mRNA_H-paniculata_contig32190.8667.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32190.8667.1
Unique NamemRNA_H-paniculata_contig32190.8667.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A2N9EYD8_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EYD8_FAGSY)

HSP 1 Score: 221 bits (564), Expect = 2.680e-60
Identity = 129/319 (40.44%), Postives = 185/319 (57.99%), Query Frame = 3
Query:  240 FERPGRRKAVC*ATPEVSPFSRDIPFVRRLRKSLYGLKQSGRNWNNTLDNFLHNISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAARLI-INGLEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLRNL 1193
            F++PG    VC                 RL+KSLYGLKQS R W   L +FLH   + F MKDLG+  ++LG+++RRDR      +SQ +YIR+VL+++   + + V TP+    ++S  Q      + ++ +   Y   VG LMYA   TRPD+A+AV   +R    N + G+VDAD+A++V+DR+STT YVF L+GG T W S  Q +V  S TEAEY+A  EA KE ++L+ L+  +G   +G   +  D +SAI L K    H RTKHI VR+H  RE I  G + L+ V T +   D+LTK ++  KF+   +L
Sbjct:  896 FKQPGTENLVC-----------------RLKKSLYGLKQSPRQWYKRLKSFLH---KEFEMKDLGAAKKILGMEIRRDRETRKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRQPGTNSVVGYVDADYADEVDDRRSTTGYVFTLSGGPTCWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAVDMLTKPVTTAKFKHCLDL 1193          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT)

HSP 1 Score: 197 bits (502), Expect = 8.080e-57
Identity = 115/298 (38.59%), Postives = 165/298 (55.37%), Query Frame = 3
Query:  402 ISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAV---------------HQAAR------------LIING------LEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLRNLL 1196
            I  +F++ D+G +  VLG+ +RRDR  G  TISQ +Y++ +LKR+G  +C+ V TP+E           + P+     N+ EY+ ++G L Y +T TRPD+A+AV               H A R            L+  G      L G+ DADWA D++ R+ST+ YVF++NG   SWCS+ Q  VT S TEAEYVA   A +E V+LR LL  IG +    + + ED++ AI L K    H RTKHI V +H  RE + +  + + Y  T   LAD++TK L R  FQ+ R++L
Sbjct:    9 IGLKFKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPT-----NTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVALSHATQEIVWLRRLLNDIGEKQDQPSIMNEDNQGAIELSKNPRFHNRTKHIDVAYHFVREKVGDKSINVNYCSTDKMLADVMTKSLPRQTFQKFRDML 301          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A2N9FQZ7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FQZ7_FAGSY)

HSP 1 Score: 209 bits (532), Expect = 3.320e-56
Identity = 123/294 (41.84%), Postives = 176/294 (59.86%), Query Frame = 3
Query:  315 FVRRLRKSLYGLKQSGRNWNNTLDNFLHNISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAARLI-INGLEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLRNL 1193
             V RL+KSLYGLKQS R W   L + LH   + F MKDLG   ++LG+++RRDR      +SQ +YIR+VL+++   + +   TP+    ++S  Q      + ++ +   Y  +VG LMYA   TRPD+A+AV   +R    N + G+VDAD+A +V+DR+STT YVF L+GG   W S  Q +V  S TEAEY+A  EA KE ++L+ L+  +G   +G   +  D +SAI L K    H RTKHI VR+H  RE I  G + L+ V T +  AD+LTK ++  KF+   +L
Sbjct:  821 LVCRLKKSLYGLKQSPRQWYKRLKSLLH---KEFEMKDLGVAKKILGMEIRRDRGARKLWLSQKNYIRKVLEKFSMLDAKR--TPLANHFRLSGSQCPKNEEEIENMSKVPYASVVGCLMYAMVCTRPDLAHAVSTVSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPVTATKFKHCLDL 1108          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 208 bits (529), Expect = 1.030e-55
Identity = 131/375 (34.93%), Postives = 194/375 (51.73%), Query Frame = 3
