mRNA_H-paniculata_contig32184.8665.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32184.8665.1
Unique NamemRNA_H-paniculata_contig32184.8665.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32184.8665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32184contigH-paniculata_contig32184:2..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1160
Cds size891
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.2382312-UTR-H-paniculata_contig32184:1..2701622929993.2382312-UTR-H-paniculata_contig32184:1..270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32184 2..270 +
1691481101.9186203-UTR-H-paniculata_contig32184:1..2701691481101.9186203-UTR-H-paniculata_contig32184:1..270Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32184 2..270 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929993.2570274-CDS-H-paniculata_contig32184:270..11611622929993.2570274-CDS-H-paniculata_contig32184:270..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32184 271..1161 +
1691481101.9277146-CDS-H-paniculata_contig32184:270..11611691481101.9277146-CDS-H-paniculata_contig32184:270..1161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32184 271..1161 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32184.8665.1prot_H-paniculata_contig32184.8665.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32184 271..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32184.8665.1

>prot_H-paniculata_contig32184.8665.1 ID=prot_H-paniculata_contig32184.8665.1|Name=mRNA_H-paniculata_contig32184.8665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=297bp
MSQEGSSGSRAGGEDNLTYDQGESSDIEDQVRLILEHLGLDNRTMRESGR
SVQAPTVEAAGSEDRLHRAEGGQSPPWESSQPLGQAAAQPNMVGQDQRII
SDGARGASPDGESQGVFGRRNVEGNFASPMPATMMGQFRPKTPSFSGNWE
HFAQFEIEMINFAKMHGCEEAFVRDVFVPVGDTEKSLESLVAEGYSRRRV
ESHSWAWQLLCSALRGEDLKHMMGATSPRQVWVRLHEWYMPQTQGGVGEL
YKSFTELEMSVDTNPVGFMAELEVIARRLSAKGCVITQNQVFTRFLY
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mRNA from alignment at H-paniculata_contig32184:2..1161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32184.8665.1 ID=mRNA_H-paniculata_contig32184.8665.1|Name=mRNA_H-paniculata_contig32184.8665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1160bp|location=Sequence derived from alignment at H-paniculata_contig32184:2..1161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCCGACTGTTACATATAATTATGTTCCTGTTGGTCTGGTTCAGGTCTG
ACTGTATTCTGGTGCAGCCGGATTACCCGCTTGGGTGCCCGTGTCCGGTT
GGGGAAGTGAAGCATCCCCCCCTTCCCGACACTCTCATCTGTTTCCCTAA
ACGGGACCTGTAATAAAGAAGTTGTATAAAATCCTCTTTGTTTGTTCCAG
ACATCAATAGGCTACAGGAGCCTAGGAAATATCCAATACACTAGTGTTTT
ACCGGTAGTTCCATATAAGATGTCACAGGAAGGAAGCAGCGGCAGTCGAG
CCGGAGGAGAAGACAATTTGACGTACGACCAAGGGGAAAGCTCAGATATA
GAAGACCAAGTGAGGCTTATTCTCGAGCACCTTGGATTGGACAACAGGAC
TATGAGGGAGTCCGGTAGGAGCGTGCAGGCTCCTACTGTAGAGGCAGCCG
GGTCAGAAGACCGACTGCACAGAGCAGAAGGTGGGCAGTCACCACCCTGG
GAATCAAGTCAACCCCTGGGACAGGCTGCCGCACAGCCGAACATGGTTGG
