mRNA_H-paniculata_contig3221.8674.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3221.8674.1
Unique NamemRNA_H-paniculata_contig3221.8674.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3221.8674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3221contigH-paniculata_contig3221:5587..6101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.483066-CDS-H-paniculata_contig3221:5586..59881622929994.483066-CDS-H-paniculata_contig3221:5586..5988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3221 5587..5988 +
1691481102.5120082-CDS-H-paniculata_contig3221:5586..59881691481102.5120082-CDS-H-paniculata_contig3221:5586..5988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3221 5587..5988 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.5000339-UTR-H-paniculata_contig3221:5988..61011622929994.5000339-UTR-H-paniculata_contig3221:5988..6101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3221 5989..6101 +
1691481102.5213568-UTR-H-paniculata_contig3221:5988..61011691481102.5213568-UTR-H-paniculata_contig3221:5988..6101Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3221 5989..6101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3221.8674.1prot_H-paniculata_contig3221.8674.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3221 5587..5988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3221.8674.1

>prot_H-paniculata_contig3221.8674.1 ID=prot_H-paniculata_contig3221.8674.1|Name=mRNA_H-paniculata_contig3221.8674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=134bp
AASPRSPLVFSTSGTDPALLPAASLTSFRLSLSPALLLPFRPNPAPLLAT
SVVQPFLCGSPLSPPPISAAAPLVPAPAAAVPPATTLTRRSIHAVIRERE
ILATAHRPSRVIPHSSSSSSSTLSAASETPPSA*
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mRNA from alignment at H-paniculata_contig3221:5587..6101+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3221.8674.1 ID=mRNA_H-paniculata_contig3221.8674.1|Name=mRNA_H-paniculata_contig3221.8674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=515bp|location=Sequence derived from alignment at H-paniculata_contig3221:5587..6101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCCTCGCCCCGCAGCCCCCTGGTGTTCTCCACATCAGGAACAGATCC
AGCCCTACTCCCCGCAGCCTCCCTAACGTCCTTCCGCCTATCGCTGTCCC
CGGCACTGCTGCTGCCATTCCGACCCAATCCCGCCCCGTTGCTGGCCACC
TCCGTCGTCCAGCCATTTTTATGCGGCAGTCCACTGTCACCACCACCAAT
ATCGGCAGCGGCGCCATTGGTTCCTGCTCCTGCTGCCGCTGTTCCACCAG
CGACCACTCTGACCCGTCGGTCCATCCACGCGGTGATTCGCGAGCGGGAG
ATCCTTGCAACGGCCCACAGGCCGTCGAGAGTAATACCACACTCATCGTC
GTCATCATCGTCAACCCTTAGCGCCGCTTCGGAAACGCCACCCTCGGCGT
GATCAGACGGTGATGGGGTCGTTGTCGTCTGTTGCTGCTGCTGTGGGTGA
TGCCGGCCTTGTAGGCGCCGTTCCTTCTCCTGCAATATCCTCATTTTCTT
CGCTCCCTCCCTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig3221:5587..6101+

>mRNA_H-paniculata_contig3221.8674.1 ID=mRNA_H-paniculata_contig3221.8674.1|Name=mRNA_H-paniculata_contig3221.8674.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=804bp|location=Sequence derived from alignment at H-paniculata_contig3221:5587..6101+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCGCCTCGCCCCGCAGCCCCCTGGTGTTCTCCACATCAGGAACAGATCC
AGCCCTACTCCCCGCAGCCTCCCTAACGTCCTTCCGCCTATCGCTGTCCC
CGGCACTGCTGCTGCCATTCCGACCCAATCCCGCCCCGTTGCTGGCCACC
TCCGTCGTCCAGCCATTTTTATGCGGCAGTCCACTGTCACCACCACCAAT
ATCGGCAGCGGCGCCATTGGTTCCTGCTCCTGCTGCCGCTGTTCCACCAG
CGACCACTCTGACCCGTCGGTCCATCCACGCGGTGATTCGCGAGCGGGAG
ATCCTTGCAACGGCCCACAGGCCGTCGAGAGTAATACCACACTCATCGTC
GTCATCATCGTCAACCCTTAGCGCCGCTTCGGAAACGCCACCCTCGGCGT
GAGCCGCCTCGCCCCGCAGCCCCCTGGTGTTCTCCACATCAGGAACAGAT
CCAGCCCTACTCCCCGCAGCCTCCCTAACGTCCTTCCGCCTATCGCTGTC
CCCGGCACTGCTGCTGCCATTCCGACCCAATCCCGCCCCGTTGCTGGCCA
CCTCCGTCGTCCAGCCATTTTTATGCGGCAGTCCACTGTCACCACCACCA
ATATCGGCAGCGGCGCCATTGGTTCCTGCTCCTGCTGCCGCTGTTCCACC
AGCGACCACTCTGACCCGTCGGTCCATCCACGCGGTGATTCGCGAGCGGG
AGATCCTTGCAACGGCCCACAGGCCGTCGAGAGTAATACCACACTCATCG
TCGTCATCATCGTCAACCCTTAGCGCCGCTTCGGAAACGCCACCCTCGGC
GTGA
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