Query:  318 VRRLRKSLYGLKQSGRNWNNTLDNFLHN----------------------------------------------------ISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAARLI-----------------ING----------------LEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLR 1187
            V +L+KSLYGLKQS R WN+TLD+FL +                                                    I  +F+++DLG +S +LG+ ++RDR + T TISQ  Y+  VLKR+   EC+ V TP+E   +       ++P+     N  EY+ ++G L Y +T TRPD+A AV   ++ +                 I G                L G+ DADWA D E R+ST+ Y+F+++G   SWCS++Q  V+ S TEAEY+A   A +E ++LR LL +IG + + ST + ED+++AI L +    H RTKHI V +H  RE +++  + + Y +T + LADILTKGL R  F++LR
Sbjct:  975 VCKLKKSLYGLKQSARCWNSTLDSFLKSSGYKQVGADSCLYMKSVKLQNGKINFVILSIHVDDILWFSNDVIMLEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-----NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMALSLATQEAIWLRRLLENIGVKQKESTVMCEDNQAAIQLSRNPKFHNRTKHIDVAFHFVREKVQDKSIDVVYCRTDEMLADILTKGLPRQTFEKLR 1344          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A438FG00_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=12 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FG00_VITVI)

HSP 1 Score: 197 bits (500), Expect = 2.170e-55
Identity = 127/346 (36.71%), Postives = 179/346 (51.73%), Query Frame = 3
Query:  315 FVRRLRKSLYGLKQSGRNWNNTLDNFLHNI---------------------------SQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAAR---------------------------LIING----LEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQ 1178
             V +LRKSLYGLKQ+ R W    DNF+H I                           S++F MKDLG+  ++LG+ + RD+ NGT  +SQ  Y+++VL R+   E + V TP+    K+S  QS     +    +   Y   +GSLMYA   TRPDIA+AV   +R                           L   G    L+G+VDAD+A D++ RKSTT +VF L G A SW S  Q++VT S TEAEYVAA EAGKE ++L   L  +G + +    L  D +SAI L K S  H ++KHI  ++H  R  + + ++ L+ +      AD+LTKG++  K +
Sbjct:   52 LVCKLRKSLYGLKQAPRQWYKKFDNFMHRIGFKRCEADLVAMLRSDIEKINNLKKQLSKQFAMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSRPGKQHWEAVKWILRYLKGSLDTCLCFTGASLKLQGYVDADFAGDIDSRKSTTGFVFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKK-QEMGILHSDSQSAIFLAKNSAFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGVTIEKLK 396          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: H3GB69_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB69_PHYRM)

HSP 1 Score: 193 bits (491), Expect = 3.880e-55
Identity = 112/292 (38.36%), Postives = 167/292 (57.19%), Query Frame = 3
Query:  402 ISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAAR---------------------------LIING-----LEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQR 1181
            + + F +K+LG L   LGI++ R+R + T  ++Q +YI+ + +++G  +C+ V TP +   K+  P S D+   P+      YR +VG+LMY +T TRPDIA AV + A+                           L+ NG     L G+ DA+WA D++ R+STT YVF LNG A SW S+ Q  V  S TEAEY+A   A +E V+LR+LL  +G EC G+TT F+D++  I L K    H RTKHI +++H  RE + + V+ L+Y  T + +AD  TK L+R K ++
Sbjct:   17 LKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKP-SEDEDFVPR----YPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGELIGYADANWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMALYNATQEAVWLRQLLLDVGCECVGATTFFQDNQGCIALAKNPAYHSRTKHIDLKYHFLREKVEDKVIVLEYKPTDEMIADGFTKALARPKHRQ 303          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A2N9HA88_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HA88_FAGSY)