GCAAGATCAGCGCATCATCAGTGACGGGGCTAGGGGTGCAAGCCCCGACG
GTGAGTCACAGGGTGTGTTTGGTAGGAGGAATGTAGAAGGAAACTTCGCG
TCGCCAATGCCTGCCACAATGATGGGTCAATTTAGACCAAAGACCCCATC
CTTTTCTGGTAACTGGGAACATTTTGCCCAGTTCGAGATCGAAATGATTA
ACTTCGCCAAGATGCATGGGTGTGAAGAAGCTTTCGTGAGAGATGTGTTT
GTGCCAGTGGGTGACACAGAAAAATCGCTGGAAAGTTTAGTGGCTGAAGG
TTACAGCAGACGGCGAGTGGAAAGTCACAGTTGGGCATGGCAACTTTTAT
GTTCTGCGTTGAGAGGAGAAGACTTGAAGCATATGATGGGAGCCACGTCC
CCTCGGCAGGTCTGGGTTCGGCTGCATGAGTGGTACATGCCCCAAACTCA
GGGTGGAGTTGGAGAACTCTATAAATCTTTTACTGAGCTGGAAATGTCAG
TGGACACTAACCCGGTAGGATTTATGGCTGAGCTCGAAGTTATTGCCCGA
CGACTCAGCGCAAAAGGCTGTGTGATCACACAAAATCAAGTTTTCACCCG
CTTCTTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig32184:2..1161+

>mRNA_H-paniculata_contig32184.8665.1 ID=mRNA_H-paniculata_contig32184.8665.1|Name=mRNA_H-paniculata_contig32184.8665.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1782bp|location=Sequence derived from alignment at H-paniculata_contig32184:2..1161+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCACAGGAAGGAAGCAGCGGCAGTCGAGCCGGAGGAGAAGACAATTT
GACGTACGACCAAGGGGAAAGCTCAGATATAGAAGACCAAGTGAGGCTTA
TTCTCGAGCACCTTGGATTGGACAACAGGACTATGAGGGAGTCCGGTAGG
AGCGTGCAGGCTCCTACTGTAGAGGCAGCCGGGTCAGAAGACCGACTGCA
CAGAGCAGAAGGTGGGCAGTCACCACCCTGGGAATCAAGTCAACCCCTGG
GACAGGCTGCCGCACAGCCGAACATGGTTGGGCAAGATCAGCGCATCATC
AGTGACGGGGCTAGGGGTGCAAGCCCCGACGGTGAGTCACAGGGTGTGTT
TGGTAGGAGGAATGTAGAAGGAAACTTCGCGTCGCCAATGCCTGCCACAA
TGATGGGTCAATTTAGACCAAAGACCCCATCCTTTTCTGGTAACTGGGAA
CATTTTGCCCAGTTCGAGATCGAAATGATTAACTTCGCCAAGATGCATGG
GTGTGAAGAAGCTTTCGTGAGAGATGTGTTTGTGCCAGTGGGTGACACAG
AAAAATCGCTGGAAAGTTTAGTGGCTGAAGGTTACAGCAGACGGCGAGTG
GAAAGTCACAGTTGGGCATGGCAACTTTTATGTTCTGCGTTGAGAGGAGA
AGACTTGAAGCATATGATGGGAGCCACGTCCCCTCGGCAGGTCTGGGTTC
GGCTGCATGAGTGGTACATGCCCCAAACTCAGGGTGGAGTTGGAGAACTC
TATAAATCTTTTACTGAGCTGGAAATGTCAGTGGACACTAACCCGGTAGG
ATTTATGGCTGAGCTCGAAGTTATTGCCCGACGACTCAGCGCAAAAGGCT
GTGTGATCACACAAAATCAAGTTTTCACCCGCTTCTTGTACATGTCACAG
GAAGGAAGCAGCGGCAGTCGAGCCGGAGGAGAAGACAATTTGACGTACGA
CCAAGGGGAAAGCTCAGATATAGAAGACCAAGTGAGGCTTATTCTCGAGC
ACCTTGGATTGGACAACAGGACTATGAGGGAGTCCGGTAGGAGCGTGCAG
GCTCCTACTGTAGAGGCAGCCGGGTCAGAAGACCGACTGCACAGAGCAGA
AGGTGGGCAGTCACCACCCTGGGAATCAAGTCAACCCCTGGGACAGGCTG
CCGCACAGCCGAACATGGTTGGGCAAGATCAGCGCATCATCAGTGACGGG
GCTAGGGGTGCAAGCCCCGACGGTGAGTCACAGGGTGTGTTTGGTAGGAG
GAATGTAGAAGGAAACTTCGCGTCGCCAATGCCTGCCACAATGATGGGTC
AATTTAGACCAAAGACCCCATCCTTTTCTGGTAACTGGGAACATTTTGCC
CAGTTCGAGATCGAAATGATTAACTTCGCCAAGATGCATGGGTGTGAAGA
AGCTTTCGTGAGAGATGTGTTTGTGCCAGTGGGTGACACAGAAAAATCGC
TGGAAAGTTTAGTGGCTGAAGGTTACAGCAGACGGCGAGTGGAAAGTCAC
AGTTGGGCATGGCAACTTTTATGTTCTGCGTTGAGAGGAGAAGACTTGAA
GCATATGATGGGAGCCACGTCCCCTCGGCAGGTCTGGGTTCGGCTGCATG
AGTGGTACATGCCCCAAACTCAGGGTGGAGTTGGAGAACTCTATAAATCT
TTTACTGAGCTGGAAATGTCAGTGGACACTAACCCGGTAGGATTTATGGC
TGAGCTCGAAGTTATTGCCCGACGACTCAGCGCAAAAGGCTGTGTGATCA
CACAAAATCAAGTTTTCACCCGCTTCTTGTAC
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