGATAAGTTAGGGAGTAAAAGGAT
GAATCAAGGGGCTAGTATAGATATGAACGAGGTAGTGAATGAATTATTCG
AGCTGTTACCGAATAAACTTACGAGTGAGTGCGTCGAAGAGTCTGTGAAT
GTATCAAGCAAGTTGAGTGAGGAACGAAGGGTCTGGAAAGTGGCCAGGAA
GTTACCAGTGAACGGATTAACGGGTTAGATAATTAATTTAGGGATTAGTG
GCTGAGGTGAGGGGTTAGTGCATAAACTAAGGACTAACGAGCACATGAGT
TAATTAGAGAATGAATTTATGAATGAATCAAGCTGGTTAATTGAATAAAC
AAAGGGTTTGGAGAATGACGTGTGAAATCAGTGAATGGCTTAATGGGTCA
ATGAATGAACTATGGGGCCAGTGAATGAAGTAAGGAGCACATGAACGAAC
AAGAGAATGAATGCATGATTTAAGGAGTGAATAGATACATCGAGAAGAGG
GGGATGTTTCGTTTTATCTCCATGGTGCGCATTTGTGATAAAAGGTCCAA
CCTCACGGACGTGGCCTACACACTAAGCTGACCTATATAAAACTATGTAT
GTATATAGTATGCGTGTATGTAGTGTATGTATGTATGCAGGGGGGGGCGT
TTCCCGTTTCCCGCCGTCCTTGACGCGATCACGATGCATGAATACACGTG
CATGGATAGGACTTCATAACGTCGAACTCCTATGAGTAAATCAATAGACA
CGAAACGCATGCGAGATACACGAAAAACTATCTCATTGATGTTTGACTTG
GTCGGATGTGGACGTAACCTCTTCCTTTTCTCTTCTTCTACCTGGTGCAC
AAAGGGAGGGAGCGAAGAAAATGAGGATATTGCAGGAGAAGGAACGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3221:6053..7550-

>mRNA_H-paniculata_contig3221.8675.1 ID=mRNA_H-paniculata_contig3221.8675.1|Name=mRNA_H-paniculata_contig3221.8675.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig3221:6053..7550- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAGGGTGCCTCTTGTGCGTCAGCACCTCCTTTCATGCCGTCACCGTGTT
CCAGCCTCCCAGCGTCGGAACGGAGAGATTTGAGTGGGAACCCTGCGCGG
TGGTATCCAAGAAACTGCTGGACTGGGCACTGGTGACTTGTACCTCGGAG
GGTGCCTCTTGTGCGTCAGCACCTCCTTTCATGCCGTCACCGTGTTCCAG
CCTCCCAGCGTCGGAACGGAGAGATTTGAGTGGGAACCCTGCGCGGTGGT
ATCCAAGAAACTGCTGGACTGGGCACTGGTGACTTGTACCTCGGAGGGAG
CGAAGAAAATGAGGATATTGCAGGAGAAGGAACGGGGAGGGAGCGAAGAA
AATGAGGATATTGCAGGAGAAGGAACGG
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