HSP 1 Score: 205 bits (522), Expect = 5.830e-55
Identity = 128/351 (36.47%), Postives = 184/351 (52.42%), Query Frame = 3
Query:  240 FERPGRRKAVC*ATPEVSPFSRDIPFVRRLRKSLYGLKQSGRNWNNTLDNFLHNISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAARLIIN---------------------------------GLEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLRNL 1193
            F++PG    VC                 RL+KSLYGLKQS R W   L + LH   + F MKDLG+  ++LG+++RRDR      +SQ +YIR+VL+++   + + V TP+    ++S  Q      + ++ +   Y   VG LMYA   TRPD+A+AV   +R + N                                  + G+VDAD+A +V+DR+STT YVF L+GG   W S  Q +V  S TEAEY+A  EA KE ++L+ L+  +G   +G   +  D +SAI L K    H RTKHI VR+H  RE I  G + L+ V T +  AD+LTK ++  KF+   +L
Sbjct:  691 FKQPGTENLVC-----------------RLKKSLYGLKQSPRQWYKRLKSLLH---KEFEMKDLGAAKKILGMEIRRDRGARKLWLSQKNYIRKVLEKFSMLDAKPVSTPLANHFRLSGSQCPKNEEEIENMSKVPYASAVGCLMYAMVCTRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKGLVKELGLN-QGGVQMHCDSQSAIYLAKNQVYHARTKHIDVRFHKIRELIVTGDIVLEKVHTSENAADMLTKPVTTAKFKHCLDL 1020          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 194 bits (494), Expect = 6.520e-55
Identity = 125/366 (34.15%), Postives = 174/366 (47.54%), Query Frame = 3
Query:  324 RLRKSLYGLKQSGRNWNNTLDNFLHNIS----------------------------------------------QRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAARLIIN--------------------------------GLEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLR 1187
            +++KS+YGLKQS R WN     F+ ++                                               +R++MKDLG LS +LGI V +D+      + Q  YI  +LK+YG  +   V TP +  VK+        P  P     + Y+ MVGSL+YA+  TRPDIA AV   ++   N                                 L GF DADWA D++DR STT  +F L+GGA SW S++Q  V  S  EAEYVA  +A +E  +LR LL  +G   +  T + ED++ AI + K    H RTKHI +R+H  RE +++G + L+Y  T    ADILTK L+R KF+  R
Sbjct:    2 QIKKSIYGLKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQELEIIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDP-----STYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGNKDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVALSQAAQEGTWLRRLLNDLGMVTK-PTVILEDNQGAIAIAKNPVDHSRTKHIDIRYHYIRECVQDGEVKLEYCPTDKMKADILTKPLARQKFENFR 361          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 194 bits (494), Expect = 3.020e-54
Identity = 122/371 (32.88%), Postives = 188/371 (50.67%), Query Frame = 3
Query:  318 VRRLRKSLYGLKQSGRNWNNTLDNFL-----------------------------------------------HNISQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVH--------------QAARLII--------NGLE----------GFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIG-FECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQRLRN 1190
            V +L++SLYGLKQS R WN T+D+F+                                               H +S+RF M DLG L   LG++++  R +G  T+ Q  +++ +L ++G  + + V TP +  +K++            +  +  YR +VG+LMY    TRPD+A AV               QA + ++        +GLE          G+ DADWA D+E R+ST+ Y F +NGG  SW S++Q+ V  S TEAEY+A  EA +E V+L+  L  +G      +  ++ED++ +I L K    H RTKHI +R+H  RE + +G + L+YV T D LAD++TK ++ V+FQ LR+
Sbjct:   33 VCKLKRSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRDGQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFSREDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMALSEATQEAVWLKVFLCELGEMASDEAVKIYEDNQGSIALAKNPQFHKRTKHIDIRYHFVREKVEDGQVVLQYVSTTDMLADMMTKAITAVQFQVLRS 403          
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Match: A5B0V5_VITVI (Integrase catalytic domain-containing protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0V5_VITVI)

HSP 1 Score: 203 bits (517), Expect = 3.580e-54
Identity = 127/326 (38.96%), Postives = 180/326 (55.21%), Query Frame = 3
Query:  315 FVRRLRKSLYGLKQSGRNWNNTLDNFLHNI------------------SQRFRMKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTPVEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVHQAARLI----------------ING----LEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLVTWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLRKGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRVKFQ 1178
             V +LRKSLYGLKQS R W    DNF+H I                  S++F MKDLG+  ++LG+ + RD+ NGT  +SQ  Y+++VL R+   E + V TP+    K+S  QS     +    +   Y   +GSLMYA   TRPDIA+AV   +R +                I G    L+G+VDAD+A D++ RKSTT ++F L G A SW S  Q++VT S TEAEYVAA EAGKE ++L   L  +G + +    L  D +SAI L K S  H ++KHI  ++H  R  + + ++ L+ +      AD+LTKG++  K +
Sbjct:  815 LVCKLRKSLYGLKQSPRQWYKKFDNFMHRIGFKRWSDIEKINNMKKQLSKQFVMKDLGAAKQILGMRIIRDKANGTLKLSQSEYVKKVLSRFNMNEAKPVSTPLGSHFKLSKEQSPKTEEERDHMSKVPYASAIGSLMYAMVCTRPDIAHAVGVVSRFMSKPGKQHWEAVKCKFEIAGSSLKLQGYVDADFAGDIDSRKSTTGFIFTLGGTAISWTSNLQKIVTLSTTEAEYVAATEAGKEMIWLHGFLDELGKK-QEMGILHSDSQSAIFLAKNSVFHSKSKHIQTKYHFIRYLVEDKLVILEKICGSKNPADMLTKGVTIEKLK 1139          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32190.8667.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9EYD8_FAGSY2.680e-6040.44Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A7D9D5L2_PARCT8.080e-5738.59Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A2N9FQZ7_FAGSY3.320e-5641.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A7D9IUY0_PARCT1.030e-5534.93Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A438FG00_VITVI2.170e-5536.71Retrovirus-related Pol polyprotein from transposon... [more]
H3GB69_PHYRM3.880e-5538.36Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HA88_FAGSY5.830e-5536.47Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A0S7JP25_9TELE6.520e-5534.15POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
H3GB98_PHYRM3.020e-5432.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A5B0V5_VITVI3.580e-5438.96Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32190contigH-paniculata_contig32190:281..1786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score181.4
Seed ortholog evalue5.4e-43
Seed eggNOG ortholog7029.ACYPI24114-PA
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3BI7U@33208,3CTS1@33213,3SQRW@50557,41WYJ@6656,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Exons4
Model size1202
Cds size783
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32190.8667.1prot_H-paniculata_contig32190.8667.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32190 281..1223 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.4626427-CDS-H-paniculata_contig32190:280..7501622929993.4626427-CDS-H-paniculata_contig32190:280..750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32190 281..750 -
1691481101.9962258-CDS-H-paniculata_contig32190:280..7501691481101.9962258-CDS-H-paniculata_contig32190:280..750Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32190 281..750 -
1622929993.4797993-CDS-H-paniculata_contig32190:850..9541622929993.4797993-CDS-H-paniculata_contig32190:850..954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32190 851..954 -
1691481102.0066266-CDS-H-paniculata_contig32190:850..9541691481102.0066266-CDS-H-paniculata_contig32190:850..954Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32190 851..954 -
1622929993.499448-CDS-H-paniculata_contig32190:1014..12231622929993.499448-CDS-H-paniculata_contig32190:1014..1223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32190 1015..1223 -
1691481102.014862-CDS-H-paniculata_contig32190:1014..12231691481102.014862-CDS-H-paniculata_contig32190:1014..1223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32190 1015..1223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.5219324-UTR-H-paniculata_contig32190:1223..12471622929993.5219324-UTR-H-paniculata_contig32190:1223..1247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32190 1224..1247 -
1691481102.024941-UTR-H-paniculata_contig32190:1223..12471691481102.024941-UTR-H-paniculata_contig32190:1223..1247Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32190 1224..1247 -
1622929993.5404541-UTR-H-paniculata_contig32190:1391..17861622929993.5404541-UTR-H-paniculata_contig32190:1391..1786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32190 1392..1786 -
1691481102.0330741-UTR-H-paniculata_contig32190:1391..17861691481102.0330741-UTR-H-paniculata_contig32190:1391..1786Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32190 1392..1786 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32190.8667.1

>prot_H-paniculata_contig32190.8667.1 ID=prot_H-paniculata_contig32190.8667.1|Name=mRNA_H-paniculata_contig32190.8667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
MKDLGSLSRVLGIDVRRDRPNGTRTISQGSYIREVLKRYGFYECRGVPTP
VEGKVKISAPQSADKPSKPKSGNSTEYRGMVGSLMYASTGTRPDIANAVH
QAARLIINGLEGFVDADWAEDVEDRKSTTRYVFKLNGGATSWCSREQQLV
TWSGTEAEYVAAGEAGKETVYLRELLGSIGFECRGSTTLFEDDKSAINLR
KGSGAHCRTKHIGVRWHGNREWIREGVLALKYVQTGDQLADILTKGLSRV
KFQRLRNLLM*
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mRNA from alignment at H-paniculata_contig32190:281..1786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32190.8667.1 ID=mRNA_H-paniculata_contig32190.8667.1|Name=mRNA_H-paniculata_contig32190.8667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1506bp|location=Sequence derived from alignment at H-paniculata_contig32190:281..1786- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTATCCGCACGGCGGAAGGCGATTCGTACGAAATGGATTTTCAAGCGGAA ACTGAAGGAGAACGGCAGCGTGGCACACTACAAAGCGCGACTAGTGGCTC AAGGTTTTTCCCAGGTGGAGGGTGAAGATTTCTTTGAAACCAGTGCCCCC GTAGCTCGCATGTCGACGTTACGTACTATTTTTAGCCTGGCCGCAGAACA TGATTTCGAATTAGAAGGCATGGACGTAGATGTGGCGTATTTGAACGCCC CGGTCGAAGAAAAGCTGTTTGTTGAGCTACCCCCGAGGTTTCCCCTTTCT CTCGAGACATACCATTTGTGCGCCGCCTGCGTAAAAGCCTGTACGGCCTC AAGCAGAGCGGCCGAAACTGGAATAACACTCTTGACAATTTTCTTGTTGG GATACGACTCGAACGTTCCATTACCGACTCATGCCTGTACTTTTCCCGCG ACGAAGGGGGAGAGACAAACCTTCCGGTGGCCGTGTACGTTGACGACCTG GTCATTGCTGGTCGTCGTGAGAACGTAGACGAGTTCAAGCATAACATAAG TCAGCGTTTTAGGATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAA TAGATGTACGACGTGACCGCCCTAATGGTACCAGGACCATCTCGCAGGGT AGCTATATCCGCGAGGTACTAAAAAGATACGGTTTTTACGAGTGTCGAGG AGTACCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCCAGTCGG CCGACAAGCCCTCCAAACCGAAGTCGCTTGGAGCTGTACTGTTGGACATA GACACAGGAGTACAAGAAAGCAACTGAGGGAGAAGTGGCAATTCGACTGA ATACAGAGGTATGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGAC CTGATATAGCAAACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCA TATCAAGAAAACTTCAGTACATGCAAGCACATTTTTCGTAATCTCAGTGC TGTGTCTGGCCTCGGCATTACGTTCGGCGGTAAGAGTAATAATCAACGGT CTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAA GTCCACAACAAGGTACGTTTTCAAGCTGAACGGTGGTGCAACAAGTTGGT GCTCTAGGGAGCAACAGTTAGTCACGTGGTCCGGTACAGAGGCGGAGTAC GTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTATT AGGATCGATAGGTTTCGAATGCAGGGGGAGCACGACATTGTTTGAGGACG ACAAATCAGCTATTAATCTCAGAAAGGGATCTGGCGCACACTGCAGGACA AAGCACATTGGAGTGCGCTGGCACGGAAATCGAGAGTGGATTCGGGAAGG AGTATTGGCGTTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTT TAACGAAAGGACTAAGCAGAGTAAAGTTTCAGAGACTGAGAAATTTACTC ATGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig32190:281..1786-

>mRNA_H-paniculata_contig32190.8667.1 ID=mRNA_H-paniculata_contig32190.8667.1|Name=mRNA_H-paniculata_contig32190.8667.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig32190:281..1786- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGATGTACGACG
TGACCGCCCTAATGGTACCAGGACCATCTCGCAGGGTAGCTATATCCGCG
AGGTACTAAAAAGATACGGTTTTTACGAGTGTCGAGGAGTACCCACCCCT
GTAGAGGGAAAAGTGAAGATTTCGGCACCCCAGTCGGCCGACAAGCCCTC
CAAACCGAAATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGA
TGTACGACGTGACCGCCCTAATGGTACCAGGACCATCTCGCAGGGTAGCT
ATATCCGCGAGGTACTAAAAAGATACGGTTTTTACGAGTGTCGAGGAGTA
CCCACCCCTGTAGAGGGAAAAGTGAAGATTTCGGCACCCCAGTCGGCCGA
CAAGCCCTCCAAACCGAAAAGTGGCAATTCGACTGAATACAGAGGTATGG
TAGGATCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCAAAC
GCGGTACACCAAGCAGCACGTCAAGTGGCAATTCGACTGAATACAGAGGT
ATGGTAGGATCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGC
AAACGCGGTACACCAAGCAGCACGTCTAATAATCAACGGTCTGGAAGGAT
TCGTTGATGCCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACA
AGGTACGTTTTCAAGCTGAACGGTGGTGCAACAAGTTGGTGCTCTAGGGA
GCAACAGTTAGTCACGTGGTCCGGTACAGAGGCGGAGTACGTTGCTGCAG
GAGAAGCGGGAAAGGAGACGGTATATCTTAGGGAGTTATTAGGATCGATA
GGTTTCGAATGCAGGGGGAGCACGACATTGTTTGAGGACGACAAATCAGC
TATTAATCTCAGAAAGGGATCTGGCGCACACTGCAGGACAAAGCACATTG
GAGTGCGCTGGCACGGAAATCGAGAGTGGATTCGGGAAGGAGTATTGGCG
TTGAAATACGTGCAGACCGGCGATCAACTTGCTGACATTTTAACGAAAGG
ACTAAGCAGAGTAAAGTTTCAGAGACTGAGAAATTTACTCATGTGATAAT
AATCAACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCG
AGGACCGAAAGTCCACAACAAGGTACGTTTTCAAGCTGAACGGTGGTGCA
ACAAGTTGGTGCTCTAGGGAGCAACAGTTAGTCACGTGGTCCGGTACAGA
GGCGGAGTACGTTGCTGCAGGAGAAGCGGGAAAGGAGACGGTATATCTTA
GGGAGTTATTAGGATCGATAGGTTTCGAATGCAGGGGGAGCACGACATTG
TTTGAGGACGACAAATCAGCTATTAATCTCAGAAAGGGATCTGGCGCACA
CTGCAGGACAAAGCACATTGGAGTGCGCTGGCACGGAAATCGAGAGTGGA
TTCGGGAAGGAGTATTGGCGTTGAAATACGTGCAGACCGGCGATCAACTT
GCTGACATTTTAACGAAAGGACTAAGCAGAGTAAAGTTTCAGAGACTGAG
AAATTTACTCATGTGA
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